XLOC_031295 (pimr200)


Basic Information

Item Value
gene id XLOC_031295
gene name pimr200
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 39981479 ~ 39987192 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060756
GCAGAAGGTATACCTCTTCTACACTTCTCTCTGTTTTCCTTTTTAGTACAGTGACTGCAGATCAATAGACCTGTGCTTGCAATACAAGATTGAATGTTTATGCAAGAAGTTTACTGATGTTCTCCATCTTTTCATCCACAGGTTGCCATCAAATTCATTAAAAGAAAGCAAAACGCAAAGAATGTGAGATTAAACAACAATGCATATTAAAGTGGTGCTACTGAGTATGCTCATGGAACCTCCAAGCACCTACACTGTACGCCTTTTTGAGTGGTTTCAAGAGAAAAAATGCTTTCACCTGGTCATGGAGTATCCAGAGCCCTGTGAACCACTGGCAAGTTTTCTTTGCCACTGCGGACACTTGGAGGATAGTGTTGCGAAGAGATTGATGGTCCAGGTTGTCCGGTGTGCTCAAGAGTGCATAAACCATAGGGTTTTCCATAATGACATGCACTCCAACAACATTTTAATCAATACAGCTTTGATGCAGATCAAGCTTATTGACTTTGGACTGGGACTCCGAATCAAGGAACCAGAAGTACATCCACACCCCTTTGGCACAACATGCTTACGACATGCTCTTGAAAGCACAGTGATATCTGTGGGTCGTATTTTGGATAAAATAGCTGTCCACGCCTATGTACCTAAAGATTTGAAGAAATGTATTGCTGCTTGTGAAACTGCCAAGAAGCCCAGTCTGGAACGCATTTTACGCATGAAATGGCTAAAAGGCGTTTCAgacatttaaagcaacagttcactcaaaaatgttaattctgtctttaattacttaccctcatgcca
>TCONS_00060757
TACTGAACTTGCAAGAAAATCTGTAGTGTATCTCGACAGACCTCCAGAGTTTTTATAGCACAGTTAAATCTTTGActtgtttttttgaaaaatttccACTTATGAATTCTTCATCAACTAATCTAACTAAACTAACTCCGATCGCCGGACCAGCTTCAACATCAGTTGGAAGAATTACAGCTATGACAGAAAATCAAGACACCGAGCCCGTTCCAGGGCCATCAAAGACTGAAGGACCGTTGACTAAATTTGCTTCAATGCCAGTCGAGTCATCGAGTGTATCAGGTTTGAGAAGAAATGAGGAGACTGAGCCAGTCCCAGGCCCATCAGGACTGCACCCTACACAGGCTACATCAGGTTCAAGGCTAATCAACCGATCGCCTGGATCAGTGAAAAACAAGTATGATATGGTGAGAGAGCTGGGACGAGGACGCTATGGCATCGTCAAAATGGCTATACGAAAGTCAGATCAGCAGAAGGTATACCTCTTCTACACTTCTCTCTACATCCAATTATATTTTTTCTCCAGCCTGGCTGTCCCAGAGAAGTGGTGCTACTGAGTATGCTCATGGAACCTCCAAGCACCTACACTGTACGCCTTTTTGAGTGGTTTCAAGAGAAAAAATGCTTTCACCTGGTCATGGAGTATCCAGAGCCCTGTGAACCACTGGCAAGTTTTCTTTGCCACTGCGGACACTTGGAGGATAGTGTTGCGAAGAGATTGATGGTCCAGGTTGTCCGGTGTGCTCAAGAGTGCATAAACCATAGGGTTTTCCATAATGACATGCACTCCAACAACATTTTAATCAATACAGCTTTGATGCAGATCAAGCTTATTGACTTTGGACTGGGACTCCGAATCAAGGATTTGAAGAAATGTATTGCTGCTTGTGAAACTGCCAAGAAGCCCAGTCTGGAACGCATTTTACGCATGAAATGGCT
>TCONS_00062057
GACTGAAGGACCGTTGACTGAATTTGCTTCAATGCCAGTCGAGTCATCGAGTGTATCAGGTATTTTTGGAACAGATTTATCCCTCcatgttttataaatgttatttaattactcGTTTGGGCCAAATATGAAATCTGCATATTTTGTAGTGGGTGTGGATGATATGACTAAAAtgtttatcacaatatatatatattttttaaatttccattaatattatataattctgATAAagatataaacaatatttaaaagcctcagaaaaactgccaaaaatgcttatgaagaaaataattaaaacctTCCCCTTTAGAGCTCtgtattattttagaaataagaCCAGTGCAATTAATAGTTCACCTTTTATTTAAATTAGCATACAAACAAGAAACACGAGTTTTACATAGATAAACCCTTAAATCCTCAGATTTGTCTGGTTATTCCAATAGAGGCTATTTACATTGTTTATAAGAAGGTAGATGCTATTTACACTAATTTACACTATTTACACTAATAGTCAATAGAATTTAGATGCATCAGTATACTGTATGGGTGTATATTTACACTGAAAACAAGTTAAttgtgattgtaaaaaaaaaaaaaaacagtaatatactgtactTTACCTAccttataaacaaataaaatgtgttaatcGCTTATGTAAAGATGCAGGAACACATACTACAGTGTAATTTATAGAAGTGCCAATGCTGTTGTGCATCAGAGAATATACTTTACATGCAACAATGTTAGGGTTATGTCCCTCATTATAAATGTATACAAAATATCTATAACAACAATCgtttaaaataaatctgaaaagaaacattttaaagtagAAATCAAATTATTACTATATTAAGTGCCaactttttttctggagaaaaacGTAATTTTCAGCTTTTAAAATTGTCTGCACATTAAACTGGGATAAGTGGGTAcacaaaaaatgtatgaataaatacatttcacaCTTTGGATAATATTGCAGTATCAATATTGTAGTCTTTTTCTCATGGTGTCAGTCAGTGTCTTTCTGCTGGGAGTAGCTGGACTTTATATTTTGCCGCAGTACTGGGGGAAAATATAGCCATACATTACAGTAGTTGTCTACACATTAATGTGCATTCTTACAATCAGCAATATTGTTTTTGGCAAAGAGGGTAGAACGCATgtgttttgacaaaaatgtttgTGCACTAgtactgtagtttttacaaaaCACTATAACAGCAGAATGTTACCTTTTCATCTGTTATCATCATCTGTGTGATCATATAGATCAGTATTAGAGCAGCTGTGTCAAACTCAGACTCCTGTGTCAACTGTGTCAAACTTCAGGTTTCAACAtgctccaacacacctacctacctataggtttcaaacaagtatGAAAGACTTAATCAGTTtgagcaggtgtgtttaattagattAAAGTTAAATTGTAGAAATGCCCCTAATATTCGGCTAAAAAAAAGAGCTAAAACCGGTTAACTGGTGTCACTCTGTCTAGCATTCTGGTTTTACTCTTTCTGTTGATGTATATAATctgttaggataggacaatatttggctgagataaaATTATTTGATCATCTACAATCTGAAGGTTCAAAACTGCCTTTAAAGCTgtctaaatgaattatttattgttttgatagaTTTACAGTAGAAATGTACAGATAATAATCTTCAAGGAACATGATcttctttacttaatattctaatgattgtTTTCATAAAAGAAAGATCAACAATTTTGATACATAAAATGTATTTCTGGCTATTGCTAAAAATATTCTTGCAAAACATAAGACTGGTTCGTGCTCCAGGGtcacaaatgtgtttattttattggcttggatttttttttaaattagtaaccTAATTTATTGAGTTAAATTTAGAAAGTCCTACAAaatctgattatttaaaaaaacaataagtattTATTTCAATGCTTTTTGAGGTTATTACCAACCAATGCCAAATGCTGGCTGCAGCCTACTGTATCAAatactgtaaatgtgtttaaaaatcatATGACTGTTTCTGAAAAATATATCATGATTTATATTGATAATAAATGATTGTCCAGCCCTAGATTGTAgagtaaagttttatttttaagtgtaaaaAAGACTAAAGTTATGTAATGTTTTTCTGAGAGAAGCTGCAATGGGTGGAGAAGTATTTTTGCCaagtatttattgtgtttttgtaaCTAATGCTGTATACATGTTTGAGTTATTTTTAAGTGATTATATTAAGAATGCTTATAAAATGTACTAATATATATCATCCCAACTGTGCACCAGGTTTGAGAAGAAATGAGGAGACTGAGCCAGTCCCAGGCCCATCAGGACTGCACCCTACACAGGCTACATCAGGTTCAAGGCTAATCAACCGATCGCCTGGATCAGGTACATCTGAAACAATGATTCTTTTTTATTGGTGttttttaacagcatttattattaGCATTGATACTTGTAAAGTACAGAACAAAGTGGATTCTGGTTTTAGATGGCTTTAAATAATAGCTAAGGATTTCTGTAACAATTAGAACACTccaaacattatttacaaataaagaCAGGCACCCAAATACAGAATAACTCTTTTTTACATCTCTTACATTACTTTGTACACAGACTTTTTATTCTGCTTGTTCAGGCATAACAAGAATCTTAAATGAACATCTCTTATATCTTTCAGTGAAAAACAAGTATGATATGGTGAGAGAGCTGGGACGAGGACGCTATGGCATCGTCAAAATGGCTATACGAAAGTCAGATCAGCAGAAG

Function

symbol description
pimr200 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000092697

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060756 False 804 mRNA 0.41 4 39981479 39982694
TCONS_00060757 False 942 processed_transcript 0.44 6 39981557 39987192
TCONS_00062057 True 2810 lncRNA 0.31 1 39982688 39985497

Neighbor

gene id symbol gene type direction distance location
XLOC_031294 NA coding downstream 100406 39880658 ~ 39881073 (-)
XLOC_031293 rasgef1ba coding downstream 175605 39706345 ~ 39805874 (-)
XLOC_031292 prkg2 coding downstream 279134 39679767 ~ 39702345 (-)
XLOC_031291 antxr2a coding downstream 507244 39386225 ~ 39474235 (-)
XLOC_031290 AL935062.1 coding downstream 656595 39324768 ~ 39324884 (-)
XLOC_031296 cds1 coding upstream 22766 40009958 ~ 40040488 (-)
XLOC_031297 wdfy3 coding upstream 65738 40052930 ~ 40190949 (-)
XLOC_031298 si:dkey-193c22.1 coding upstream 213626 40200818 ~ 40210447 (-)
XLOC_031299 NA coding upstream 241096 40228288 ~ 40230908 (-)
XLOC_031300 snx18a coding upstream 285656 40272848 ~ 40292299 (-)
XLOC_031288 NA non-coding downstream 936125 39042054 ~ 39045354 (-)
XLOC_031287 BX571800.2 non-coding downstream 951554 39029811 ~ 39029925 (-)
XLOC_031286 BX571800.1 non-coding downstream 1088720 38892622 ~ 38892759 (-)
XLOC_031304 NA non-coding upstream 570040 40557232 ~ 40713992 (-)
XLOC_031306 NA non-coding upstream 823596 40810788 ~ 40829833 (-)
XLOC_031309 BX470118.1 non-coding upstream 1016956 41004148 ~ 41004262 (-)
XLOC_031312 CR753861.2 non-coding upstream 1195944 41183136 ~ 41183252 (-)

Expression


Co-expression Network