G1229061


Basic Information

Item Value
gene id G1229061
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 23836490 ~ 23839105 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1402640
TTCAGCAGTAGTTTCACTGTTCTATAACCAAAGGAAATCTTACATTATCAATGAAcacctttaaaaatatatatatccaccTCACCCCCGACAAAATTTAGAAACAACTCCAGCCCACCTCTAAAGAAAGCCGAGTATATATTCACCATTAGGGTATAAGCTTACAGCTGTGTCCCTGTAACTTGTTCATTGGCTAGACTGTCCGTTACATCAACACAGACATGAGCGCAGATTTCAAAGAAAAGCAGTCATTGAATGCAATGGGTCTTCTCAGGCAGGTGAAATGTTACAGAACATTCAGGGAGAAATTAATGATATGAGAGCAATGATTTTCCATCATATAGAATTAGGAATCATGTCAGCTctattcattacatttctatctgcaacattctGAATATTTCACTTACTGACTACACCCACAGAGCAGAACTATCAAGCTGGGAAGGTCAAAGTTGGGGCAATGGCTGTACAAACATCAATCTTTTATGGATAGTCAGCATTAATATTATTTATTTGTCGTTGTCTTAGTCTATACACAGAATGTCCATGGTAAAACATGAGTTTTATTTCACATAAGGCTCAGAAACAAAATGGCTACCGACAGCCTACTATTATTTATAGTGGTAAAGGAGGGGACGTTCGCTCTCTCTGGTTGTCCGAAGACCACTTCATCTTTGGAGCAAAAACCCAATCTGTCATCTGCTGACAGAGCAAACAACTGACCGTCCCCATGTTTGCAGAATTTCACAACACGCAGAGGTCCACAGCTGTATCAAGAGTATTTTCATAACATTGGTGTGATTCAAGATCAGTCATCTCACTCAATTATTTTAAATATTTCAAATCAATAATTCTTAGAACCCTTTTGAACAACTCTTCTTTCATCAATGGTATTATGCTACCAATAACATGTTATAGTAATAACGCAAGCTAGTCATCACTAAAGCACATTTCCATTCAATGAACCGGCGAGATCTGAACATGCCATCTTGCAGCGTTCATAGGTACATTACCTAAAATATAAGAAAAGGGGAAAAAAAAGACTTTCTCTACATACTGAAAATAAACTCTTCTCTGCTGCTTTTTGTGTACTTGAATAATTATTTGTATTCATAAAGGAATACTTGCAGAGGGAGCACAGTTCCATGTAGCTTCATAAGCTTTATGTAtaatgaacaacaatataaacgcaacatgtaaagtgttaggtccatgtttcatgagctgaaataaaagatcccagaattgttccctacgcacaaaaagcttatttctctcaaatgttgtgcacaaatgtatttacatcctggttagtgagcatttctcctttgtcaagataatccatacacctgagaggtgtggcatatcgagaagatgattaaacagcatgatcattacacagctgcaccttgtgctgggaataACAGGCCACTTAAATGTgccattttgtcacacaacaatgccacagatgtctcaagttaagggaacatgctgactgcaggaatgtccaccagagttgttgccagagatttaaatattaatttctctaccataagccacctcaaatgtaattttagagaatttggctgtactTCCAACCGgccctcacaaccgcagaccatgtgtaaccacacacgtacgcccaggacctccacatccggcttcttcacatgTGGGAAgacctgAGACCAGCCACCCAGATGAAACTGAAGAGTATTTATCAGTaacaaagcccttttgtggggaaagattcattctgattggctgggccaggctccccagtgggtgtgcTTATGTCGTCCCAGGCCCACATTTCCCAGACaggtgaaatccatatattagggcctaatttatttatttcaattgactgagttccttatatgaactgtaactcagtaaactgttgaaattgttgcattaatatttttattcagtatataaCTGCTTATTGATACTGGTCCGTTTGAATAGTCAAAAGACATGATTTTTCAACTGACTTGTTTTTTTGTTCTTGTGGAAAGATGAATAAAAGtcaacacgagaactatattcaAAAGGTAACTGTACAGCTACAGTGTGTGAAACACACCACGGCCAAGTCCAATTTCAGAACATCCGTGCTTTGAACCCAGTTCACTGCCACACCAGGTGTGCCACTGTCTCTAATACCTCTGTGCTTTCGAACAAACACTTCGTAACATTGGTAACGGCATGGTCAAATCAACATGGAAAGAAGTGGAACTAATTAAATCACTGTCCCAGCACGTGTCTGTTgcttatgtagttctgtccttgagctgttcttgtctattaatgttctgtattatgtcatgtttcttgtggaccccaggaagagtagctgctgctattgTAACAGCTAATAGGGATCCTGATAAATTACCAAAAAGGACTAATCTACAGTAAGACTTGTTCAGATGagttggagaggatgggagaCAGCGGGAGGCAGAGGTCGGCTTGGCTATCCTCAAAACCACATTTCTCTAGTTCCTTCTTGCAGTCGCACAACTTTCCCTGCGTAGATCCGTAGTGTTATAGAATCTCCAGGTCTACGTGCCGTACCTCTGGGT

Function

NR:

description
Transposable element Tcb2 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1402640 True 2594 lncRNA 0.40 2 23836490 23839105
Loading

Neighbor

gene id symbol gene type direction distance location
grxcr1a grxcr1 coding upstream 6256 23825374 ~ 23830234 (+)
shisa3 shisa3 coding upstream 213627 23616713 ~ 23622863 (+)
LOC118938707 NA coding upstream 262513 23572973 ~ 23573977 (+)
ky ky coding upstream 514833 23314948 ~ 23321657 (+)
LOC110487749 LOC106604462 coding upstream 580121 22901758 ~ 23256369 (+)
LOC110489012 znf518b coding downstream 29463 23868568 ~ 23873598 (+)
LOC110489017 fa55c coding downstream 561378 24400483 ~ 24439204 (+)
LOC110489020 LOC106609103 coding downstream 612327 24448300 ~ 24458335 (+)
csn6 cops6 coding downstream 627582 24466687 ~ 24474857 (+)
gpc2 gpc2 coding downstream 700061 24539166 ~ 24551802 (+)
G1228903 bend4 non-coding upstream 223043 23612872 ~ 23613447 (+)
G1228900 bend4 non-coding upstream 227148 23608757 ~ 23609342 (+)
G1228899 NA non-coding upstream 227813 23608275 ~ 23608677 (+)
G1228897 NA non-coding upstream 238480 23595917 ~ 23598010 (+)
G1229788 NA non-coding downstream 174740 24013845 ~ 24014082 (+)
G1229823 NA non-coding downstream 192505 24031610 ~ 24031882 (+)
G1229883 NA non-coding downstream 235485 24074590 ~ 24075012 (+)
G1229884 NA non-coding downstream 236359 24075464 ~ 24076005 (+)
G1229894 NA non-coding downstream 252920 24092025 ~ 24092345 (+)
G1228466 LOC100136012 other upstream 982829 22853315 ~ 22853661 (+)
G1225840 NA other upstream 3140353 20695672 ~ 20696137 (+)
LOC110488973 nkap other upstream 3522380 20308619 ~ 20314136 (+)
G1225174 NA other upstream 3824013 20012015 ~ 20012477 (+)
G1231863 NA other downstream 2107607 25946712 ~ 25952747 (+)
G1231862 LOC106604502 other downstream 2123352 25962457 ~ 25966312 (+)
G1232217 NA other downstream 2316451 26155556 ~ 26156812 (+)
ube2d2 UBE2D2 other downstream 2861125 26699956 ~ 26711938 (+)

Expression

G1229061 Expression in all Baseline Samples

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G1229061 Expression in each Bioproject

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G1229061 Expression in each Sample
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Co-expression Network