G1229693 (znf518b)


Basic Information

Item Value
gene id G1229693
gene name znf518b
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 23869958 ~ 23873564 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1403347
TTAAGATAATACATAGAGGACAGAAAACACTGACAACATGAGAACAACTATAATTGTTATTATGAGAATAACTCCCATTTAAAAGTTGAGAGAAATTTCAAAGGAAACCAAAATACATGTACATTTAAAGATCCGCACCACATCTAAACAAGAGCTATATTTGATAAATATATTGTTATGGTCCAATTTAAAACATCTCAATATTTTCTCTGATACTTTTACAGAAAAAATTACAGAAAAACAGATGATTGAGGGAGCGGTTCAAACACTTCTAGCAATATACAGCAGTAACCATGACAAAAAGTCCAAAGAAAACATGAATGGGATAAAAAGGGATAAAGATGGCAGGAACCACCTGGAATGATGGTTAAAaatgtaaaagtaaaaaaaaaggtTCAATAGAGTAGCACTGAGTTACTTTGCTCCACTAGGAACTTAAAAGGTTAATGTCAAGTCAGTCAACCCTAATAAATGCTAAATATAAAACAGGAATGATGAGGTTGGATAATATAACCAAACTTTTTTCAGAGCTTCAATACAAAAAGTCAGTGATCAATGGAAAGAGGTTTAGCATGAACATTCTATTCACCATGTGGTAACATTTTCAGAATTCTGTAGTAGGATTGAcaactatttatattttgatgtAAAAACACTGGTATTGGGTGGCAGCTCTAGCTACAATTGCTTTTTTCAGAGACAATGGCAGAGAAATGTGCCTGGTCTTTCGATGacagttgaaaaaaaaaatcccttgCTGTCCTCATGGCTATCATTCTACACACTATTTTTGTGTAGCTATTTATTTAATTAAAGAGTGAGTTATCAATTTAAATACTCAAAATAACAAATTAGTAACGTTGCTGACTGCGTTCGCTGGTGTTCTAGTCTCTCAATGCAGTCCGGCTAAAAGTAACCAGGAGGTTACATGTTATTTTATTCAAAATGCATTCAAAATAATTGACATTGATTTAATTTAAGCAGTTGTTCATCCATCAGAAAAAAAGTACAAGTTCATTCAAATATACAATCATATTTACACATATCTGTGCTATCAATGATACTGCAGCAAAAATGCtaattgtttattattatttatttattttaaatacgCCTGCCTGAATGCCCACTTGTTTCTCTCAATGGGGTTCAGTCTTTCATAATCTATGaagtaacatattgtatgaaatGTCTAACCATTATTAATCTGAAGCTCAGCTAGGGACCCTGGAAATGAGTGCAAGCCAACCCTTAATGGCGCAATGCATCGCTCTTGTCTTGATAACTCAATGTTTAGTGTTCTGTTCCCAGCAAATAAATCTATCATTTTCCATAACAATTTGTCATCACCCTAAGGAGAGGCCTTAACGGTACATCCAATCACCTCATACGTATGTCCCATTACTTTGCTCAACTTCATTTTCATTATGTGACATGTTGGACCAATGTCTGGAATCGTCTccattccccccctccctctcagaACCAGAGGCTTGGGATGAATGAGAGCTTCAGGCAGGAAGAGAGTCTACCAGAAATGTCACGCTTGTTTGCTGAACTTTTCCAGTGTCTGGGGACTGACCCTTTTTCAGTGTTAATTTGGCCAATCCAACTGTCCCGTGTGTTTACTGTTTTTTTTTGAGGACTTTTTTTCATATTCAAAACTGTTTTCTTTAGAAGCTTTATTGTAACACTGTTATTTTCCCCCTTGGTGCTCAAGGGATTACTTGTTAGTGATTGGGTGTGTCTAGAACATTGAGCACTCTGCATCTGGTGACAGGCTTTTGAGGTCATTTGAGGTGCATGAACAGAGGACAAACCCTCAGGGGCCATATCAGTGTTTATTGGCTTTATCTTGTGTTCATGCCCTTTGCACACTGCTGTTGTCTTAGCAGGTGTGAGGATCAAAGAATTCTTGACATTTCCTTGCTCTACCGTTGCAGAGGGTGAATTGTTACCCAAAGCTATGGTCCGAAGAGCCACCGCCAAGAGTTGAGGGCTACTTAGAGAAAATACAGCTGAAATGACTGGGAAACCTTTTGGTCCTGGCATGTCATCTACTAATGGATTCTCAGATTGAGTCCAACCAGAGGTATTTGAGTCAGCCACATGACAAGTCTCATCCTCTTTAGGTTGGTTTGTTGGAGAGGGAATGACCAGGGTGCTACTTCTAGGGTTGCACAATACAAGAGACGACATTGCAGCAGGTGCAACAGAGGGTGATTTGGTGCCATTGACATTTCCCATCATGGATACACTCGAGACAGCTGTAAATGAAGTCAAGCGTTCAGATTTTTGCCCAGAATCACAGTTCTCTTCCTTCACTTCCTCTTTCTTTATCTCAAATGGCTGATTTACATCTTTCACCATCACCAGCAACTCTTCAGAGTGTTTTTTCAGTTGTATGCCATTTGTGTTGGGGGCAGTTGTTAAATCCTTTTGTTTCTGGTTATTTATTTGTCGGGTTGATATGTTGGCTGTGCAAGTTCTCTTCTTCACTGGCTTTTCTCTAGTTGGAGTGGCGTTGGACATCGATGATTTACACAAAGTGGCATTTTGTGAGGTTGTGGTCCGACAGGCTTTCGCTACAGACCCATTAGATTGTTGTGAGACAAGTCTCAACTTTAGTTCCTTGGTGCCATTGACTGTTTTCACCTCAACAAGTTCAACAAGGCAGCCAGGGGGGATGGTCCCCACTTCAGGGAAAGAGACAGTCAAAGGCCTGTTGTGTTGAATTGGTTCATTTAAAGGTGCCAACAGCTCCACCTCTACTTTGGGCAATATGTTTGCATCCAGTGTCCCATCCATAGGTCTTCCTTCATCCACTCGTCTTCCTTCATCCACTCTGGTTGTGATATTCTTAGTGCGCAAAGGTGCGACCCTTGTATTTAAGATCCCTGATAATGTGGGATCTCTGGGCAGAGCACTGGGGAGAGAGGCCGGTTTGGGAGCTCTGGGCAAAGCAATGGATACTTTCTCAGGAGGCGCATTGTGTATTCGCTTCATATGCATTTCAACATAGTCTTTCTTCACAGCTCTATAATCACAGAACTGACACTTGAAGGGGTGTACTCTGGTGTGCTGTTCTACATGGTGGTTTAATTCGGCCTCGCTGTATGAGACATGGTTACAATAGAAGCAGTAAAATCTCATTACCGCATGCTCCATAATATGGCTGCTGTATTCATCAAAATCTGTGGTCAAAAAGCGACATTTCTCACAAAACCAAACTTTAGAGTTTTTGAATTTGGAATTTACCACACACTCAAAGTCAAACTCATCTGGCCTTCTTGAATCCTGCACAAATGAATTGTGAGTGTTTTGATTTGCAGGACTCCCATTTGATAGGTTGCTCAGACCTGCTTCTCCAGGTTGGGATGTCTT

Function

symbol description
znf518b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

NR:

description
uncharacterized protein LOC110489012

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1403347 True 3384 TUCP 0.40 2 23869958 23873564

Neighbor

gene id symbol gene type direction distance location
gsr gsr coding downstream 3513 23856756 ~ 23866445 (-)
slc30a9 slc30a9 coding downstream 14448 23836456 ~ 23855510 (-)
LOC110489007 atp8a1 coding downstream 52811 23627296 ~ 23817147 (-)
trnaa-ugc-64 NA coding downstream 177296 23692594 ~ 23692662 (-)
LOC110487750 bend4 coding downstream 255671 23597045 ~ 23614287 (-)
LOC110489013 clnk coding upstream 20286 23893850 ~ 23929558 (-)
LOC110487751 NA coding upstream 62127 23935691 ~ 23936972 (-)
hs3st1 hs3st1 coding upstream 82326 23955890 ~ 23958865 (-)
LOC110487753 rab28 coding upstream 353255 24226819 ~ 24323671 (-)
nkx3-2 nkx3-2 coding upstream 459624 24333188 ~ 24335273 (-)
G1229653 NA non-coding downstream 78934 23787904 ~ 23791024 (-)
G1229537 NA non-coding downstream 275354 23594397 ~ 23594604 (-)
G1229529 NA non-coding downstream 287030 23582137 ~ 23582928 (-)
LOC110489005 LOC106604473 non-coding downstream 299148 23562444 ~ 23581796 (-)
G1229786 NA non-coding upstream 138589 24012153 ~ 24012394 (-)
G1229812 NA non-coding upstream 152032 24025596 ~ 24025873 (-)
G1229846 NA non-coding upstream 170575 24044139 ~ 24044475 (-)
G1229862 NA non-coding upstream 181565 24055129 ~ 24055512 (-)
G1229864 NA non-coding upstream 182233 24055797 ~ 24056500 (-)
LOC110488986 LOC106604455 other downstream 1636667 22228319 ~ 22233369 (-)
G1225875 NA other downstream 3146722 20723037 ~ 20723236 (-)
G1225647 LOC106604448 other downstream 3399435 20465730 ~ 20470523 (-)
G1225505 upf3b other downstream 3544739 20321778 ~ 20325219 (-)
G1225499 NA other downstream 3735905 20133711 ~ 20134053 (-)
LOC110489025 LOC106604425 other upstream 683169 24556733 ~ 24561862 (-)
LOC110489477 LOC106604496 other upstream 834397 24706395 ~ 24709307 (-)
G1232240 NA other upstream 2229782 26103346 ~ 26165403 (-)
kcnk4a LOC106604391 other upstream 3107146 26979968 ~ 26990318 (-)
G1233612 NA other upstream 3119229 26992793 ~ 26993184 (-)

Expression


Co-expression Network