G1230517


Basic Information

Item Value
gene id G1230517
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 24399766 ~ 24404614 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1404227
CTTTATCACGGTGCTACCGGACAGATTTCTGCCTGATTGAATGCCAATAACTCAGATACACATAAAATGACCCAGGGAATCGATAGACCAACACTCAGATACACAAAACAATAtaaaattcaaaatggatgaacctTTCCTTTAAGCatacagaggaagatcttcaatgaTATGTCGATCTATACGGCTCATTTTATTTTTTGGGACTGCCATCGCTATTGAATGTGTCTGTTTTAAAAAGGTTGAAATTAGCAGTTGGTGATTGTGACTAGTTAAAAAAAACGCAATCTCTCTTTGACATACAGAGGAAAGACTCTGCTGAGAAAGATAACCAACAAAATGGTTGTAGCTGAACTTCTAAGTAACTGCCTCTATTTTAACTCAATGAAGTCCATGTTCTCTAATGGGGCTGGGAATTTCTGGAGACCTCAAAATACAATATTATTACCATAATTAGGTGCTGTTATATTTATTTGCGATTCGATAGTGATTTTATTGAGATTCAATGTtcaaaacatattgctcaccatacgTCTTCCATACGTcttctgcagagggacaagagccatgagaaaactggttttgatcagtaatggaaataaaagtgctgaaaacaaattggctccctatttaaaaagaagatggagaacaaactATGAAGgcaaaatactggagttttgatACAGcctatcggatttcctgttatcaacatattgcctgatctcccagactatgttactagccttttccctgcctgtactgtttcccttttggaccccctgtgtatgactttctgcctgcccctggacccagatacctgcctcctcctgcagtcctttgcaataaacatctgctgcgccctgcgcttaaAACCAGtctcccctcgtgttcattacacTATCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1404227 True 903 lncRNA 0.39 3 24399766 24404614

Neighbor

gene id symbol gene type direction distance location
bod1l1 LOC106604486 coding downstream 31716 24344340 ~ 24368050 (-)
nkx3-2 nkx3-2 coding downstream 64493 24333188 ~ 24335273 (-)
LOC110487753 rab28 coding downstream 76095 24226819 ~ 24323671 (-)
hs3st1 hs3st1 coding downstream 440901 23955890 ~ 23958865 (-)
LOC110487751 NA coding downstream 462794 23935691 ~ 23936972 (-)
LOC110489019 LOC106604490 coding upstream 57981 24462595 ~ 24465973 (-)
LOC110489021 LOC106604492 coding upstream 71994 24476608 ~ 24479197 (-)
mcm7 mcm7 coding upstream 77061 24481675 ~ 24495562 (-)
LOC110487755 LOC106604493 coding upstream 92766 24497380 ~ 24537328 (-)
LOC110489025 LOC106604425 coding upstream 152472 24556733 ~ 24561862 (-)
G1230528 LOC107835492 non-coding downstream 2449 24397090 ~ 24397317 (-)
G1230196 NA non-coding downstream 29455 24369957 ~ 24370311 (-)
G1230104 NA non-coding downstream 201849 24197680 ~ 24197917 (-)
G1230101 NA non-coding downstream 206538 24192874 ~ 24193228 (-)
G1230535 NA non-coding upstream 1786 24406400 ~ 24406655 (-)
G1230539 NA non-coding upstream 6172 24410786 ~ 24411157 (-)
G1230541 NA non-coding upstream 7570 24412184 ~ 24412937 (-)
G1230515 fa55c non-coding upstream 22067 24426681 ~ 24433628 (-)
G1230576 NA non-coding upstream 128507 24533121 ~ 24533343 (-)
G1229693 znf518b other downstream 526202 23869958 ~ 23873564 (-)
LOC110488986 LOC106604455 other downstream 2166475 22228319 ~ 22233369 (-)
G1225875 NA other downstream 3676530 20723037 ~ 20723236 (-)
G1225647 LOC106604448 other downstream 3929243 20465730 ~ 20470523 (-)
G1225505 upf3b other downstream 4074547 20321778 ~ 20325219 (-)
LOC110489477 LOC106604496 other upstream 303347 24706395 ~ 24709307 (-)
G1232240 NA other upstream 1698732 26103346 ~ 26165403 (-)
kcnk4a LOC106604391 other upstream 2576096 26979968 ~ 26990318 (-)
G1233612 NA other upstream 2588179 26992793 ~ 26993184 (-)

Expression


Co-expression Network