G1230515 (fa55c)


Basic Information

Item Value
gene id G1230515
gene name fa55c
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 24426681 ~ 24433628 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1404225
ttgcatggactcactctgtatgcaatagtgtttaacatgatttttgaatgactacctcatctctgtaccccacacacaaatATCTTTAAGGTTCCtcggtcgagcagtgaatttcaaacacagattcaaccacaaagaccatggaggtttttcaatgcctcttAAAGTAGGGCACCTAATGGTAGATGGGTAATAAAAAAATGCATGGtccatggtgaagttaataattacactttggatggtgtatcaatacacccagtcattacaaagatacagttgTCCTTcatgccaatggtgactttaaaatagttagagtttaatggctatgataggacaaaactgaggatggatcaacaacattgtagttgctccacaataccaacctaattgacagagtgaaaataaggaagcatGTACATTATTAAATATTCCCAAAcattcatcctgtttgcaacaaggcactaaagtaatactgcaaagcaattacatttttgtcctgaatacaaagtgttatgtatAGGTAAAATCCaaaacattactgagtaccactctccatattttcaaacatagcggtggctgcatcatgttatgggtatgctcgtAATCATTAAGCCCTGGGGAGCAGTGGTGAAAACAGTACctaaatgtcatacttgagtaaaagtacagatGCCTTAATAGAAGTAAAAGTACAATTAAATAAGTAAAACACTAATTGATTAAGAGTCTAAAagttttgttttaaatatacttaaatatcaaaagtgtaattgctcaaatatatttaagtatcaaaaggtaaagtataaatcatttaaattaacttatattaagaaaaccagacgACATCGTtttcttgttttaaaaaaaatgtacggacggccaggggcacactcagatataatttacaaatgaagcatttgtgtttagtgagtccaccagatcagaggcaatagggatgaccagggatgttctcttgagaagtgcatgaattggaccattttcctgtcctgctaaggagtacttttgggtgtcagggaaaatgtatggagtaaaaagcacattattttcttcaggaatgtcaAAAACATATATTGTAAAAATAACTGCTGGAGAGTCCTTAACAAAACAGAATGGATCTGAGCACAAGAAAAATCCTAGAtgtaaacctggttcagtcttctttccaacagacactgggaaattcacctttcagcaggacaataacctaaaaaacaaggccaaatatatactggagttgcttaccaagaagacagtgaatgttcctgagtggtcgagttacagttttgacttaaatctgcttgaaaatctatggcaagacttttAAAGGGTTAtctagcaatgataaacaaccaatttgacagagcttgaagaattctgaaaagaataatgggcaaatgttgcacaattcaggTGTGGAAAGCATACCCAGAACGGGTGTGAATCTTACATAAATTACATttaatgttttcactttgtcattatggggtgttgtgtgtagacgGGTCAGAAAACAAAtccatttcatccattttgaatttaggctgtaaaaaaaaaaaattgaataagtcaaggggtatgaatattttctgaagacactgtatctaCCTCTTTAGAAGGGTCGTCTCCACCTTGGAGAGTACTGCCTGGTAACCGCCCATGCTGTGGTAGGTCAAAGCATGGCAAGGCAGGGAAGATGGCCGACGACAGAACCAGGTCTCCCCAGTGACTGGCTCTCTGTACTCACAGCAACACTGTGCGTCATTCCCCACCAGCCTAGGACTTCTCTGGGCATTGCACATCACCGTTTCCTGCTTGCCACCCTCCTCAAAGTAGCCTTGGAAGTAGACCTTATCTGGGTCCTGTTCCCTTTGCCTACACAGTACCTGCACAGCCTCGCTGGAGTGCACTAGgcggatggacaccttggcaggTCCGGGCCAAAGCAGGGCCAGACGGGCAGTGTAGGTGCCATTAAAGTGGTCTGTTACAGCTCCATAAGTACTGGCCTTAAGTTCTGAGTTAAACAACTTGGCCTGAAAAAAGTCCCCTCCATAGGTTTTGATCCTGTTTTTAGTATCTCTAGCTATCAAAATCACATCTATAAACCCTCCAACTGTGTGGTTTGAATTGGGGTTGACAACAGAGAATGAGCACTTAGTGGGGTTTGTGGCCTCATCTGTGGATAAGGGGACAACAGGCGGTAATGACCATTGTAGCTCTGTGAGCAGAGATTCCCATTCCTCTTTACTTATTGAGGAGTCATTGGTTGGTGTAAATGTCCTGTTGGTGATTCCACCACAACTTGTGAAGCTAGTGTGGTTGTATTTGAGATGATTGGATGGTGACACATTCAGCAGGCACTGGTTGAATT

Function

NR:

description
FAM55C

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1404225 True 2395 lncRNA 0.40 2 24426681 24433628

Neighbor

gene id symbol gene type direction distance location
bod1l1 LOC106604486 coding downstream 58631 24344340 ~ 24368050 (-)
nkx3-2 nkx3-2 coding downstream 91408 24333188 ~ 24335273 (-)
LOC110487753 rab28 coding downstream 103010 24226819 ~ 24323671 (-)
hs3st1 hs3st1 coding downstream 467816 23955890 ~ 23958865 (-)
LOC110487751 NA coding downstream 489709 23935691 ~ 23936972 (-)
LOC110489019 LOC106604490 coding upstream 28967 24462595 ~ 24465973 (-)
LOC110489021 LOC106604492 coding upstream 42980 24476608 ~ 24479197 (-)
mcm7 mcm7 coding upstream 48047 24481675 ~ 24495562 (-)
LOC110487755 LOC106604493 coding upstream 63752 24497380 ~ 24537328 (-)
LOC110489025 LOC106604425 coding upstream 123458 24556733 ~ 24561862 (-)
G1230541 NA non-coding downstream 13744 24412184 ~ 24412937 (-)
G1230539 NA non-coding downstream 15524 24410786 ~ 24411157 (-)
G1230535 NA non-coding downstream 20026 24406400 ~ 24406655 (-)
G1230517 NA non-coding downstream 22067 24399766 ~ 24404614 (-)
G1230530 NA non-coding downstream 23355 24399483 ~ 24403326 (-)
G1230576 NA non-coding upstream 99493 24533121 ~ 24533343 (-)
G1230587 NA non-coding upstream 105471 24539099 ~ 24539701 (-)
G1230590 NA non-coding upstream 110746 24544374 ~ 24544800 (-)
G1230591 NA non-coding upstream 112831 24546459 ~ 24546726 (-)
G1230592 NA non-coding upstream 114777 24548405 ~ 24548839 (-)
G1229693 znf518b other downstream 553117 23869958 ~ 23873564 (-)
LOC110488986 LOC106604455 other downstream 2193390 22228319 ~ 22233369 (-)
G1225875 NA other downstream 3703445 20723037 ~ 20723236 (-)
G1225647 LOC106604448 other downstream 3956158 20465730 ~ 20470523 (-)
G1225505 upf3b other downstream 4101462 20321778 ~ 20325219 (-)
LOC110489477 LOC106604496 other upstream 274333 24706395 ~ 24709307 (-)
G1232240 NA other upstream 1669718 26103346 ~ 26165403 (-)
kcnk4a LOC106604391 other upstream 2547082 26979968 ~ 26990318 (-)
G1233612 NA other upstream 2559165 26992793 ~ 26993184 (-)

Expression


Co-expression Network