XLOC_031319 (riok2)


Basic Information

Item Value
gene id XLOC_031319
gene name riok2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 41639693 ~ 41645058 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060794
AAAGTTATGAAAGCAAACAAATATCCTTTAGGTTTTATAATCTATGATAAAGCTCAATGATAAAGTAAACCTCCTCTAGCACGAAGTGCTGTTTGAGCATGATTGCAAATGTGATCAGTTTTATACCGGAGTTCAGCAAACTAATTTATATTGAGTTGCATTTTAGACACAATGCTTTTTGAACTAATGAATGTGGTTGTAAGTTAAGGCAGAGTAcaatatttgtgtattttctAATAATAAATCAGGCACTTTGGATGAATTACTTGCATGAATGATTCGACGAGCCACTCATTAAGACACAGACTTCagtgtcatatttatatattaataaaataacttctATTAATATGATTCATGCAATCCCACAGAGACCAACTGAGCCTCGAGAATGATCACAGGAGAAGAACAACCAGTGAAATGAGCATGGCAAGTGTGGCCAGTTGCTCTACAATTCCACCAGAGGTGATCAGGCAGAAGGTGAAGAGACAGCTGACCAAACAACAGAAGGCGGCTCAGAGGAGACGTCTGCATAAGGGGGAAGCCAACCTGGTGACCAAGGAGAGGAGAGAGAACCAGAACAACATCAAGAGCAGTCTGGAGACTGCTTCCTTCTGGGGCTGAGGATCTACTCACTCAGCCTAATGGAGAAATGATCTCAGGACTGCTAACGgttttcacttgtgtgtgtatataaaattgattaataaaacatCTAAATCTGCAA
>TCONS_00060795
CATGTGGAAGGGCTGGAAATAATATCGCCTTGTGAAAAAATTGGCAAAAAGGAGAAAACTTTTGAAATTTAGGAAACACCGACTGTGCCACTATGGGCAAATTAAACGTGGTAATCCTGAGGTATCTGTCTAGAGATGATTTTAGAGTGCTGACAGCGGTGGAAATGGGCATGAAGAACCATGAAATCGTGCCAGTAAGTCTAATTGCGTCCATTGCCAGCCTCAAACACGGAGGATGCAACAAGGTTTTGCGAGAGCTGGTCAAACACAAACTTCTGGCCTATGAGCGCAGCAAAACTGTACAGGGCTACCGGCTGAATTACGGTGGATATGATTACCTGGCGCTGAAGACACTTTCATCCAGAGATGTGATTTTATCAGTTGGAAACCAGATGGGAGTTGGCAAAGAGTCAGatATTTACATTGTTGCTAATGCGGAGGAGCAGCAGTTTGCTCTGAAACTTCATAGACTGGGCAGGACGTCCTTCAGAAACTTGAAGAATAAGAGAGATTATCACAAGCACAGAAACAATATGTCATGGTTGTATCTGTCTCGGCTCTCTGCCATGAAAGAGTTTGCATACATGAAGgcttTATATGATCGAGGATTTCCTGTTCCAAAGCCAGTGGACTACAACAGACACGCAGTGGTGATGGAGCTCATTAACGGTTACCCGCTGTGTCAGGTTCGAGAGATTCAAGATCCTGCTGCACTGTACAGCGAAATCATGGAGCTAATAGTCAAACTGGCCAATCATGGCCTGATCCACGGAGACTTCAATGAATTTAACCTAATGCTTGACGACAATGATCACGTCACAATGATCGACTTCCCTCAGATGGTCTCCACCTCACATATAAATGCAGAATGGTACTTTGATCGTGATGTCAAGTGTATTCGAGATTTCTTCATAAAAAGATTTAACTATGAAAGCGAACTCTATCCAACCTTCAAAGatatcagAAGGGCATGTTCACTGGATGTGGAGATCTCAGCTAGTGGCTACACAAAAGAGCTGCAGCAGGACGACAGTTTGCTCCACCCTGAAGGTCCTGAGAGTGATGGAGATGAAGACGATGAGAGCCCAGAGTCAACTGACGACACGCATCAGGCGTCTGCAGGGGACACTATCGACATGGAGGAGTTTAAACATGCCATGCTTGAGCTACAAGGGCTAAAAATAAGTGCAGAGACTTTATCAGAAGAGAACAACACAGAGCCTGAGGGAGCACGATGTGAGCAGGACGTCCCCTCAGAGGATCTTCAGACAGAAATGGTTTCTGGCATTTCTGAAGACTTGGGCAGAGATGAGGTGGAGGATGAGTGTCCTGATTTGGTTGACCTGTCTGCATGCAATAAAGAGTTCAGACCATTCAGAGACCAACTGAGCCTCGAGAATGATCACAGGAGAAGAACAACCAGTGAAATGAGCATGGCAAGTGTGGCCAGTTGCTCTACAATTCCACCAGAGGTGATCAGGCAGAAGGTGAAGAGACAGCTGACCAAACAACAGAAGGCGGCTCAGAGGAGACGTCTGCATAAGGGGGAAGCCAACCTGGTGACCAAGGAGAGGAGAGAGAACCAGAACAACATCAAGAGCAGTCTGGAGACTGCTTCCTTCTGGGGCTGAGGATCTACTCACTCAGCCTAATGGAGAAATGATCTCAGGACTGCTAACGgttttcacttgtgtgtgtatataaaattgattaataaaacatCTAAATCTGCAA
>TCONS_00060796
AATTAAAGATGTGCGTTAAggagtagttggacaggtgtaccaaacaagtgaccaGTGGAAATGGGCATGAAGAACCATGAAATCGTGCCAGTAAGTCTAATTGCGTCCATTGCCAGCCTCAAACACGGAGGATGCAACAAGGTTTTGCGAGAGCTGGTCAAACACAAACTTCTGGCCTATGAGCGCAGCAAAACTGTACAGGGCTACCGGCTGAATTACGGTGGATATGATTACCTGGCGCTGAAGACACTTTCATCCAGAGATGTGATTTTATCAGTTGGAAACCAGATGGGAGTTGGCAAAGAGTCAGatATTTACATTGTTGCTAATGCGGAGGAGCAGCAGTTTGCTCTGAAACTTCATAGACTGGGCAGGACGTCCTTCAGAAACTTGAAGAATAAGAGAGATTATCACAAGCACAGAAACAATATGTCATGGTTGTATCTGTCTCGGCTCTCTGCCATGAAAGAGTTTGCATACATGAAGgcttTATATGATCGAGGATTTCCTGTTCCAAAGCCAGTGGACTACAACAGACACGCAGTGGTGATGGAGCTCATTAACGGTTACCCGCTGTGTCAGGTTCGAGAGATTCAAGATCCTGCTGCACTGTACAGCGAAATCATGGAGCTAATAGTCAAACTGGCCAATCATGGCCTGATCCACGGAGACTTCAATGAATTTAACCTAATGCTTGACGACAATGATCACGTCACAATGATCGACTTCCCTCAGATGGTCTCCACCTCACATATAAATGCAGAATGGT

Function

symbol description
riok2 Predicted to enable protein kinase activity. Predicted to be involved in maturation of SSU-rRNA. Predicted to act upstream of or within protein phosphorylation and ribosome biogenesis. Predicted to be part of preribosome, small subunit precursor. Predicted to be active in cytosol and nucleus. Orthologous to human RIOK2 (RIO kinase 2).

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0006396 RNA processing biological_process
GO:0030490 maturation of SSU-rRNA biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0006468 protein phosphorylation biological_process
GO:0044238 primary metabolic process biological_process
GO:0000460 maturation of 5.8S rRNA biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0000469 cleavage involved in rRNA processing biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0000478 endonucleolytic cleavage involved in rRNA processing biological_process
GO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0090501 RNA phosphodiester bond hydrolysis biological_process
GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic biological_process
GO:0030684 preribosome cellular_component
GO:0030686 90S preribosome cellular_component
GO:0030687 preribosome, large subunit precursor cellular_component
GO:0032040 small-subunit processome cellular_component
GO:0030688 preribosome, small subunit precursor cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044452 obsolete nucleolar part cellular_component
GO:0005829 cytosol cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0034511 U3 snoRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0140098 catalytic activity, acting on RNA molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0004386 helicase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03008 Ribosome biogenesis in eukaryotes
ko04623 Cytosolic DNA-sensing pathway
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko01001 Protein kinases
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-040426-2913 Predicted to enable protein kinase activity. Predicted to be involved in maturation of SSU-rRNA. Predicted to act upstream of or within protein phosphorylation and ribosome biogenesis. Predicted to be part of preribosome, small subunit precursor. Predicted to be active in cytosol and nucleus. Orthologous to human RIOK2 (RIO kinase 2).

Ensembl:

ensembl_id ENSDARG00000035264

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060794 False 727 lncRNA 0.39 2 41639693 41640578
TCONS_00060795 False 1734 mRNA 0.46 10 41639693 41645058
TCONS_00060796 True 769 processed_transcript 0.45 6 41642305 41643920

Neighbor

gene id symbol gene type direction distance location
XLOC_031318 epg5 coding downstream 1654 41582643 ~ 41638039 (-)
XLOC_031317 dnajb5 coding downstream 78819 41542436 ~ 41560874 (-)
XLOC_031316 akr1a1a coding downstream 108064 41521043 ~ 41531629 (-)
XLOC_031315 eef2l2 coding downstream 144862 41485277 ~ 41494831 (-)
XLOC_031314 NA coding downstream 165433 41464093 ~ 41474260 (-)
XLOC_031320 atxn2 coding upstream 421 41645479 ~ 41709234 (-)
XLOC_031321 alkbh2 coding upstream 155024 41800082 ~ 41804398 (-)
XLOC_031322 si:dkey-65b12.6 coding upstream 181900 41826958 ~ 41845116 (-)
XLOC_031323 CR931763.1 coding upstream 208380 41853438 ~ 41855394 (-)
XLOC_031324 si:dkey-65b12.12 coding upstream 212392 41857450 ~ 41860556 (-)
XLOC_031312 CR753861.2 non-coding downstream 456441 41183136 ~ 41183252 (-)
XLOC_031309 BX470118.1 non-coding downstream 635431 41004148 ~ 41004262 (-)
XLOC_031306 NA non-coding downstream 809860 40810788 ~ 40829833 (-)
XLOC_031304 NA non-coding downstream 925701 40557232 ~ 40713992 (-)
XLOC_031330 NA non-coding upstream 439946 42085004 ~ 42091969 (-)
XLOC_031333 BX548073.5 non-coding upstream 607151 42252209 ~ 42253313 (-)
XLOC_031334 NA non-coding upstream 625977 42271035 ~ 42273074 (-)
XLOC_031335 BX548073.4 non-coding upstream 656066 42301124 ~ 42306483 (-)

Expression


Co-expression Network