G1233574


Basic Information

Item Value
gene id G1233574
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 27247454 ~ 27249053 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1407668
TTTAATATATTCAATGCCAGATGCCAACTTCACATGTTACTTAGCAGTGCATTAACAAACTCTATAGCCAGGCCAGTATTCAATTGACTGTAGGCCTTCTTCACACTGGGTGAATGTTTGTTACGTTATTACCTGTGTGGTTTACATTTTGTCTGATCCAAATCAAAGATCAGAAAATCAGTTCACTTCCGTGTGTGTGATTTTTCATTTACTCATGTACCAGTATGTGAATATTGTTTTTGAATATTTaccaaatgtatgtgtgtgttcttgggtGCTTTTCAGTAGTTTGACTTTGTTTGTTCTTGACCACATGAAACATCACCCTCCCCCTCAATAGTTGATGTATTGTCCATCATGGAGCAACAGGACACAACATTCTCTCAAAGATTATCTTTCCAAATTCTGTCAAGTTAAAAAAAACTATGGATTGTTAGATCTTGTCATGTCTAGTCTGTGCGGAGCATGATAAAATAAGATTAATGATAAGATAAGATTCCCTATGTATTTTAGTGCTCAATACAGCCTCACTCCCCTTCTCAAACCCATATATTGTTACATATTATCTTTCATCTAGCTGGACGTGGCTGCCTTCTCGCCGTCCGCCCCAGCTTCTGCCTCGTCACCTGCCTCCACCTGTCCGAACTGCAGCAGTTTGAACACAGTGGTCTTGACATCCATCAGGGTCTCCTTAACCCCCTTCGCCAGGATGTAGCCCTCGCTGTCAGCTTCGGGGTTCTCCGGGTCCACGCCCTCCAGAGACGTGTGCAGGTACCGCAGGCTCACCAACACTGATATCTGTACGGAGATGACCGACAGAATCCCGGGGCCAATGGTGTTCATGAGGCCCATGTAGTAGTCGACCAGCGCCTGTCTGCAGCCGCGGTTGTACAGGTTCAG

Function

NR:

description
peripherin-2-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1407668 True 900 lncRNA 0.44 3 27247454 27249053
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110489055 NA coding downstream 18556 27222807 ~ 27247113 (-)
scyl1 LOC106604377 coding downstream 26996 27202019 ~ 27220458 (-)
ints5 LOC106604380 coding downstream 65153 27178502 ~ 27182301 (-)
ganab LOC106604381 coding downstream 73591 27153707 ~ 27173863 (-)
si:ch211-114c17.1 LOC106604382 coding downstream 93972 27141476 ~ 27153482 (-)
macrod1 macd1 coding upstream 35391 27284444 ~ 27403504 (-)
rnaseh2c rnh2c coding upstream 180255 27429308 ~ 27432335 (-)
LOC110489047 LOC106604353 coding upstream 183410 27432463 ~ 27437526 (-)
LOC110489046 LOC106604367 coding upstream 217375 27466428 ~ 27470738 (-)
pola2 pola2 coding upstream 221806 27470859 ~ 27476807 (-)
G1233594 NA non-coding downstream 69959 27177065 ~ 27177495 (-)
G1233598 LOC106579815 non-coding downstream 71264 27175307 ~ 27176190 (-)
G1233596 NA non-coding downstream 72347 27174290 ~ 27175107 (-)
G1233605 NA non-coding upstream 30018 27279071 ~ 27279670 (-)
G1233684 NA non-coding upstream 38037 27287090 ~ 27287489 (-)
G1233687 NA non-coding upstream 54554 27303607 ~ 27304382 (-)
G1233688 NA non-coding upstream 56247 27305300 ~ 27306157 (-)
G1233702 NA non-coding upstream 76641 27325694 ~ 27326058 (-)
si:dkeyp-115e12.6 LOC106604388 other downstream 246150 26995966 ~ 27001492 (-)
G1233612 NA other downstream 254270 26992793 ~ 26993184 (-)
kcnk4a LOC106604391 other downstream 257136 26979968 ~ 26990318 (-)
G1232240 NA other downstream 1082051 26103346 ~ 26165403 (-)
LOC110489477 LOC106604496 other downstream 2538147 24706395 ~ 24709307 (-)
G1234483 NA other upstream 797525 28046578 ~ 28050952 (-)
med7 med7 other upstream 883887 28132248 ~ 28134104 (-)
G1234578 NA other upstream 965270 28214323 ~ 28215776 (-)
G1234595 NA other upstream 991866 28240919 ~ 28242820 (-)
G1235679 NA other upstream 1970375 29219428 ~ 29220097 (-)

Expression

G1233574 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.5.
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G1233574 Expression in each Bioproject

Bar chart with 7 bars.
G1233574 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 800.
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Co-expression Network