XLOC_003133


Basic Information

Item Value
gene id XLOC_003133
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 1951631 ~ 1952594 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008378
tatcAGCCCAGTTTACAGGGCTCCCCGGAGACGACGCTTGGGCAAAGTGTGCTAGAGGACAAAACCGAAGAGGTATTTTAGCATGGGTTTCCAATTGAAATAAAGGGCTTAGATCGACAAAGCACTCTATTAAATCCCAGCTAGCGTTTAGGTTTTAATTAATCCTGCAAACGAAGACCTGGAAACACATTAAACTGCAGTGTACTAGGTGTACTCGGGCCATTTGTGTCCCCAATTCCCCAAATTAACCTGATTTGCTGCAGTTTGCACAGTGAGTGATGACTTGTGGGATTTCGGAGTACCCGCACTAATAAATCAGCGCTGTGAGGGAACTGTCAGAACAGGGTGTAAGGCATCGCTGCAAACAGTACAGAGCAGATGGTGGATGTCGGGTCGAGAAAATAAAGCCGAGAAATGAAAGTATGTTGGAGATGCGCAGATCGAGGAGTGCTGAGTAGTCGAAAGGTGTTTGTTTACTGACCCAACAGCATTCCTAACACCAAGCATGTGTAGTTATACATTCCTTaagtgcttttcttacttagatttttttttgtcttgtttcatgtTTCACCCCAAATATCTAAACAACTCTTAAATCgggaaacattttctagacagcTAGACAGTcttgttttcacaaaaaaaaactctgaaattTAAGATTTAAGCAAGATTTTCCTTCAAGAAACCTGTTTATCATTATTTTGATTACTCCACTagcagattatttaaaaaaaaaagcatgtgtaGTAACTCTAATGCTAGTCTTAATggacactcactggccactttattaggtacgcctatCAAACTGctggttaacgcaaatttctaatcagccaatcacatggcagcagctcaatacatttaggcttgtagacatggtcaagacaattcGCTGCaattcaaagcgagcatcagaatggggatttaagtgactttgaatgtgacatggttgttg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008378 True 964 lncRNA 0.41 1 1951631 1952594

Neighbor

gene id symbol gene type direction distance location
XLOC_003131 rbms2a coding upstream 31114 1867613 ~ 1920517 (+)
XLOC_003130 lrp1aa coding upstream 87343 1628538 ~ 1864288 (+)
XLOC_003129 si:dkey-40c23.2 coding upstream 333544 1584747 ~ 1618087 (+)
XLOC_003128 si:dkey-40c23.1 coding upstream 369175 1575435 ~ 1582456 (+)
XLOC_003127 mybl2b coding upstream 376975 1551603 ~ 1574656 (+)
XLOC_003134 rargb coding downstream 136867 2089461 ~ 2096469 (+)
XLOC_003135 hoxc13b coding downstream 203836 2156430 ~ 2162821 (+)
XLOC_003136 hoxc12b coding downstream 219741 2172335 ~ 2175033 (+)
XLOC_003137 hoxc11b coding downstream 227478 2180072 ~ 2185174 (+)
XLOC_003138 mir196c coding downstream 238027 2190621 ~ 2190730 (+)
XLOC_003250 BX324177.11 misc downstream 9393209 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 9420292 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 9433768 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 9465439 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 9476799 11429393 ~ 11429689 (+)
XLOC_003126 AL935272.1 non-coding upstream 405400 1546117 ~ 1546231 (+)
XLOC_003118 FQ311892.1 non-coding upstream 1220708 730807 ~ 730923 (+)
XLOC_003112 NA non-coding upstream 1407437 543348 ~ 544194 (+)
XLOC_003109 NA non-coding upstream 1446802 474380 ~ 504829 (+)
XLOC_003139 NA non-coding downstream 245936 2198530 ~ 2205798 (+)
XLOC_003140 NA non-coding downstream 355615 2308209 ~ 2320355 (+)
XLOC_003149 FQ790208.1 non-coding downstream 662476 2615070 ~ 2616023 (+)
XLOC_003156 CT583672.1 non-coding downstream 874959 2827553 ~ 2828675 (+)

Expression


Co-expression Network