XLOC_003136 (hoxc12b)


Basic Information

Item Value
gene id XLOC_003136
gene name hoxc12b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 2172335 ~ 2175033 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006196
ATGGGCGAGCATAATCTCTTTAATCCGGGGTTTGTTGGACAATTGGTTAACATTAATGCAAGAGATGCATTTTACCTCTCCAATTTCCGTGCGTCGGGGGGACAGCTAGCAGGACTGCAAACCCTCCGCTTATCCAGAAGAGATAATGTCTGCTCTTTGCCTTGGAACCCATCGGAAGCATGCAGTGGATACCCACAATCTCATATTAGCGGCCCCGTTACCCTAAACCACACATACAATCAATCATGCGACATTACTCGGCAGgaagacaacaaatgtttttatagtGACAGTGCATGCGCCACCAGCGGCGGTGGTGACAATAACAGTACCAATCTTATATCAAAAGAGAAAGCATTGGATAACTCATCTGTATCCATTACTGCAGAGAACGGACAGAACAATCTGAACGGAATGGACAACGGAGGAAGTTATTCAAAATATGACTGCCTGACACCTGCAGAACAGCCAATCCCAAATCCTCGTTTGTGTCGGTCTCTTGAATCGGTTTCTGGCTGTTCGTTCATAAACGAGGGGGCCAAGACCTCATCAGGCATCACGCATTCACTAACATCCCCTGACATCCAAACAAGTGTTGCAGCACTAAACGGAGgtgCTCTGTGGTACCCAATGCACAGACAAACTCGAAAGAAGCGTAAACCATATTCAAAACTTCAGCTGAACGAGTTGGAGGGCGAGTTCATCCTCAACGAGTTCATCACCAGACAGCGGAGGAGGGAACTGTCTGACCGGCTAAATCTCACGGACCAACAAGTGAAAATCTGGTTCCAAAATCGTCGAATGAAGAAGAAAAGGCTCTTGATGCGAGAGCAGGCTTTATCTTACTTTTAGAGCAATGGATGATGTTGGATTATACATAAACTGGCAACAGGACATGCTATTTGAACATATTTCTGATTGTTTGCAAATTACACACATGCAGTTGATATGTATGACGCATAGTATCAGTTCGCTGTGcacaaataataattcattcttgGCCATTAAGTAACCACTACAGTTCTTAGTAACGCATGGAATTACACGAGAAATATAAAACACCCTGCATCATGCATACATCTCGAAAAGCTTGCTATACACAACAGAAGTGTTAATATAACATCAggacaataattaatatatttattattgttgttaataaaaacaacagttttaaaacaataataaagcttttatttttttctgcaacaCTGTGCATAGCTTAAATGCCTCAAAATGTGATTCCATCATGCACCTTCGTACAAACAGCACATTAAAGGCAAAGCTGTAAATGTCGAACTATTCAAAAGTTTCATTAGATTTCCTAATTTTTGTTTATGCAAATTGGTGGAAAATTCCTATGAACTGATATCATCTCAATCTGCTCACGCCCAGCGGTTGAGGTAACAGCTTACAGTTTTactgtttactttaaattctaTACAAATCGTACGATTTATATATCACAACTGGTGGAACTTTCACCCAAAAAGATTAAATATGATAACTGCAGGTTTTCTGCGGGTAAGGGAACAGATAAAAGATTGCCATAAGGCCATCCTAGTGGCAATTTTAGCTTGTAAGTAAAAATGAAGCTGTGATAGCCAATTTTTGGTGCTTCGGTGATGTCCAGACAAAAGGGCAGACCGCGGATATGTCCCTGATACAGTATTTGCATGCGAAAGTGCTTATAGCGCTAGTTTACTGAATATTCAAAGCAATGTATAGTGTTATTGTGGATAATAGGAATTTATAATCAGTgcaatgtcttgtttttgttaaaacatGTTACCTGGTGGTAAATGTCTGTTACACCAATAAGTATTAAATGATTGAGTCAGTGTAAGTGTgcaattaatttctaataaaagTGGTCACCTGTGTAACTGTTACCTGTGTTGTGTTATTGTCTGACAATAACATAATCTGGTATTTtgcattatttgttttaatataaaaaacgTCCTCTTTGCAACAAATAATATCACGCGAAATGAGCATGCATTTTTTATTGCTAAATATtgttgctaaaacaatatatttcccTTTTCGTATTAGGAATTAACTATAACTAAATTTTCTAATAGGGTAACTTAAATTATTTTGTGAATTTGTCACTTTGGGAAATAATTCACTcgggtaaagttgattttatattcgtTAAATTcgattcgttcattcatttttgaacagtgacaatatgtgacgctactttgaatattcggcctgaaatcgcatgcaagtatgacttcaaaacaacattagcactatttatttgattgtGATCAATGTTGTGcattgatagtcattggctgctaatgtgatttagagttatttagagtttgcaaagaatACATTTCTGAAATTGTGTATTAGGGAGAATGTCTGAATGTGCAGCTATCAACATTTTTAGAGTTTGTTAAAGT

Function

symbol description
hoxc12b Predicted to enable sequence-specific double-stranded DNA binding activity. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in central nervous system; mesoderm; musculature system; neural rod; and post-vent region. Orthologous to human HOXC12 (homeobox C12).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-000329-17 Predicted to enable sequence-specific double-stranded DNA binding activity. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in central nervous system; mesoderm; musculature system; neural rod; and post-vent region. Orthologous to human HOXC12 (homeobox C12).

Ensembl:

ensembl_id ENSDARG00000103133

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006196 True 2426 mRNA 0.38 2 2172335 2175033

Neighbor

gene id symbol gene type direction distance location
XLOC_003135 hoxc13b coding upstream 9514 2156430 ~ 2162821 (+)
XLOC_003134 rargb coding upstream 75866 2089461 ~ 2096469 (+)
XLOC_003132 NA coding upstream 174925 1935684 ~ 1997410 (+)
XLOC_003133 NA coding upstream 219741 1951631 ~ 1952594 (+)
XLOC_003131 rbms2a coding upstream 251818 1867613 ~ 1920517 (+)
XLOC_003137 hoxc11b coding downstream 5039 2180072 ~ 2185174 (+)
XLOC_003138 mir196c coding downstream 15588 2190621 ~ 2190730 (+)
XLOC_003139 NA coding downstream 23497 2198530 ~ 2205798 (+)
XLOC_003140 NA coding downstream 133176 2308209 ~ 2320355 (+)
XLOC_003141 igfbp6a coding downstream 216436 2391469 ~ 2397974 (+)
XLOC_003250 BX324177.11 misc downstream 9170770 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 9197853 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 9211329 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 9243000 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 9254360 11429393 ~ 11429689 (+)
XLOC_003126 AL935272.1 non-coding upstream 626104 1546117 ~ 1546231 (+)
XLOC_003118 FQ311892.1 non-coding upstream 1441412 730807 ~ 730923 (+)
XLOC_003112 NA non-coding upstream 1628141 543348 ~ 544194 (+)
XLOC_003149 FQ790208.1 non-coding downstream 440037 2615070 ~ 2616023 (+)
XLOC_003156 CT583672.1 non-coding downstream 652520 2827553 ~ 2828675 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location