XLOC_003137 (hoxc11b)


Basic Information

Item Value
gene id XLOC_003137
gene name hoxc11b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 2180072 ~ 2185174 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006198
ATGTTCAACTCTGTCAATATAGGCAACTTCTGCTCCCAGTCTCGTAAAGAAAGGACTTCCGAGTTCGGTGAGCGGGCGAGCTGCGCCTCAAATCTGTACCTCCCCAGCACCTATTATGTCCCAGAATTTTCTACAGTCTCTTCGTTTTTACCACAGGCCCAGTCACGGCAAATAACTTATTCCTATTCCACTAACTTCACGCAAGTACCGCAAGTGAGGGATTTGCCATTCGAGTTGAATCCGTCGGGAAAGTGGCACCACAGGGGGAACTATTCATCTTGTTATGCGGAGGAGGACTTAGTGCACAGAGATTGCCTTCCGCCGTCAGCCACCATGACGGAAATGTTGATGAAAAACGAAAATGTCTACAATCACCACCACTACCACCCGGCTATTAACCATCCCGGCACTGGCTTTTACTCGAGCATCGGAAAGACCAACGTTCTTCCGCAGAGTTTTGATCGTTTTTTAGACTGTGCCCAGAGCGGAGCAGATGGTGGATCTGAAGGTAACTGTTTGCAGAAAGGCAGCTCTGGAAAGCCGGAGTCGGCGTCTCAAGTGTCTTCAGTTCTCCGCAGTACTGCAGATGGGGAGAAAGAGCTTGAGTGTGAGAAAAACACTACCTCGGGTTCTTTTGAAACCTCGTCGGGAACAAAAAACGACAACCAAACCAAATCCGGTCACTCTACTACTCCGCGAATGAGGAAGAAGCGATGTCCATACACCAAGTTTCAGATCCGAGAACTCGAGCGAGAATTCTTCTTTAACGTTTACATCAACAAGGAGAAACGGCTTCAGCTCTCCAGAATATTAAACCTTACTGACCGACAGGTCAAAATTTGGTTTCAGAACAGACGAATGAAGGAAAAGAAGTTAAGCCGAGATCGCCTACACTATTTCTCTGGAAACCCGCTGATGTGAACTGTGAACATTTCTCCGAGGGACAAGAAGTATGTTATTTCTGAAAGGAAATTAAACCGATTTTGTTTTCAGACAATAATGGCATGTGTACTGAAGTGGATATTCTCAGAAAGAGACTGGCGTGagggaaaaaattaaaactgtcatttttgaaaaatcattttttgtttcaatGAGAAGATCCTCAGTATTTAACctccattattattactattatcactattataattattactgtaTTGATCAAAAAACTGTTTGAAAACACAGGAATATTGTAATCTTACATCAACATGCTATGCAATTAAAACCAATATTCCAAAATAGGGGCTGTGGTTCgtgtatatttgtatttacttGAGCTGACTGTTTTGCCGGTgcgacaacaataataataataataataataataataatagacggGAAATAGGAAAGGTTAACAGCTAAAATTATAGTGTTTTAACAAAGGTTGTATTTTTCATGATAAAGTCATACgcataaatatgttaaataaattttagctattttttaatagacagttattaaattacattacatatttgtttatatagAAACTTAAAAACGTTTAATTCACTATTTACTACACCATATTCCAATACCAATAGAATCATGAAATTACACGTATAATAAAATGGCTAAACTTAAATGCAATATAAAACACATGTTCAACTACTTATGTAAACAATAATACAATTCCACTGCTTACAAATTTAACAATATTTCTTTGGAATTTTCGTAGTGAGCACATTTAAGTAAACTGCAAGGAAATTCGCttgattaaaaaaagttatttaacaaCAGGAACAACAAAAACATCTTGGCATATTTGGTGTGTCCTTATGTGTAGGAGAGAGCGTGAAGTGGGAAGACAGCACTAAAAGTATTTTTCAATGGTCGTTTGGAAACTCTTCAAGTCTAGACACAGTCGTAAAGGCATACAGGCGAGAGCTGGTTTTCCGCCTAATTGTACCTGAGGCTGAACTGAGATTTCGTCTTCTGTCAGAAACAGAAGGTCTCTTTTATATTTGCACTTTTAGGGTATTAACACCATTATATACACGTGAATGCCCAGTCTAAAAATATCTAGTTGTTTAAACAACAACGAATAAATGTTCAATATATACAATCTGTTTACAACAGCCCTACACCAAGCAGAAAGTCTACAACGTAAGCAGCTTGAGGCCAtgcacattgttttttattttatttatatatcctACAAGcatggattgctttgaaaatacatatataatttaatttaatgttaattttattcAAATTGGATTCTCAGTTTGGTTTTGGTGCTAAATCACTACATGCAACATGACAAGTGACTTTGGACTTGGCCCGCAGATTTTTACCGCCTAGGTCATGCCGGGTCACGCCTACGAAAGTCCTCCCATTTTGTCCGCCCCTCCCTAAAATGAGCGCATCTTTCTATAGACTAAAAAGCAGCTGAGAATGGACGGTAACTCATAGAAGCTTTCTCTTCAAGCGTCCTTGTGCGCCCGACTTACACAGCAGGCATCTTTATAATCTTGTGTGCATTTCGGCATTTCCCCATCGAACCAATTACCTAGCTATATAGCCTAATAGTTTTGTAAAGCTACATAAAGCAAGTCATCATTTCAGTAAATGCATCTCATCCATATAGGAACAATTAATTTCTTATTTGCTCATTGTTACGAATGtaccaaaattaaaaaataacttaaCCTTGTCTGTTTGTCATAGATGAAAATATTCTTCAACGAGCCAAAAAGAGCGCACACCTTTAATCTGTACTGGCTACCGGGTGTGGCTTACCTTCTGGACGGCTTCGTGTTCTGCTCCAGCCCGCGGTCGGTGAGCGAGCGACGACTCATAGTTCCTCCGATTTTAGGACGATTTTCTTGCTGGTGGAAAGAAAACACTTTATACGGAAAGCCGAAGCAGAGACAATATTCACTTTTTAACCTGTAAAATCTCTTCCTAGAGCATTTAAAAGCAGACAATATGCCTATTCCATATGCAACTTATATACCCTCACCCATCCACCCACACCCTTGTTCTATACCTTGATTTGTTATGGACGTTGTTAAAAGTTTGTGTTGCTCCTGCGTTATTACCATCTTTAAATGAATCGCTTGCTGTATTACTCGATTGTCGCTTAGGccaaaaaaaacgtaaatacgTACACGTAAATATGGAATGTTTCATTCTAAAATATgcggtttaaaaaataaataacataaagcTTGTATATCTGTTGTTTACTTGTGTTGTTCACCACCATATTTTCTACACacgctcacacaaacacacacacacacacacacacacacacaaacacacacttacacactcttATTACCCCCATGGCATGGTGTATACAATGTGTATTAAATAAGGTATTTTTGCAATTAAGCATATACCAAAACAGCAGGaggaaagaagaaaataaaataaaactgaatataagAGCAGGGGATTAATTACTGGATGACAATGATTGCAAAATTCTAAAATTGTAACAGTATTGTAATTATACGACTATTATCTTCACAAGCATTATCATTGATACAGTATGTTTGACAGTAGCccactttttatttcataaagtGCATTTATTCTGAAACAACAacctatatattcaaattaacatgcaatttaatatataaaactatGAATTCCTATTGTAAAGCaatgtaaattatattttgatTTCAGTCACTATAATTGCCCTATTATATGACTTATAATCAAAATTGTAATGCAGTCCTAGTCATAGTTTATGAACAAAACTATGTAAGTGATTTGTGATATTGTGAGTAGATATTATGTGATTTGTGTTAGTTAATGCCTGAATTAATCTTAATTATCCCTAATATCAATGCCCCAACAACTATAGAAAGACAGATAAATACTGAGCAGGTTCATTTACCTTAAATACAACTGTTGCTTAGACttatgttgtttaaaataatgtttatgccTGAAAATGAGCGTCCAGATTAAAATCAATGTAATTCTGTAACagtttttcatttcattcattttccttcaggttagtccctttattcaccaggggtagccacagcggaatgaatcgccaacttatccagcatatgttttacacatcggatgcctttacagctgcaacccagtactgggaaacacccatacacactcattctctcacacacacattgactatggccaatttagtttattcagttcacctatagggcatgtctttggactgtgggtgaaacaagagcacccggaggaaacctacaccaacatggagagaacatgcaaactccatacagaaatcccttcttgctgtgaggtcacattGTTAACCACTAAGCCAACATTTCGccaatttgttaatttatttttttaatttgaaagaAAATTGATTCCTCTTAAacattaaatagaataaaaa
>TCONS_00006197
ATGTTCAACTCTGTCAATATAGGCAACTTCTGCTCCCAGTCTCGTAAAGAAAGGACTTCCGAGTTCGGTGAGCGGGCGAGCTGCGCCTCAAATCTGTACCTCCCCAGCACCTATTATGTCCCAGAATTTTCTACAGTCTCTTCGTTTTTACCACAGGCCCAGTCACGGCAAATAACTTATTCCTATTCCACTAACTTCACGCAAGTACCGCAAGTGAGGGATTTGCCATTCGAGTTGAATCCGTCGGGAAAGTGGCACCACAGGGGGAACTATTCATCTTGTTATGCGGAGGAGGACTTAGTGCACAGAGATTGCCTTCCGCCGTCAGCCACCATGACGGAAATGTTGATGAAAAACGAAAATGTCTACAATCACCACCACTACCACCCGGCTATTAACCATCCCGGCACTGGCTTTTACTCGAGCATCGGAAAGACCAACGTTCTTCCGCAGAGTTTTGATCGTTTTTTAGACTGTGCCCAGAGCGGAGCAGATGGTGGATCTGAAGGTAACTGTTTGCAGAAAGGCAGCTCTGGAAAGCCGGAGTCGGCGTCTCAAGTGTCTTCAGTTCTCCGCAGTACTGCAGATGGGGAGAAAGAGCTTGAGTGTGAGAAAAACACTACCTCGGGTTCTTTTGAAACCTCGTCGGGAACAAAAAACGACAACCAAACCAAATCCGGTCACTCTACTACTCCGCGAATGAGGAAGAAGCGATGTCCATACACCAAGTTTCAGATCCGAGAACTCGAGCGAGAATTCTTCTTTAACGTTTACATCAACAAGGAGAAACGGCTTCAGCTCTCCAGAATATTAAACCTTACTGACCGACAGGTCAAAATTTGGTTTCAGAACAGACGAATGAAGGAAAAGAAGTTAAGCCGAGATCGCCTACACTATTTCTCTGGAAACCCGCTGATGTGAACTGTGAACATTTCTCCGAGGGACAAGAAATGAAAATATTCTTCAACGAGCCAAAAAGAGCGCACACCTTTAATCTGTACTGGCTACCGGGTGTGGCTTACCTTCTGGACGGCTTCGTGTTCTGCTCCAGCCCGCGGTCGGTGAGCGAGCGACGACTCATAGTTCCTCCGATTTTAGGACGATTTTCTTGCTGGTGGAAAGAAAACACTTTATACGGAAAGCCGAAGCAGAGACAATATTCACTTTTTAACCTGTAAAATCTCTTCCTAGAGCATTTAAAAGCAGACAATATGCCTATTCCATATGCAACTTATATACCCTCACCCATCCACCCACACCCTTGTTCTATACCTTGATTTGTTATGGACGTTGTTAAAAGTTTGTGTTGCTCCTGCGTTATTACCATCTTTAAATGAATCGCTTGCTGTATTACTCGATTGTCGCTTAGGccaaaaaaaacgtaaatacgTACACGTAAATATGGAATGTTTCATTCTAAAATATgcggtttaaaaaataaataacataaagcTTGTATATCTGTTGTTTACTTGTGTTGTTCACCACCATATTTTCTACACacgctcacacaaacacacacacacacacacacacacacacaaacacacacttacacactcttATTACCCCCATGGCATGGTGTATACAATGTGTATTAAATAAGGTATTTTTGCAATTAAGCATATACCAAAACAGCAGGaggaaagaagaaaataaaataaaactgaatataagAGCAGGGGATTAATTACTGGATGACAATGATTGCAAAATTCTAAAATTGTAACAGTATTGTAATTATACGACTATTATCTTCACAAGCATTATCATTGATACAGTATGTTTGACAGTAGCccactttttatttcataaagtGCATTTATTCTGAAACAACAacctatatattcaaattaacatgcaatttaatatataaaactatGAATTCCTATTGTAAAGCaatgtaaattatattttgatTTCAGTCACTATAATTGCCCTATTATATGACTTATAATCAAAATTGTAATGCAGTCCTAGTCATAGTTTATGAACAAAACTATGTAAGTGATTTGTGATATTGTGAGTAGATATTATGTGATTTGTGTTAGTTAATGCCTGAATTAATCTTAATTATCCCTAATATCAATGCCCCAACAACTATAGAAAGACAGATAAATACTGAGCAGGTTCATTTACCTTAAATACAACTGTTGCTTAGACttatgttgtttaaaataatgtttatgccTGAAAATGAGCGTCCAGATTAAAATCAATGTAATTCTGTAACagtttttcatttcattcattttccttcaggttagtccctttattcaccaggggtagccacagcggaatgaatcgccaacttatccagcatatgttttacacatcggatgcctttacagctgcaacccagtactgggaaacacccatacacactcattctctcacacacacattgactatggccaatttagtttattcagttcacctatagggcatgtctttggactgtgggtgaaacaagagcacccggaggaaacctacaccaacatggagagaacatgcaaactccatacagaaatcccttcttgctgtgaggtcacattGTTAACCACTAAGCCAACATTTCGccaatttgttaatttatttttttaatttgaaagaAAATTGATTCCTCTTAAacattaaatagaataaaaa

Function

symbol description
hoxc11b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anatomical structure development and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in presumptive telencephalon; pronephric duct; pronephric mesoderm; pronephros; and tail bud. Orthologous to human HOXC11 (homeobox C11).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-000822-3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anatomical structure development and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in presumptive telencephalon; pronephric duct; pronephric mesoderm; pronephros; and tail bud. Orthologous to human HOXC11 (homeobox C11).

Ensembl:

ensembl_id ENSDARG00000102631

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006198 False 4372 mRNA 0.37 2 2180072 2185174
TCONS_00006197 True 2649 mRNA 0.40 3 2180072 2185174

Neighbor

gene id symbol gene type direction distance location
XLOC_003136 hoxc12b coding upstream 5039 2172335 ~ 2175033 (+)
XLOC_003135 hoxc13b coding upstream 17251 2156430 ~ 2162821 (+)
XLOC_003134 rargb coding upstream 83603 2089461 ~ 2096469 (+)
XLOC_003132 NA coding upstream 182662 1935684 ~ 1997410 (+)
XLOC_003133 NA coding upstream 227478 1951631 ~ 1952594 (+)
XLOC_003138 mir196c coding downstream 5447 2190621 ~ 2190730 (+)
XLOC_003139 NA coding downstream 13356 2198530 ~ 2205798 (+)
XLOC_003140 NA coding downstream 123035 2308209 ~ 2320355 (+)
XLOC_003141 igfbp6a coding downstream 206295 2391469 ~ 2397974 (+)
XLOC_003142 pip4k2cb coding downstream 213669 2398843 ~ 2413107 (+)
XLOC_003250 BX324177.11 misc downstream 9160629 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 9187712 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 9201188 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 9232859 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 9244219 11429393 ~ 11429689 (+)
XLOC_003126 AL935272.1 non-coding upstream 633841 1546117 ~ 1546231 (+)
XLOC_003118 FQ311892.1 non-coding upstream 1449149 730807 ~ 730923 (+)
XLOC_003112 NA non-coding upstream 1635878 543348 ~ 544194 (+)
XLOC_003149 FQ790208.1 non-coding downstream 429896 2615070 ~ 2616023 (+)
XLOC_003156 CT583672.1 non-coding downstream 642379 2827553 ~ 2828675 (+)

Expression


Co-expression Network