G1240589 (LOC106612240)


Basic Information

Item Value
gene id G1240589
gene name LOC106612240
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 34757819 ~ 34759021 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1415922
CTTTGACATGAAACGCAGGAGAATAATGATAAATGTAGCTGCGTCAACTCACGTCAGCCGCCTCATCGTTATGGTAGGTGTCTATAAAAAGGGCGAGGCCGTGGAACTTGGCATTGCTGCCAAACACAGACCCTGCAAAGGGAAGAATCACGTCAAGTCAACCAGCCAGATCGCTGCACTTACATCCATCCCATGGAGATCATTGCGGAAGGTATCCACAAATAAAGCCAGGCCAACAAAATGATCTTGGTTTCCAAAGACTGGGCCTGGATGAAGTCTCTCCTTCGTGTACCAGATGGCGATGCCGTCTCCATGGAGGTTTTTCTTCCCCGACCCGTGGATCTTGTACTGCACGTGCATCTCCCAGTCTTTCAGATGAACAGGCACTGTGTTCCATATGGATCCCTGTTTACTTCTCTCATCAGGTGTCAGGCGCACATACGAGCTGGTGACTAGCGTGCTCCCCCAGAAGTCCCACTGACTGGATGGGCTGCTTCCAACACCTGTACAACATTTTGGTGAAGAGTCAAGCAGGATTTTAGGGACACATGGGAGAAGAATGTGAAGAATTCCGTTGTTCATCAATTACTCATTGCCACCCCTAGCCCAGCTCTCGAGAAGCCATTATTGGGTTCTCAGTTGATGGTATGGAGAACAGCTGGCTCCATGTGAACTACAACCCCGACGCTCTGTTTTAACATTTAGAAACATTATTAATCCTCACTAGCAATATAGTTTTGGAAACCTTTGAAACTTAACTTTCATATAAACAAGAAAGAATCTTTCAAATACAAAATTACTGTGCGCAGTTTAGCAAAATACCATTCCCCTCACAAG

Function

NR:

description
vesicular integral-membrane protein VIP36-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1415922 True 837 lncRNA 0.46 3 34757819 34759021
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110489177 pp2aa coding downstream 130149 34622630 ~ 34627670 (-)
LOC110487787 sfxn1 coding downstream 138888 34586666 ~ 34618931 (-)
LOC118938726 NA coding downstream 314862 34441064 ~ 34443131 (-)
LOC110489166 LOC106604233 coding downstream 460149 34294193 ~ 34297670 (-)
LOC110489172 LOC106604229 coding downstream 465574 34288581 ~ 34292245 (-)
ccdc69 LOC106604205 coding upstream 124370 34883391 ~ 34904800 (-)
LOC118938728 NA coding upstream 138655 34897676 ~ 34900540 (-)
gm2a sap3 coding upstream 155039 34914060 ~ 34921098 (-)
LOC118938729 NA coding upstream 266153 35025174 ~ 35028163 (-)
LOC110489216 LOC106604190 coding upstream 283070 35042091 ~ 35082780 (-)
G1240585 NA non-coding downstream 7921 34748556 ~ 34749898 (-)
G1240584 NA non-coding downstream 11028 34746336 ~ 34746791 (-)
G1240544 NA non-coding downstream 55673 34657772 ~ 34702146 (-)
G1240562 tmed9 non-coding upstream 3509 34762530 ~ 34767864 (-)
G1240563 NA non-coding upstream 12637 34771658 ~ 34773212 (-)
G1240595 NA non-coding upstream 17301 34776322 ~ 34776908 (-)
G1240622 NA non-coding upstream 55539 34814560 ~ 34815916 (-)
G1240642 NA non-coding upstream 98715 34857736 ~ 34858195 (-)
G1240534 NA other downstream 113667 34643135 ~ 34644152 (-)
G1240533 NA other downstream 115782 34641492 ~ 34642037 (-)
G1240399 NA other downstream 414928 34337823 ~ 34342891 (-)
G1239090 ogt other downstream 2061417 32695876 ~ 32696402 (-)
G1240963 NA other upstream 302902 35061923 ~ 35062319 (-)
G1240953 NA other upstream 348807 35107828 ~ 35125496 (-)
G1241697 NA other upstream 758756 35517777 ~ 35519330 (-)
matr3l1.1 LOC106604139 other upstream 824290 35578460 ~ 35589383 (-)
G1242169 NA other upstream 1656957 36415978 ~ 36418075 (-)

Expression

G1240589(LOC106612240) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.8.
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G1240589(LOC106612240) Expression in each Bioproject

Bar chart with 17 bars.
G1240589(LOC106612240) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20.
End of interactive chart.

Co-expression Network