G1244755 (LOC106604128)


Basic Information

Item Value
gene id G1244755
gene name LOC106604128
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 38824503 ~ 38852543 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1420943
TGATACATCTCCACATGTCATAGATACTGTAGACGGTTTGGCTAAGCAGGTCCTGGGGCATGCTGGACATGAACCTCCCTACAGCTTTTAGATGTAATGGCTTGGCAATGGACTTCGTCGAATCAAATCAAGACAAAAAAAAGGCTAATGAGTGTTCACGGACCAGAATTGAAAAGTCCTGTTTGGATCCAGAGGGAGGAAATACACATTTATGGAACATAAATTGCAACCAAGTAAATGTTTTAGATTCAATTTTCCGTTGGAGATTTAATTCAGATTGTGACATAAATAAACATTTATTCAATATTCATAGTAAatttaccaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
>TU1420944
TGATACATCTCCACATGTCATAGATACTGTAGACGGTTTGGCTAAGCAGGTCCTGGGGCATGCTGGACATGAACCTCCCTACAGCTTTTAGATGTAATGGCTTGGCAATGGACTTCGTCGAATCAAATCAAGACAAAAAAAAGGCTAATGAGTGTTCACGGACCAGAATTGAAAAGTCCTGTTTGGATCCAGAGGGAGGAAATACACATTTATGGAACATAAATTGCAACCAAGTAAATGTTTTAGATTCAATTTTCCGTTGGAGATTTAATTCAGATTGTGACATAAATAAACATTTATTCAATATTCATAGTAAatttaccaaaaaaaaaaaaatgaacaaattGTGACCAAAAAAAGAAGCATTTAATTTAATAACCAACCCCTTTTTATATACTCGCTACTGTACCAACAAGTGTTTGTGATGGTGACAGACGGTGGCTACTGtgcatctttaaaaaaaacaacaacaaaacatttcatcaAAATCAAATGTCCCCCTTGGAAATGATACGGACCGTGTACCTGTAGCCTTACCGTCTCGTGGTAAAGAGGGATTCGTCTCCAGACACCTGAAGATgtcatcttcttcttctctctggtgCTGTGGAACATAGTGACTGATAGTAATGGGTTGACACATCTTGTCTACCAGGGTTTTTTTTCTTGTCTTCTTCCTGTGGAGACTGATTGCCCACAACTATCTGATATGAACAATCTTGCATTCATATAAAAATAAATGGTGACTATTcctactacatcatcatcatcagtctcTTCACTGTCCATTCCACCCACCAGTCATCAACTCTCCCACTCAATATACTAATCGCATTGATTTCTCAGAGCTAACGAGTAGAAAGTGTTTTGTTGTATAAACTGGGGGGCAAAAAACAAACCCTGTATTGTTTGGAATGGTCAACAGCCCATATGCTGCTCCAGGGGGAAATACATAGTTTATACTTCACACTCTTTGTAAGGCAGCTGTTGACACTTGCACTGCCCGTAGCCGTTGATGATAACCAGCGCTCCCTCCTCGTGGCTGGGCTCGTACTCGTTATAGGGTACCTGCGTGGCCAGGTCCGCCATTTGCTGCCGCTGCTGGGTCCTCATCTGGCGGCGGTTCTGCATGGCCGAGCACTGGCGTATCCTGCGCATGGTAGGAGGGCAGCACTTCCGCGAGATGAACACAACGAAAATGATGAGGAAGAAGGTAAACAGAAGGACCATCGTTCCGATGATCACCCTCTGGGTTAGGACCGTGTTGTCCGTCTCCGAGAAGTCCTCGGGGACTCCCCCTGCCGCTCCACTCCCGCCCTCCACCGTGGTTGCCAGGGCGGTGCGCGGCGCGGCGGTGGTTGTCGTTACGGTCGTAAAGCGCCCCAAATCCCCGTAGTAGCCCTGTGTGGGTGTCTGCTTCATTACTCCGAACAGAGAGCTGGTGACCTCCGCCGTCGTGCCTGTCGGCGAGTCCGTGACCATTGACATAGTGGTTGTGGTCAAGACGACAGGTGGCGGCATTGTAAAATTCAGACAAAGCTGGAATCCATAAACGGCGTCCAGTATCTCCTCGCCCTGGGCGTACTCGGGGGTGTGACACAGGATGGAGTGTTCCCACCTCCCCTTGAAGGTGCTAAGCCAAGTGGCCAGCGAGCAGATGCCTTTGGTACATTCCCAAAGGTTGCTGGACAGCCCCACGGTACCTAGAGACCGCCACATATCCAAGACCAGTGGGTCCAGGCTGCCTAACTTGTTGTTATCCAGTAGGAGGATCTTCAGGTTGGGCAGCGTCTCGAACACGTCCGGGGTCAGCACCCGGATCTCGTTCCCCGTGAGGTCCATCTTCTCCAGCGTGGTCCAGGTCCACTCCATACCGCAGGTCAGGTTGGAGATCTTGTTCCACTGCAGATAAAGGAACTGCAGAGCCACCAGACGGGGGAAATGAGCCAGATTGATCTTAGTCAGCTGGTTGTGTTCCAAGTGGAGTTCTCTGAGTTTAATGAGGCCAGCGAAGCCGTTCCGGGCCAGGCTTCGCAGCCGGTTGTTGGACAGACCCAGGTACTCAAGGCTACGGCAGTCCCAGAAGGCCCGGACGGGGGTGGTGCGCAGCGAATTGGAGCGCAGGTGGAGGATCTGCAGCTTGCGGAGACCATGGAACAGCTCAGGCTCCAGCACAGTCATCAGGTTGAAGGACAGATCTAAGATCTGTAGGTTGATGAGGTGGATGAAGGTTGTGTTTGGCAGCTTTGTGATCCGGTTGGAGCTCAGGTTGAGGTCTTTGAGTTTGTAGAGCCCCTGGAAGGCGTCCTCCTGCACCGTGGTGATCTGGTTGTGGTCCAGGTGGAGCCAGGTGAGCTGGGAGAAGCCATAGAACTGGTCCGGGCTCAGTTCAGCGACGCTGTTGTGGCGGAGCGATAACCCCAGGGCCCCCCTGTCAACGCCGTCCGGGGGCGCCTCCAGTCCTTGGGTGTCGCAGTAGAACTGCTGGTCTTCGCAACGGCATTTCTGGGGGCAGGTTGTGCATGACGCAGGAGACGGCAGGCACAGCAGCATGctgaacacacacaggcacaatgCCGTTGGTGCAGGTCCCACCAATGGCCACCTTGAATGGAAACCTGGGGGGTTTAAAGATAATAAAATCAACCAATGGGAGGGAAAGCTAATCTCTGCAGTACACATACTGCTGATCTGTGGTGGTAACACTTTTATTATCctcgctctcgcgctctctcgctctctctctctctgcgagtctctctctgtgagtctctctctctctctctgtctctctcgc

Function

NR:

description
leucine-rich repeat transmembrane neuronal protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1420943 False 352 lncRNA 0.34 2 38824503 38852543
TU1420944 True 2797 TUCP 0.51 3 38849646 38852543

Neighbor

gene id symbol gene type direction distance location
LOC118938733 NA coding downstream 75515 38747024 ~ 38748988 (-)
LOC110489484 LOC106604167 coding downstream 755144 38060365 ~ 38069359 (-)
LOC118938731 NA coding downstream 999500 37810669 ~ 37825003 (-)
rpb7 rpb7 coding downstream 1014003 37803588 ~ 37810500 (-)
LOC118938777 NA coding downstream 1024355 37800072 ~ 37800148 (-)
cdhr2 cdhr2 coding upstream 359689 39212232 ~ 39260855 (-)
LOC110489242 faf2 coding upstream 470053 39322596 ~ 39333207 (-)
LOC110489248 cltb coding upstream 490585 39343128 ~ 39374736 (-)
LOC110513519 unc5a coding upstream 610789 39463332 ~ 40061419 (-)
LOC118938766 NA coding upstream 1668201 40520744 ~ 40522860 (-)
G1244753 NA non-coding downstream 5001 38819078 ~ 38819502 (-)
G1244748 NA non-coding downstream 14547 38799632 ~ 38809956 (-)
G1244749 NA non-coding downstream 19814 38803737 ~ 38804689 (-)
G1244744 NA non-coding downstream 35927 38788188 ~ 38788576 (-)
G1244742 NA non-coding downstream 41108 38781600 ~ 38783395 (-)
G1244766 NA non-coding upstream 2691 38855234 ~ 38855598 (-)
G1244767 NA non-coding upstream 3177 38855720 ~ 38861881 (-)
G1244772 NA non-coding upstream 17982 38870525 ~ 38872171 (-)
G1244773 NA non-coding upstream 20510 38873053 ~ 38873669 (-)
G1244787 NA non-coding upstream 51365 38903908 ~ 38904441 (-)
G1244197 NA other downstream 323504 38500687 ~ 38500999 (-)
G1243718 NA other downstream 1051233 37772631 ~ 37773270 (-)
G1243234 NA other downstream 1378293 37445769 ~ 37446210 (-)
G1242169 NA other downstream 2406428 36415978 ~ 36418075 (-)
matr3l1.1 LOC106604139 other downstream 3235510 35578460 ~ 35589383 (-)
G1244972 rnf44 other upstream 433111 39285654 ~ 39298246 (-)
G1245005 NA other upstream 570316 39422859 ~ 39424565 (-)
G1246021 NA other upstream 1816032 40668575 ~ 40669571 (-)
G1246044 NA other upstream 1892982 40745525 ~ 40747578 (-)
LOC110489235 fam193b other upstream 2011265 40861900 ~ 40926734 (-)
LOC110489228 ef-1g coding downstream 1047189 37783302 ~ 37802457 (-)
G1244759 NA non-coding downstream 15250 38833881 ~ 38834396 (-)

Expression

G1244755(LOC106604128) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 200.
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G1244755(LOC106604128) Expression in each Bioproject

Bar chart with 18 bars.
G1244755(LOC106604128) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 3000.
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Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00011436 lrrtm2,LOC107750357 coding CM030133.1 CM030133.1 24202755 ~ 24204323 (-)