smpx (smpx)


Basic Information

Item Value
gene id smpx
gene name smpx
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 211098 ~ 247177 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562221.2
gaaagagagggagttaTTGTTGTCATTCTATAATCCCAGAGTTTCATTTTGGGGCGGAGCTTTGTGTCTGAGAGCCAACCACACAGAGCAGAATCAGGTCAGTCTGCTGGAGAGGACCTGAAAAAAACCAGGCACAGAGCACAGCAGGAGGATAGTTGACTGACTGAACAAGCAGCATGTCTAAACCATCGTCCAACGTCAAAGCCCTGCAGGCAAATCTAAATATTCCGATGGGAGCGCTGCGTCCAGGTGCGGGACATCCTgtcaagaggagagaggatactGTAGACACAgaggagGCTCCTCCCCCAGACCCCCTGCAGGAAGCCACGGCCCTGTCGCCAGAGGAGAAGAAACCATTGCCAGGATCGATGAAGCTTCCTGGTCCAGCAGTCAACCTATCAGAGCTGCAGAATGTCAAGAGTGAACTACGATGGGTCACCaaggactaacacacacactgCGGTGTTTCCCAACTTCTCCTCCAGTACTGAATTAGTTGTGCTTGTCCAGGGATACCATAAAATGTGTACTATTGGGGATACTCAAGGAGTACTACAGGTTTCTCATCAGACCCACACCCACCCTGCATCTTCTACTGATGAACTACAACTACCACACCCACCCTGCATCTTCTTCTGATGGACTACAACAACCACACCCACCCGGCATCTTCTACTGATGAAATATAAGATTGACCCTGCATCTTCTACTGATGAAATATAAGATTGCCCTGCATCTTCTACTGATGAACTACAAATACCAGACCCAACGTACATCATCAACTGATAGACGACAACTATACCAGACTACACCTAACCCTATCAGCTACGGACAGCTATACCAGACTACACCTAACCCTAtcagctacagacaactataCCAGACTTCACCTAACCCTAtcagctacagacaactataCCAGACTACACCTAACCCTATCAGCTACAGACAACTCCACCAGACGAGTGACCTGCAATAGGCCATCTACTTCAACAAACCCATAACTGGTTTAATTTCCCATGCagtgaagttagggttagggatagactGGATTGGAGTGAACTAAATGTAACAATAATACATCCAGCCCTGGTAGCTATAGGTCTCTGTGTTACCTCATATAGAAAAGACTACAACCAGACTAGTTATAGgttttgtttgtaaattcactctggagtgcaAGAGTGCAGAATTAGTCAATTCAGAGCGTTTCACTCTTGGACTAATCAGAGCTCACACTGGACACTGGCGGTTAATCAGAGCGTTCTGTCAAGCACCCAAGATAACTGGCTGAAGttgactagcttgctagctacttccagacacaaatgagacaacacctcactctgaccattcaccatagcagagctggttaggatgttttcatgttatccagagcattggtgactgtaatTGTGCTGCTGACAACAATATATTTACATTtctttgccaacgtttactgacaccgatCATATTCAATGGGTGCTCGTAAATTAATCAGTTATTTTGgactctggtacactcagacgatGAGTGCTCTGGAATAGGATTAGATAGTCAGAGTGAATTTACTAACGCACCAATAGACATAACATTACAGCTCTGTTACAGCTCTGCTACCTTTTACATCTTTAACTGTCAATGTGAACAAGACACAATCTGGAGAATGTATCTGATGGACTGATGTCATCAGAATGTGTATGGCGGGTTGTGATGTCATCAGAATGTGTATGGTGGGTTGTGATGACATCAGAATGTATTCGGTGGACTGTGATGACATCAGAATATTGTGATGTTTTAATTGTTTGAAATTCCCTTATAATCAAAATGGTTTCTAGGAGATTATGGATTCCTTAGCAACTGTTGCAATAAATTATATCTTGATTCTA
>TU1425494
agaaacagaaggagagggagaaagagagggagttaTTGTTGTCATTCTATAATCCCAGAGTTTCATTTTGGGGCGGAGCTTTGTGTCTGAGAGCCAACCACACAGAGCAGAATCAGGTCAGTCTGCTGGAGAGGACCTGAAAAAAACCAGGCACAGAGCACAGCAGGAGGATAGTTGACTGACTGAACAAGCAGCATGTCTAAACCATCGTCCAACGTCAAAGCCCTGCAGGCAAATCTAAATATTCCGATGGGAGCGCTGCGTCCAGGTGCGGGACATCCTgtcaagaggagagaggatactGTAGACACAgaggagGCTCCTCCCCCAGACCCCCTGCAGGAAGCCACGGCCCTGTCGCCAGAGGAGAAGAAACCATTGCCAGGATCGATGAAGCTTCCTGGTCCAGCAGTCAACCTATCAGAGCTGCAGAATGTCAAGAGTGAACTACGATGGGTCACCaaggactaacacacacactgCGGTGTTTCCCAACTTCTCCTCCAGTACTGAATTAGTTGTGCTTGTCCAGGGATACCATAAAATGTGTACTATTGGGGATACTCAAGGAGTACTACAGGTTTCTCATCAGACCCACACCCACCCTGCATCTTCTACTGATGAACTACAACTACCACACCCACCCTGCATCTTCTTCTGATGGACTACAACAACCACACCCACCCGGCATCTTCTACTGATGAAATATAAGATTGACCCTGCATCTTCTACTGATGAAATATAAGATTGCCCTGCATCTTCTACTGATGAACTACAAATACCAGACCCAACGTACATCATCAACTGATAGACGACAACTATACCAGACTACACCTAACCCTATCAGCTACGGACAGCTATACCAGACTACACCTAACCCTAtcagctacagacaactataCCAGACTTCACCTAACCCTAtcagctacagacaactataCCAGACTACACCTAACCCTATCAGCTACAGACAACTCCACCAGACGAGTGACCTGCAATAGGCCATCTACTTCAACAAACCCATAACTGGTTTAATTTCCCATGCagtgaagttagggttagggatagactGGATTGGAGTGAACTAAATGTAACAATAATACATCCAGCCCTGGTAGCTATAGGTCTCTGTGTTACCTCATATAGAAAAGACTACAACCAGACTAGTTATAGgttttgtttgtaaattcactctggagtgcaAGAGTGCAGAATTAGTCAATTCAGAGCGTTTCACTCTTGGACTAATCAGAGCTCACACTGGACACTGGCGGTTAATCAGAGCGTTCTGTCAAGCACCCAAGATAACTGGCTGAAGttgactagcttgctagctacttccagacacaaatgagacaacacctcactctgaccattcaccatagcagagctggttaggatgttttcatgttatccagagcattggtgactgtaatTGTGCTGCTGACAACAATATATTTACATTtctttgccaacgtttactgacaccgatCATATTCAATGGGTGCTCGTAAATTAATCAGTTATTTTGgactctggtacactcagacgatGAGTGCTCTGGAATAGGATTAGATAGTCAGAGTGAATTTACTAACGCACCAATAGACATAACATTACAGCTCTGTTACAGCTCTGCTACCTTTTACATCTTTAACTGTCAATGTGAACAAGACACAATCTGGAGAATGTATCTGATGGACTGATGTCATCAGAATGTGTATGGCGGGTTGTGATGTCATCAGAATGTGTATGGTGGGTTGTGATGACATCAGAATGTATTCGGTGGACTGTGATGACATCAGAATATTGTGATGTTTTAATTGTTTGAAATTCCC
>TU1425495
actgATATCAAAAGTTAGAGgttacaggaagagagagagagataaaggtcaACTAAAGGTAACTGGGATCAAACGTCAGAGAGGTTACTGTTACATCAACAGGATAGTTGACTGACTGAACAAGCAGCATGTCTAAACCATCGTCCAACGTCAAAGCCCTGCAGGCAAATCTAAATATTCCGATGGGAGCGCTGCGTCCAGGTGCGGGACATCCTgtcaagaggagagaggatactGTAGACACAgaggagGCTCCTCCCCCAGACCCCCTGCAGGAAGCCACGGCCCTGTCGCCAGAGGAGAAGAAACCATTGCCAGGATCGATGAAGCTTCCTGGTCCAGCAGTCAACCTATCAGAGCTGCAGAATGTCAAGAGTGAACTACGATGGGTCACCaaggactaacacacacactgCGGTGTTTCCCAACTTCTCCTCCAGTACTGAATTAGTTGTGCTTGTCCAGGGATACCATAAAATGTGTACTATTGGGGATACTCAAGGAGTACTACAGGTTTCTCATCAGACCCACACCCACCCTGCATCTTCTACTGATGAACTACAACTACCACACCCACCCTGCATCTTCTTCTGATGGACTACAACAACCACACCCACCCGGCATCTTCTACTGATGAAATATAAGATTGACCCTGCATCTTCTACTGATGAAATATAAGATTGCCCTGCATCTTCTACTGATGAACTACAAATACCAGACCCAACGTACATCATCAACTGATAGACGACAACTATACCAGACTACACCTAACCCTATCAGCTACGGACAGCTATACCAGACTACACCTAACCCTAtcagctacagacaactataCCAGACTTCACCTAACCCTAtcagctacagacaactataCCAGACTACACCTAACCCTATCAGCTACAGACAACTCCACCAGACGAGTGACCTGCAATAGGCCATCTACTTCAACAAACCCATAACTGGTTTAATTTCCCATGCagtgaagttagggttagggatagactGGATTGGAGTGAACTAAATGTAACAATAATACATCCAGCCCTGGTAGCTATAGGTCTCTGTGTTACCTCATATAGAAAAGACTACAACCAGACTAGTTATAGgttttgtttgtaaattcactctggagtgcaAGAGTGCAGAATTAGTCAATTCAGAGCGTTTCACTCTTGGACTAATCAGAGCTCACACTGGACACTGGCGGTTAATCAGAGCGTTCTGTCAAGCACCCAAGATAACTGGCTGAAGttgactagcttgctagctacttccagacacaaatgagacaacacctcactctgaccattcaccatagcagagctggttaggatgttttcatgttatccagagcattggtgactgtaatTGTGCTGCTGACAACAATATATTTACATTtctttgccaacgtttactgacaccgatCATATTCAATGGGTGCTCGTAAATTAATCAGTTATTTTGgactctggtacactcagacgatGAGTGCTCTGGAATAGGATTAGATAGTCAGAGTGAATTTACTAACGCACCAATAGACATAACATTACAGCTCTGTTACAGCTCTGCTACCTTTTACATCTTTAACTGTCAATGTGAACAAGACACAATCTGGAGAATGTATCTGATGGACTGATGTCATCAGAATGTGTATGGCGGGTTGTGATGTCATCAGAATGTGTATGGTGGGTTGTGATGACATCAGAATGTATTCGGTGGACTGTGATGACATCAGAATATTGTGATGTTTTAATTGTTTGAAATTCCC

Function

symbol description
smpx Predicted to be active in M band; costamere; and muscle tendon junction. Is expressed in several structures, including Kupffer's vesicle; electrically responsive cell; extraocular musculature; inner ear; and pericardial region. Human ortholog(s) of this gene implicated in X-linked deafness 4. Orthologous to human SMPX (small muscle protein X-linked).

NR:

description
small muscular protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562221.2 False 1892 mRNA 0.44 6 211098 247158
TU1425494 False 1838 TUCP 0.45 6 211171 247177
TU1425495 True 1771 TUCP 0.44 5 211171 245730
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Neighbor

gene id symbol gene type direction distance location
LOC118938957 NA coding downstream 137106 73839 ~ 73992 (-)
LOC118938949 NA coding downstream 178664 16053 ~ 32434 (-)
vipr1b vipr1 coding upstream 325640 572798 ~ 805393 (-)
sec22c sec22c coding upstream 579440 826598 ~ 843603 (-)
LOC118938951 NA coding upstream 583914 830248 ~ 832327 (-)
klhl40b LOC106590700 coding upstream 777416 1024574 ~ 1040867 (-)
hhatlb hhatl coding upstream 807805 1054963 ~ 1101022 (-)
G1248164 klhl34 non-coding downstream 29775 177823 ~ 181323 (-)
G1248162 NA non-coding downstream 50516 158136 ~ 160582 (-)
G1248161 NA non-coding downstream 53078 157616 ~ 158020 (-)
G1248158 NA non-coding downstream 59537 151031 ~ 151561 (-)
G1248155 NA non-coding downstream 67401 137229 ~ 143697 (-)
G1248256 NA non-coding upstream 22098 269256 ~ 269727 (-)
G1248264 NA non-coding upstream 27815 274973 ~ 275222 (-)
G1248674 NA non-coding upstream 55109 302267 ~ 305285 (-)
G1248676 NA non-coding upstream 60746 307904 ~ 315614 (-)
G1248682 mbtps2 non-coding upstream 74481 321639 ~ 330649 (-)
G1249325 NA other upstream 1156038 1403196 ~ 1405878 (-)
G1249326 LOC106581475 other upstream 1162031 1409189 ~ 1411097 (-)
G1249729 NA other upstream 1559826 1806984 ~ 1807621 (-)
G1250031 LOC107579696 other upstream 2100433 2347591 ~ 2348068 (-)
G1250592 NA other upstream 2739956 2987114 ~ 2987410 (-)

Expression

smpx(smpx) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 800.
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smpx(smpx) Expression in each Bioproject

Bar chart with 20 bars.
smpx(smpx) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1500.
End of interactive chart.

Co-expression Network