sec22c (sec22c)


Basic Information

Item Value
gene id sec22c
gene name sec22c
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 826598 ~ 843603 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945623.1
GAGATTTGTTTTCATCTTTACCCATAATGCTTAACAAAATATTAAGAAAGCTAGTGGGTCTTTCGAAGTATTGGACAACAGTCTACTTTAAATTACATGTACAGTAATTAGCAAAACACAACTAAAGTGTCTACTTTCATTCACATGTTGTATCACAACAATTTGAGATAAACAAAATGTACCGACGAATGTTAAGGCTATGTGAACCCAGTGGCCTGTGTGGACCATGTCTCTGATCCTGTTTGCCCTGGTGGTGCGGGTCAGGGATGGTctgcctctctcagcctccactGACTTCCAACACAACCCAGAGCTGCAGGAGAGGAAGCAGCAGCTACGGACCATCTCCAAGGCCCTCAGCCTGTTCCCTGACAGAGGGGTGGTCAAGGGCCATGACCTCAATATATATTTCCTCTCCAGTGAGGGCGTATCCTACATGAGCGTATGTGACGCCAGGCTCCCTGCAGCCATGGCCTTCTGTTTTCTAGAGGACCTGCGCTGGGAGTTCACAGCTCATATGGACAACGCCAAGGTTGCCCTGGCAGCCAGGCCGTACCCCTTTCTGGAGTTCGacAACAGCATAGCCTGGCTGCAGCAGCAGTATAACCAGGGGGGTGGTCCAGCGCTGGAGGTCACTCTGACCGAGGTACAGGAGGATCTGAAAACCCGCCCTTTGCAGATCCTCACTCTGGAGGAGGTGGAGTTTACCAACGGGTCAGCCAATGGCCACGCGGAACAACTTTCTGAATCCGGTCAGAACCAGAGGTTGGAGCCAGTGACCGCCCCAGGAATCCTCTCACTGGTCCTCAACATCATGTGTTCTTCTCTGAACCTCATCAGGGGAGTTCACCTCATAGAGtacaccttccagGATGATTATGAAGGAATCTGGAACGTGGTGGCGTTTCTGCTGGCGTTCCTGTGCTGTGTCGGTCAGTGTCACCTGTATCTGTTCCACTCTTCTCTGAAGAGGGTCAAGTCCCTGGCACTGCTGAGTGTGGTTGTGGTCTGTAACTGCTTCCTGTTTGGTCTGAGGAATGTCTGGCAGCTGCTGTTCCACCTGGCGGTGGCTGTCCTCATCACCCTCCTCACCCTCAACCGGAAACTACACGACAGAACCAATGACTGTGGGGTCTGAAGGATGGGGGACCATTTAGTGCGTAGCACCATCGCAGTAGGCTATGTACAGGCCGGTAGGGGAGGAAGAGGATCCAACCCAGACAGACGTCTCCTATCATGTCCAGTGGGATATAACATTGTTTTGTTTGTATAAGGATAATTTGTTGCTTTATTTCCATGTTTATTTGCACTGCGTTTACGTAGCGTCCCAGGCAGGTTTGAGGGGTAGTGGAGGCCCTaaccacggggggggggggtgttggatGGTCCTCAAATCGTCTTTTAGAAATGAATTCCAGATGAAGACaatagttttgaacaaattactTGAATGATATGAATTTGTAATACTGACTGTCTAATTAAAGGGCATCCGTGTGACATTAGACTATAGccagtcagacagtaggtctacatTGGACGAGGTAATTGAGATTACATCATCAGTGACGTAAAGAACACTCACTGTCCAATCAGACCACTGCTGTAGCTCAGTTAAGTGATAATCAACTACCAGTCTGATTCTCCAGGGTCTAAATGCAGCTAGTCTCACTAGAATAGGAAATGTACTGTgctttcaattcaatttgctttattgctTTCTTTTGCATTCTGTAGAATTGACGAATCAAAATGTCTCACCAAAGTATTTTCTGTTGTTTATGCAGAAAGCTTCCCAAGCAAGCAGGTGCTTGACATATCCCTCTAGTTTTACAACCACAACACCAGGTGTTATTCCTCTTCATGGTGGTCAGTATTGAGGAGTTAATACATATTTTTTAGATCATGGTTTTATACTTTACATGGCTAAGTAAGGTATTATATTATCAATATAATGTATCTAATTTGTTGTTCAAGAAGGCTGTTGGTAATAGTATGTTGCTTGGTAACAATGGTTGTAGTTTAATTTTTTTCTTCTTATATCTAAAACATGGAAATCATAAGTTTAAAATGAATACAGAAACGTTTTATATTGTGTAGTTAAAATAGATTTTGTAACACCGTaataatgtagtgacagtgtatGTTGCTTTTTGTAGTCCTAAAACGATCGATCGATTGATGCTTTTGGGGcttctgagtggcgcagcggtctaaggcactgcatctcaatgctagaggcgtcactacagaccctggtttgattccaggctgtatcacaaccggccgtgattgggagacccatagggcgtcgcacaattggcccagcgtcgtccgggtttggccggtggtaggctgtcattgtaaataagaatttgttcttaactgacttgcctagttaaataaaacaaatatatagaCGTGATTTGGGCTCCTTCCAGTCTGTGATATTTCTCATGTCTAGTCTAAGGGCCCTGTTCATGTTTTTACAGCTTGTATAGTAATCTGGTAAATAAGAAATATAATTAATTTCAGCAGAATTTGAGCTGAAAAGACATATTTGGAAGAAACTATTTACCGCTTTTTCTATGATTGAGAGACAGTTTGAATACAAATTGTGAATTGAAGATTCATACCCGCTCTACTGAAATGAACAAATCTTGgtgatgtgtaaatatttgtgttcCTCAAGAACCTGAGCACTGGTAATGGAATGTCCAATAGTTTTAGATCCAAGACCAGTGAGTTTGCACTACGGTTGGCTTGTTTAGTGTTAACTACTGAACTCATCTGGTTGAGGGAACAATGTGGGGGTTGCaggaagaccccccccccccccctaggttAAGCTGCTGTAACTGATAGACCAATatgttgaatacattttttttgtataatTGAGTTTTGTTCTGTGTAATGATGGCTGCTTTAATGTCAAGGAGTCCTTTACAGTTTCCTTAAATTGTCAATTGAAGTGGGGGAGAGAGCGTGTTAACGTTTCAGTCTACAAGGGGTAACATTCAGGCCCTCCTTTTCAAAGTGTTGGGTGTGTCTTTCATAACCAAAATTGATTAGAGATACCTGTATTAACACATGGTTTACCTATTGTGTGGTTTGTATTTTCTAAAGTAAAATAAACCACTGTCTGAAAGGTGCAGTAATCTGAATCAAA

Function

symbol description
sec22c Predicted to act upstream of or within endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Orthologous to human SEC22C (SEC22 homolog C, vesicle trafficking protein).

NR:

description
PREDICTED: vesicle-trafficking protein SEC22c

GO: NA

KEGG:

id description
K08520 SEC22A_C; SEC22 vesicle trafficking protein A/C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945623.1 True 3172 mRNA 0.44 6 826598 843603
Loading

Neighbor

gene id symbol gene type direction distance location
vipr1b vipr1 coding downstream 21205 572798 ~ 805393 (-)
smpx smpx coding downstream 579440 211098 ~ 247177 (-)
LOC118938957 NA coding downstream 752606 73839 ~ 73992 (-)
LOC118938949 NA coding downstream 794164 16053 ~ 32434 (-)
klhl40b LOC106590700 coding upstream 180971 1024574 ~ 1040867 (-)
hhatlb hhatl coding upstream 211360 1054963 ~ 1101022 (-)
LOC118938952 NA coding upstream 217735 1061338 ~ 1062552 (-)
LOC110489513 NA coding upstream 384237 1227840 ~ 1288739 (-)
LOC110489519 LOC106590690 coding upstream 588758 1432361 ~ 1472553 (-)
G1248939 NA non-coding downstream 30785 795499 ~ 795813 (-)
G1248937 NA non-coding downstream 32942 793392 ~ 793656 (-)
G1248934 NA non-coding downstream 40540 785854 ~ 786058 (-)
G1248918 NA non-coding downstream 89101 737213 ~ 737497 (-)
G1248912 NA non-coding downstream 103603 722772 ~ 722995 (-)
G1248973 NA non-coding upstream 27176 870779 ~ 890373 (-)
G1249001 NA non-coding upstream 62198 905801 ~ 907707 (-)
G1248959 NA non-coding upstream 64391 907994 ~ 912450 (-)
G1249013 NA non-coding upstream 81717 925320 ~ 925998 (-)
G1249030 NA non-coding upstream 170208 1013811 ~ 1019927 (-)
G1249325 NA other upstream 559593 1403196 ~ 1405878 (-)
G1249326 LOC106581475 other upstream 565586 1409189 ~ 1411097 (-)
G1249729 NA other upstream 963381 1806984 ~ 1807621 (-)
G1250031 LOC107579696 other upstream 1503988 2347591 ~ 2348068 (-)
G1250592 NA other upstream 2143511 2987114 ~ 2987410 (-)

Expression

sec22c(sec22c) Expression in all Baseline Samples

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sec22c(sec22c) Expression in each Bioproject

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sec22c(sec22c) Expression in each Sample
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Co-expression Network