LOC110512106 (LOC106590676)


Basic Information

Item Value
gene id LOC110512106
gene name LOC106590676
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 4032228 ~ 4101181 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945664.1
TTATAACTTTTGAGAGGTGTGGTCTGAGTTGAGGATACATGTACTGAATGGTTTTGGAGGCTTTGGAGTTCAAGATTCCTTCCTGCCGAGTGAAGTCAAAAAGATCCAGCTCAAAACGACTTTGTGAAGTGTGCAGCTATTTCTTCAATTCACACGGGACTTTATTTTGCGACAACCGTGCAGAATCAATCGCATTTGTGAAGCAGAACTGCGTAGCGGGAGGAAATGTCTTTTTCCTGGTCGTTAAACTTCAGCTGACGAGAGGCTGCGTCCGACTGTCACTTGAACAGCGTTTATTCCAGCTATTTCAGCGTCATTTGAAATTGATCAAAGgcacctctccctctacaccaggaatctctccctctacaccaggAATCTCTCCCTCTACTGCAGGAAGCTCTCCCTCTACACCAGGAcacaaaggagaggagggattCCATCGTTCATCCATCTTACCCAAGGCTCCACAGTTGAAAAGGTCATCagtctgtccatccatctattCATCGATCCATTaatccattcatccctccctccatcggtCATGATATCCTGGGACTGGCTAAGGGGAGCGTCCATGCTACTGGCGTTCCACGCCTCCGTCTCCACGGTGTTGATTGGGAACGGTAACCGCGGTAACGGTACGGCCCTTGGCTGGGATGGTATTCTGGagaagtactttgttgaagaggGGGACTGGTGGCAGGCCAAGCAGAGAGGGAAGAGGGCCATCACAGAGGCAGACATGAGCGCCATACTAGATCTGCACAACAAGCTAAGAGGACAGGTCCACCCACCTGCTGCTAACATGGAACACATGgagtGGGATACAGAGTTAGAGCGTACGGCGGAGGAGTGGGCTGAGACTTGTCTTTGGGAACACGGTCCGGCTGGTCTGCTCCCCCAGATAGGACAGAACCTGGGAGCGCACTGGGGATGGCCACGCCCCCCTACTTCCCATGTGCAGGCCTGGTATGATGAGGTGAAGGACTATTCCTTCCCTTACCCCCAGGAATGTGACCCCTACTGCCCCTTTAGATGTTCCGGCCCCGTCTGCACCCACTACACACAGttggtgTGGGCCACCAGCAGCAGGATAGGCTGTGCCATCAACATTTGCTACAACATGAACGTGTGGGGTCAGAACTTGGCTAAAGCTGTTTATCTGGTCTGCAACTACTCACCCAAGGGGAACTGGTGGGGTCATGCACCCTATAAACACGGCACCCCCTGCTCTGCCTGCCCCCCCAGCTATGGAGGACGATGCAAGGACAACCTCTGctgcaaagacaaaGTTACAGAGTCGCAGAGATCTCGGGAGGAAACCGAGGAAAACAATTACATCGAACCAGAGGCCCCCAGGAGCCCCCAGAAGCCACGCCCAAGGGCCCCCCAGCCAAAGTCCCCCCCTATGGCCAAGACCCCcgcccccccctccacccccccgcCAGAGGAGCGGGAGAGGAATGCGGTGGTCAATACACAGCAGATGTCTCAGCTTGTGACCTGTGACACTAAGCTACGAGATCAGTGCAAAGGGACCACATGCAACAGGTACGAGTGTCCTGCCGGCTGTCTAAAGTCCACAGGGAAGGTGGTTGGGACAGTACACTATGAGATGCAATCCAGTATCTGCCGAGCTGGCCTCCACTCTGGAGTGGTAGATAAGGATGGAGGATGGCTGGACGTCACCAGACAAGGCAGGAAGGACTTCTTCATCAAGTCCAACAAGAATGGAATTCAGTCTCTCGGgaAGTATCAGAGTGCCAACTCTTTTATCATCTCCAAAGTAGCAGTGAAAGCTATCACCTGTGAGACCACGGTGGCTCAGATGTGTTCATATCAAAAGCTTGTAAAGCACTGCCCAAGGTTATATTGCCCCCGGAACTGCATGGAGGAGAACCCTAACATATCACGGGTCATCGGAACCGGAATCTATTCAGATaaatCCAGTATATGCCGTGTGGCGGTTCACGCAGGGGTGCTTCAGAACAATGTGGGTGGCTACATCGACGTGATGCCGGTAGACAAGCGGAAACAGTACATTGCCTCGTACCAAAACGGCATTAATTCCGAGAGTCTTCAGAACCCACCAGGAGGAAAGGCATTCCGGGTGTTTGCTGTGATCTGAATGTTCCGTGTTCTGACCGGGTGTTCCATGTTCTGGCTGAGTGTTCCATGTTCTGACTGAGTCTTCCGACTGAGTGTTCCGTGTTCTGACTGAGTGTTCCGTGTTCTGACTGAGTGTTCTGTGTTCTGACTGAGTGTTCTGTGTTCTGACTGATTGTTCCGTGTTCTGACTGAGTGTTCTGTGTTCTGACTGATTGTTCCATGTTCTGACGGAGTCTGAATGAGTGTTCCAAATTCTGGCTGATTGTTCCGACTGAGTGTTCCGTGTTCTGACTGAGTGTTACGTGTTCCGAAGGTCAGgggctccatctctcctctctcaccaaaCACAGAATCAATCATCTCTGCTGTCCGTTTGGCTGAATGGGCCGTGAacactcatctctgctgtcaaaAGCTGAAAATGACTGAAACGTTTTTCTGGCCTTTTCACTAGCCGCAACGTCAGAGGACGTCTCCACGGAAACTATAGACATTTATCACAGGTACGGGCAGCGCTGAatgaagagagatgggagagagcaaGGCTGGTGCTCAGTGCAGTCCCGTTTCAATGTTTTAATGTCATCTGGTTCATTTTATAAACTGTATATATTTGACGTAATTGCTAGAATTACTTTAAACTGTAaagtgcagtaccagtcaaaagtctggacacacctactcattccagggtatttctttatttgtactgttttctacattgtagaataatagtgaagacatcaaaactatgacataacacat
>XM_036945665.1
TTATAACTTTTGAGAGGTGTGGTCTGAGTTGAGGATACATGTACTGAATGGTTTTGGAGGCTTTGGAGTTCAAGATTCCTTCCTGCCGAGTGAAGTCAAAAAGATCCAGCTCAAAACGACTTTGTGAAGTGTGCAGCTATTTCTTCAATTCACACGGGACTTTATTTTGCGACAACCGTGCAGAATCAATCGCATTTGTGAAGCAGAACTGCGTAGCGGGAGGAAATGTCTTTTTCCTGGTCGTTAAACTTCAGCTGACGAGAGGCTGCGTCCGACTGTCACTTGAACAGCGTTTATTCCAGCTATTTCAGCGTCATTTGAAATTGATCAAAGgaatctctccctctacaccaggAATCTCTCCCTCTACTGCAGGAAGCTCTCCCTCTACACCAGGAcacaaaggagaggagggattCCATCGTTCATCCATCTTACCCAAGGCTCCACAGTTGAAAAGGTCATCagtctgtccatccatctattCATCGATCCATTaatccattcatccctccctccatcggtCATGATATCCTGGGACTGGCTAAGGGGAGCGTCCATGCTACTGGCGTTCCACGCCTCCGTCTCCACGGTGTTGATTGGGAACGGTAACCGCGGTAACGGTACGGCCCTTGGCTGGGATGGTATTCTGGagaagtactttgttgaagaggGGGACTGGTGGCAGGCCAAGCAGAGAGGGAAGAGGGCCATCACAGAGGCAGACATGAGCGCCATACTAGATCTGCACAACAAGCTAAGAGGACAGGTCCACCCACCTGCTGCTAACATGGAACACATGgagtGGGATACAGAGTTAGAGCGTACGGCGGAGGAGTGGGCTGAGACTTGTCTTTGGGAACACGGTCCGGCTGGTCTGCTCCCCCAGATAGGACAGAACCTGGGAGCGCACTGGGGATGGCCACGCCCCCCTACTTCCCATGTGCAGGCCTGGTATGATGAGGTGAAGGACTATTCCTTCCCTTACCCCCAGGAATGTGACCCCTACTGCCCCTTTAGATGTTCCGGCCCCGTCTGCACCCACTACACACAGttggtgTGGGCCACCAGCAGCAGGATAGGCTGTGCCATCAACATTTGCTACAACATGAACGTGTGGGGTCAGAACTTGGCTAAAGCTGTTTATCTGGTCTGCAACTACTCACCCAAGGGGAACTGGTGGGGTCATGCACCCTATAAACACGGCACCCCCTGCTCTGCCTGCCCCCCCAGCTATGGAGGACGATGCAAGGACAACCTCTGctgcaaagacaaaGTTACAGAGTCGCAGAGATCTCGGGAGGAAACCGAGGAAAACAATTACATCGAACCAGAGGCCCCCAGGAGCCCCCAGAAGCCACGCCCAAGGGCCCCCCAGCCAAAGTCCCCCCCTATGGCCAAGACCCCcgcccccccctccacccccccgcCAGAGGAGCGGGAGAGGAATGCGGTGGTCAATACACAGCAGATGTCTCAGCTTGTGACCTGTGACACTAAGCTACGAGATCAGTGCAAAGGGACCACATGCAACAGGTACGAGTGTCCTGCCGGCTGTCTAAAGTCCACAGGGAAGGTGGTTGGGACAGTACACTATGAGATGCAATCCAGTATCTGCCGAGCTGGCCTCCACTCTGGAGTGGTAGATAAGGATGGAGGATGGCTGGACGTCACCAGACAAGGCAGGAAGGACTTCTTCATCAAGTCCAACAAGAATGGAATTCAGTCTCTCGGgaAGTATCAGAGTGCCAACTCTTTTATCATCTCCAAAGTAGCAGTGAAAGCTATCACCTGTGAGACCACGGTGGCTCAGATGTGTTCATATCAAAAGCTTGTAAAGCACTGCCCAAGGTTATATTGCCCCCGGAACTGCATGGAGGAGAACCCTAACATATCACGGGTCATCGGAACCGGAATCTATTCAGATaaatCCAGTATATGCCGTGTGGCGGTTCACGCAGGGGTGCTTCAGAACAATGTGGGTGGCTACATCGACGTGATGCCGGTAGACAAGCGGAAACAGTACATTGCCTCGTACCAAAACGGCATTAATTCCGAGAGTCTTCAGAACCCACCAGGAGGAAAGGCATTCCGGGTGTTTGCTGTGATCTGAATGTTCCGTGTTCTGACCGGGTGTTCCATGTTCTGGCTGAGTGTTCCATGTTCTGACTGAGTCTTCCGACTGAGTGTTCCGTGTTCTGACTGAGTGTTCCGTGTTCTGACTGAGTGTTCTGTGTTCTGACTGAGTGTTCTGTGTTCTGACTGATTGTTCCGTGTTCTGACTGAGTGTTCTGTGTTCTGACTGATTGTTCCATGTTCTGACGGAGTCTGAATGAGTGTTCCAAATTCTGGCTGATTGTTCCGACTGAGTGTTCCGTGTTCTGACTGAGTGTTACGTGTTCCGAAGGTCAGgggctccatctctcctctctcaccaaaCACAGAATCAATCATCTCTGCTGTCCGTTTGGCTGAATGGGCCGTGAacactcatctctgctgtcaaaAGCTGAAAATGACTGAAACGTTTTTCTGGCCTTTTCACTAGCCGCAACGTCAGAGGACGTCTCCACGGAAACTATAGACATTTATCACAGGTACGGGCAGCGCTGAatgaagagagatgggagagagcaaGGCTGGTGCTCAGTGCAGTCCCGTTTCAATGTTTTAATGTCATCTGGTTCATTTTATAAACTGTATATATTTGACGTAATTGCTAGAATTACTTTAAACTGTAaagtgcagtaccagtcaaaagtctggacacacctactcattccagggtatttctttatttgtactgttttctacattgtagaataatagtgaagacatcaaaactatgacataacacat

Function

NR:

description
PREDICTED: cysteine-rich secretory protein LCCL domain-containing 1-like

GO:

id name namespace
GO:0005576 extracellular region cellular_component

KEGG:

id description
K24243 CRISPLD; cysteine-rich secretory protein LCCL domain-containing

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945664.1 False 2880 mRNA 0.51 15 4032228 4101181
XM_036945665.1 True 2859 mRNA 0.50 15 4032228 4101181
Loading

Neighbor

gene id symbol gene type direction distance location
dipk2ab LOC106590677 coding downstream 55716 3870649 ~ 3976512 (-)
zic1 LOC100136467 coding downstream 1571247 2455923 ~ 2460981 (-)
LOC110490877 LOC106579762 coding downstream 1964004 2063991 ~ 2068224 (-)
cpb1 cbpb1 coding downstream 1978718 2030601 ~ 2053510 (-)
LOC110489515 glyg coding downstream 2137081 1858530 ~ 1895147 (-)
LOC110490880 LOC106590674 coding upstream 53071 4154252 ~ 4167691 (-)
LOC118938936 NA coding upstream 467348 4568529 ~ 4570176 (-)
LOC110490881 LOC106590669 coding upstream 640499 4741680 ~ 4769343 (-)
LOC110490882 LOC107696012 coding upstream 792902 4894083 ~ 5003661 (-)
LOC110490885 LOC106590660 coding upstream 1759524 5860705 ~ 5867522 (-)
G1251388 NA non-coding downstream 5121 4026808 ~ 4027107 (-)
G1251370 NA non-coding downstream 63536 3968251 ~ 3968692 (-)
G1251367 NA non-coding downstream 66778 3965175 ~ 3965450 (-)
G1251361 NA non-coding downstream 72345 3959327 ~ 3959883 (-)
G1251344 NA non-coding downstream 112148 3917683 ~ 3920080 (-)
G1251427 NA non-coding upstream 11609 4112790 ~ 4113000 (-)
G1251429 NA non-coding upstream 12609 4113790 ~ 4114146 (-)
G1251431 NA non-coding upstream 31357 4132538 ~ 4141494 (-)
G1251438 NA non-coding upstream 47177 4148358 ~ 4148679 (-)
G1250592 NA other downstream 1044818 2987114 ~ 2987410 (-)
G1250031 LOC107579696 other downstream 1684160 2347591 ~ 2348068 (-)
G1249729 NA other downstream 2224607 1806984 ~ 1807621 (-)
G1249326 LOC106581475 other downstream 2621285 1409189 ~ 1411097 (-)
G1251965 rpl7 other upstream 681459 4782640 ~ 4788427 (-)
G1252027 NA other upstream 738203 4839384 ~ 4839879 (-)
G1253229 NA other upstream 2305890 6407071 ~ 6407289 (-)
G1253278 NA other upstream 2361021 6462202 ~ 6462560 (-)

Expression

LOC110512106(LOC106590676) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
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LOC110512106(LOC106590676) Expression in each Bioproject

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LOC110512106(LOC106590676) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
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Co-expression Network