LOC110490881 (LOC106590669)


Basic Information

Item Value
gene id LOC110490881
gene name LOC106590669
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 4741680 ~ 4769343 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945671.1
GCTGTTCTGTTATGAGAGCACTGCAGGACTGTCACTGCAACGGACGGAAGGGCGCAACACAGTGGCAGTGTCTACACGCAACTCCGTACTTACTTATTTCTATGCGCACTTGCGACAACTGGGACTGTTTGCGAGAATCGGGAAGCAACTTGACAAAATCAGcaacaagtttaaaaaaaatcatttgtTGAGCCTAGCATTCATTGATTCAGTCAATTTCTGCATTCTTTTGCTGTCTTGGAGTAGagtaatttatttttaaaaaataaggaaatcagtctagTAGACCTCTATTCTATTCAGACCGTTTGTTTCATAAACAACACGAACAATATTAGTTTACTTATTTATCACAACTTTGGCTGCAATAACTAATTTAAACCACAGTAAAGCACAACGGTGTGCGCTTTCTATACAATATTATCTCGGTTCTCTCATTATCTTGCTCATTGCCATCGCGTTCAAGATGATGAACACTATGGTCATTTTTGCGGAATTTTTCGTGGTCATCTTGAAAGTGCTCTGGGCTTTTGTTACCGCCGGGGCGAAATGGGTGGTGCGGCCGAAGGAGAAGAGTGTAGcgggacaggtgtgtgtgatcACCGGGGCTGGAAGCGGTCTGGGTCGGCTGTTCGCCAAGGAGTTCGCTAGAAGACGGGCTGTACTGGTGCTATGGGACATCAACAGCAAAAGCAACGAGGAGACCGCGGAGTTGGTGAGGGAAATCTACCGGGAGCTGGACAGTGAATCTCCGATGGCCAAAGAAGgaGCAATAGGAGGGCTAGAGGAGGTGCTTCCGTTCAAGCCTCAGGTGTACACGTACGTTTGTGACGTGGGCAAGCGGGAGAGTGTGTACTCCACGGCGGAGAAGGTGCGTCGGGAGGTGGGCAACGTGGACATGTTGATAAACAACGCTGGCGTGGTCTCTGGTCACCATCTCCTGGAGTGTCCTGACGAGCTGATCGAACGCACCATGGTGGTCAACTGCCACGCACACTTCTGGACCACCAAGGCATTCCTTCCCAAGATGTTGGAGCTGAACCACGGCCACATTGTGACGGTTGCCAGCTCTCTGGGGCTATTCAGCACAGCTGGTGTGGAGGATTACTGCGCCAGTAAGTTCGGGGCCATCGGCTTCCACGAGTCGCTGAGCCACGAGATCAAGGCTTCGGATAAGGACGGCATTAAGATGACCCTGGTGTGTCCCTACCTGGTGGACACGGGCATGTTCAAAGGCTGCAGGATAAGGAAAGAAATCGAGCCATTCCTGCCTCCCCTGAAGCCAGAGTTCTGTGTAACACAGTCTATGAGGGCCATTCTCACCGATCAGGCTATGATCTGCACCCCACGCATAGTGTATATGGTTAACTTCATGAAAAGctTCCTGCCCTTCGAGGCCATCGTTTGTATGTACAGGTTCCTCGGTGCTGATAAGTGTATGTACCCCTTCCTTGCCCAGAGGAAGGAGCTGATGAACAACAACGAGGCTAAGGGGGACGTCTAGGGGGCGCTGTTGCCGCATGGTGGGGTGGGGCCCATAACCCTAGAGGCACAAGGATAAGACCACTGAGggtgcatggaggaggaggaggaggaggaggatttaaAAAGACTGAATCTAGACTGGTGAACTTGCATTGAGCAGATACAAAGGTCCTCTGAAACGATACCAGCTGTGTACTAAACAAAGGATTTTATTTCtcttagtttttttttttcatattgtctttttatttttttaatgtttttcttCTTCTAAGGTTTGTTTAAAGAAACCAACCATCTATATACTGTGTcaatagttgtttttttttttgttttttttttaaatcatatgaaAAAAAGGTATTAACTATTTACGTAATGTAGTCACCAACTCTCTATTTAGTATCTTTGtggaaatatacagtatgttactgtacaGTCAAATCTTATCACTTTCACTTTCTCTTTTATTTGTAGACATGCACTGTAATATTAATTAATAATTCTCTACACGGCCAAGTCTCTGTTAGAAACGGTTCAAAATAGGCATTTTATCACCAGGACCGACATGCAAAATAAATTTAAACACGTAcgtgttattcaatcattgccgCAACACAGCTCACGTTTCTCGGCGAGCGTCTGGGTAGCCAGGTGCTGAAATTAGaactgcaagtcccgcctctcccatctcctcattggttgttaggagcatatacccacatgggtgattgaaagatgaactgaggtgcacacactccagtccagttggtggtggtaatgcaccttaaagttggttgccatcCGCCCATGTAAACTCCacagaagaagaagcctgaaggaggagagattactagaaacaaacccttttatctgtggattcatTGTAGGAGTAGAAGGACCTTGttgcatttcaggtaaaacaacaacccaatgtttatatccctggacaaattagctagcaacagaaaGCGAGCTAGCTAAATTGACATAAATGTTTAATGATTTTGACCTGTccacaaattaatatagttggttcagagtttgttttgatattttcacTGGTCAGGTGTGGGTGGACAAAGTCAGCATGCACGCAAGCAGTCTGGTCAACATGTTAGGGTTGCATATTTCTGGTAATTTTCAGAAAATTCTGGTTAAAAGATTCCCAGAAtcaagatggggggggggggggggggggggggagacaggaaATCCTGTCCCCTCCAACCAGAATTTCTGGACAACCTGGGGATTTTGGGGAAACACTACCCAGCAACCCCTGCGGCTCAGTCTAACCAATCATGCCATGATGCTCCAAATGGTTATTCAATCATGCTGTAGCGATCAGAGCTTGCGTTTATGTATTTTAATTCCTTCTGATCATATGAAGATCTTCCGATTTATTCCATCTATTTCAAACAGTTCATATTAGTTGTACCTACCGGCCATTGATTTGGGTAAATCTATCAGCCAAATGTCTCGTTAATTTAATGTGACTTGGCTTTCAGCAGTCGACTTACGATCTTTATCACACTTCTGACTTATTGATGGCCGTATCAATCACCACATCGTAAGGCGTACAACGCCGTTCAAAAGGGTTAACTTAGAAAGGTCCTTGTTTTCCataaaaacatacatgaaatgagttgcaaaaaaATTAAATAGGAAAAATAGTCAAAATGTtaacaaggttataaataatgtattttttccttgaaataataattgtgtcctctTTGACAAACTTTGCTTTTGTCAGAAGAATCATCCGTTTGCAGCAATTATAGCCTCGCAGACTTTTGGCACTCTAGTTttttgaggtaatctgaagagatttcaccccatgcttcctgaagcaagttggattggcttgatgggcacttcttacgtaccatacggtcaagctgctcccacaacagctcaatagggttgagatccagtgactgtgctggccactccattagaGACAGCTGGTAttctgactgcttcttccctaaatagttattgcatagtttggcgctgtgctttgggtcattgtcctgttgtagaaGGGAATTGGCTCCatttaagcgccgtccacagggtatggcgttgcaaaatggagtgatatccttccttcttcaagatcttCTTTACTCTggacaaatctcccactttaccgcCACCAAAGCACCCcgagaccatcacattgcctccaccatgcttgacagatggcgtcaagcactcctccagcatcttttcattttttctccATCTCATAAATGTTCTTCTTTATGAagcgaacacctcaaacttagactCGTCTGTCCATAACATAACTTAGACTTTTCTCCCCAATCTTTCTCTGCccaatgtctgtgttctttttcccatcttaatattttatttttattggccagtctgagatatggctttttctttgcaactctgcctagaaggccagcatcccagagtcgcctcttcactgtcgcGGTGCAGTGTTTTGTGGgtaatatttaatgaagctgccagttgaggacttgtgaggcgtctgtttctcaaactagacactctaatgtacttgtcctcttgctcagttgtgcaccggggcctcccactcctctttctattctggttagagacagttctgtgaagggagtagtacacagtgttgtacgagatcttcagtttcttggcaatttctcacatggaatagccttcatttcacagaacaagaatagacaaaaaaattcagaagaaagttatttgtttctggccattttgagcctgtaatcgaacccacaaatgctgatgctccagatactcaactaatctaGGTATTTCTAATgtatttctaatgatcaattatccttttaaaatgataaacttggtttagctaacacaatgtgccattggaacataggagtgatggttgctgataatgggcctctgtacgcctatgtagatattccattaaaaatcagcagtttccagctacaatagtcatttacaacattaacaatgtctacactgtatttcttatcaatttgatgatattttaatggacGAAAAAAAgtgtttctttcaaaaacaaggacatttctcagtgacctcaaacctttgaacggtagaaTGAAACCAATGAACAGCCCTTTTATCTATCAGTGTGTGACGTGTGTGAGGAGGAACTATGTCTGGTCTGTTTTCACGTCTTAGCTCAGTACGTTcagtagtgtctctctctctctctctctctgtctctctctgtctctctctctgtctctctctgtctctctctctgtctctctctctgtctctctctctgtctctctctctgtctctctctctgtctctctctctgtctctctctctgtctctctctctgtctctctctgtctctctctctgtctctctctctctctctctctctctctctccaatgtcCTCCACCATTTGCATAAAGTGACAGTGAAAATGAAAACATTGGTTGATCTGTTTTGCGAATAGAGTACCACGTTGCCCTTCGTGGAAAACGTTGACTGCCGCCAGGTTTGCAAATTTCTGGTAACTTTCCCTAAAATCCCAAGAGTTTCAAGAAATTCTGGTTTTTAAAAGATTTTCGGATTTAAAAAGACGGTAAACCAGAATCGTCCAACTTGTTTTGCTGCTTGTATATTTGATAAACTTTAGGCGGGAGGAGCAGGACTGCAGAGTTTTATGACTCGTTGAAATACATTCCAATAGGCGTCAGTCCTCCAGTGATGAGCCTAAATTCTCTACCTCTTCATTTGCCATTCATTGACGGTATGACACAAGCCTCATTTTGTAATTCTTTCTTAAAAAActgctcttttttttttaagcagATTGTGGTtctgatgtttttttttgttgttgttgtcttttaACTAACTTAAAAATGAATAAAGTGATTTTAGATTATTTGATTATTA

Function

NR:

description
PREDICTED: retinol dehydrogenase 10-A-like

GO: NA

KEGG:

id description
K11151 RDH10; retinol dehydrogenase 10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945671.1 True 5420 mRNA 0.43 6 4741680 4769343
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118938936 NA coding downstream 171504 4568529 ~ 4570176 (-)
LOC110490880 LOC106590674 coding downstream 573989 4154252 ~ 4167691 (-)
LOC110512106 LOC106590676 coding downstream 640499 4032228 ~ 4101181 (-)
dipk2ab LOC106590677 coding downstream 765168 3870649 ~ 3976512 (-)
zic1 LOC100136467 coding downstream 2280699 2455923 ~ 2460981 (-)
LOC110490882 LOC107696012 coding upstream 124740 4894083 ~ 5003661 (-)
LOC110490885 LOC106590660 coding upstream 1091362 5860705 ~ 5867522 (-)
LOC110489534 NA coding upstream 1424214 6193557 ~ 6194985 (-)
LOC110490887 LOC106590652 coding upstream 2018381 6787724 ~ 6813310 (-)
LOC110490888 NA coding upstream 2183625 6952968 ~ 6956509 (-)
G1251970 NA non-coding downstream 14691 4699193 ~ 4726989 (-)
G1251973 NA non-coding downstream 29215 4710630 ~ 4712465 (-)
G1251944 NA non-coding downstream 116047 4625304 ~ 4625633 (-)
G1251938 NA non-coding downstream 124049 4616866 ~ 4617631 (-)
G1251899 NA non-coding downstream 221519 4515613 ~ 4520161 (-)
G1251965 rpl7 non-coding upstream 13791 4782640 ~ 4788427 (-)
G1251991 NA non-coding upstream 57365 4826708 ~ 4827294 (-)
G1252024 NA non-coding upstream 58862 4828205 ~ 4829569 (-)
G1252025 NA non-coding upstream 61661 4831004 ~ 4838497 (-)
G1252033 NA non-coding upstream 83179 4852522 ~ 4852745 (-)
G1250592 NA other downstream 1754270 2987114 ~ 2987410 (-)
G1250031 LOC107579696 other downstream 2393612 2347591 ~ 2348068 (-)
G1249729 NA other downstream 2934059 1806984 ~ 1807621 (-)
G1249326 LOC106581475 other downstream 3330737 1409189 ~ 1411097 (-)
G1252027 NA other upstream 70041 4839384 ~ 4839879 (-)
G1253229 NA other upstream 1637728 6407071 ~ 6407289 (-)
G1253278 NA other upstream 1692859 6462202 ~ 6462560 (-)

Expression

LOC110490881(LOC106590669) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 6.
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LOC110490881(LOC106590669) Expression in each Bioproject

Bar chart with 21 bars.
LOC110490881(LOC106590669) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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Co-expression Network