LOC110489556 (LOC106590625)


Basic Information

Item Value
gene id LOC110489556
gene name LOC106590625
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 8669081 ~ 8672326 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562282.2
TTCCAGTCGACCGCAGTAGAACGTACATGACCATTGATCACAATGTTGTTGTAAATGTCATGCAGTCGACATGTAGTCGCAAATCGGACAAGTTGTATACACTTTCAAAGGCGGTGACAGACATTGGTAAAGGTGATACGCTCGAACGCACCCATTGTTTTCAAATGTAGGCGTCTCCAGAGCGGTGCGTTGGTGACAGACGTGCGAAAGAGCCAAGGGCGCGACTCGCTAACCCAAATATCCTATCACGCTCCAATGGCGTCTGGGGGAGGGAGGGTCTTTCTTTCTGTAGTCTCTGATTGAATCAGTCCAGTTTCAATTAGTTACATATACAAACTACGGCACATCAGGAAGAAAGAAAATATATTTGGACGATTAGACTGCCCCTCTGGATATACTAGGGGACGTTTGGTAAAAGGAAACAAGAAGAAGCCGGAGAACGTAATTACTAACGTAGGCTAGTACTTGTGTGCTGTTGTTCAGTGGACCTACAGGCTCCATCCATACTGTGGCGAATCCGTTTTTAACTGCGCATAGATGCCTACGCTGAATGTTGTCAAGGAGGGCATACATTGTTTGAATGAAGGGATACTATTTTTGTTTTGATGGCAGGCCAACCGCAATAAGCACTGTAATACCCGCAATGGAAACATGTTCATGGCATCGTTCTTTCATGTGAAGAGCCTTGCGCACTGCAGTAAAAGCAGGGCTGTGTTATCTTATTTTGGATTGCGATTTGGATTGGGATATCGAATATGTGTTACCTaacccactggacacacactagttgaatcaacgttgtttccatgtaatttcaatgaaattacgttgaaccaatgtgtAATACACGTTGAATTAACGTCTATGCCCAGTGAAAACGATTTAACATTCGATTCGAGTACCAATTCCCACCAGAGATATTCAATAACCATATATCTTTGCCTATTGTAAATGTAATAAGTTTTCGCCCAGTGGTCAGAGCCACTCACTCCTAGGTTACAGATGAGAGGGAAACAATACCATCGACAACTGAAGTTGACAGCGCCTTGGGAGAATGATGCTGGCTACGGGAGAAAGCTCAGAACGCACAGGAACCATACAAAGATAATAGCTCAGCCCGGAATCGTGATGAAGGTGCTTCGCAGAAAGCGGATTGTGTTGTTTATAGCCTATTTCTTGCTGCTAGTGCTGACCATGCTGAACTTGGCCAATTACAAATGGACTAAAGTGCCCCAGCAGTGCAATCACCAGATGAGGAGTGCTTCCTATCAAGGCAGATCAGACATCCGGTTCCTCTACAGACCCTATCTGGCTAAGAAGAGACAGTTGGTCTATGTTCTGACCACATGGAGGTCTGGGTCCTCCTTTTTCGGGGAGCTGTTTAACCAACATCCTGAAGTGTTCTTCCTCTATGAACCTATGTGGCACATTTGGCAGAAGCTGTACCCGGGAGACGCTGTGTctttgcaaggagcagccagggaCATGCTCAGCTCTTTATACCGCTGTGATCTCTCTGTGTTCCAGCTGTACAACAGCCCAGGTGGAAAGAACTTTACCTCCCTAGGACTCTTTGGGGCCTCCCTGAATAAGGTGGTGTGCTCCTACCCTCTGTGCTCCGCCTACAGGAAAGAGGTGGTGGGGATGGTGGATGACAAGGTGTGTAAAAAGTGCCCACCTCAAAGCCTTAGACTACTGGAGGAGGAGTGCCTCAAGTACAGCACGATCGTTATTAAAGGGGTACGTATCCTGGACGTTAACGTTCTAGCCCCCCTCATGGAGGACCCGTCGCTGGACGTGAAGGTAGTTCACCTGGTCAGGGACCCCCGGGCCGTGGCCAACTCCAGGATCAAGTCCCGACACGGGCTGATCCGGGAGAACCTGCAGGTGGTCCGGAGCAGGGACCCTAAGCTTCGCAGGATGCCCTTCGTCGACCCCAACCACAAAGCCAACAAGAAGGACGGCTCGGACTACCACTCCATCGGAGCCATGGAGGTGATCTGTGACCGCACCTCGCGGACCCTGAGGACGGCCTTAAACCCTCCCAGTTGGCTCAAAGGGAAGTACATGGCCGTGCGCTACGAGGACCTGGTGGAGAACCCTGTGAAGATCCTGAGGAACATCTACCGCTTCACCAACCTCACCACCAACCACGACATTGAGTCGTTTGCTCTGAATATGACCAGCGGGTCTAGTTCGTCCTCCAAGCCGTTCATAGTGTCCTCCAGGAACGCCACTCAGGCTGCCAGCGCATGGAGAACAGTGCTCAGCATCCAGCAGATCAAACAGGTGGAGGACTACTGTCATCACTCCATGGTTGTCCTGGGTTACGACAGAGTCAGGACGGCCGGGGAGGCCAAGGACCTCAGGAAGTCTTTACTGACTGTCTCCAAACTGTGACAGAAAAACACCttattttttttccttctccCTTTTCCACCAAAAGACTGTGAATTTAATGTACACTTTGCATCTAGTGCCGTTCAGTTAATCGTGGAAAATACAACGCTTTGAATCAGTGTTTTTTTGAGGAAATCTACTTTTATGGGCACATTGGAATGTATCTCGTTTGTATTTTTCAGTTAAGTTGCAGACAGTTGTACATGACGGGACCACTACTTGTCAGTTTGGACAACTGGATGTTATTGACAAATCAAGAAGAACTATAAACAATGACTTGAATTATTGAAACTACAACTACGGAAACAAACAGTGTATGATTCATATATATTTCCAACATTTTATTTTGAATGTTTCTTTAACCTGAGAGAATACTTGGCTTTCCAGTATCCATACTGTCTGTAAAAGTGAGAGAagaaatggcaaaaaaaaaagaagcattaatacataaaaaaaaaaaatgaattgtttGAGCAGGTTATGTTACTTTGTGATTAATGGATGGACTCAGAGACAATCATTAAACTGGTCTGTTATAGCTATAATGTTGCTCTAAGGAAGGTTTCAGGTTTATTAGTTATAACAGCGGGACATCCCAGATGAAGATTGATGTTGACACACTGGTAGTAAATCGTGTGGACTCGGCAGTCGTGGAAGGATTTCTCATCCGTGTCACTGAAAGTGTAGCCTGGggtcatttttacatttttttttacaggacTAGATCTCTTTGATGCAAATAGGTGATTTAGCCAAACtgctttgaaaaaaaaaaacgtctgTTGCAGAAGCAGAGTTGCTCTAGCATCCCCTTtgaacaaaataaaaacatttcggCATGTCTTG

Function

NR:

description
carbohydrate sulfotransferase 2-like

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0000139 Golgi membrane cellular_component
GO:0008146 sulfotransferase activity molecular_function

KEGG:

id description
K04745 CHST2; carbohydrate 6-sulfotransferase 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562282.2 True 3246 mRNA 0.46 1 8669081 8672326
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110489555 LOC106590626 coding upstream 19337 8630353 ~ 8649744 (+)
LOC110489552 LOC106590631 coding upstream 216023 8441659 ~ 8453058 (+)
LOC110490897 LOC106590637 coding upstream 574662 7899106 ~ 8094419 (+)
LOC110490896 NA coding upstream 803003 7863667 ~ 7866078 (+)
LOC110489541 arhgap29 coding upstream 1529518 7110207 ~ 7139563 (+)
LOC110490900 dok6 coding downstream 151190 8823516 ~ 8956345 (+)
LOC110489557 LOC106590621 coding downstream 378218 9050544 ~ 9061028 (+)
LOC110489564 neto1 coding downstream 943686 9616012 ~ 9791573 (+)
LOC118938963 NA coding downstream 1000089 9672415 ~ 9672471 (+)
LOC110490903 timm21 coding downstream 1116430 9788756 ~ 9796316 (+)
G1255126 NA non-coding upstream 25022 8643289 ~ 8644059 (+)
G1255109 LOC106590627 non-coding upstream 60464 8603390 ~ 8608617 (+)
G1255111 LOC106578468 non-coding upstream 66996 8598335 ~ 8602085 (+)
G1255103 NA non-coding upstream 81318 8587454 ~ 8587763 (+)
G1255090 NA non-coding upstream 120204 8548242 ~ 8548877 (+)
G1255142 NA non-coding downstream 9338 8681664 ~ 8724694 (+)
G1255151 NA non-coding downstream 31858 8704184 ~ 8705302 (+)
G1255428 NA non-coding downstream 62805 8735131 ~ 8735386 (+)
G1255429 NA non-coding downstream 63278 8735604 ~ 8735818 (+)
G1255435 NA non-coding downstream 73731 8746057 ~ 8746479 (+)
G1253720 LOC106590648 other upstream 1580046 7086331 ~ 7089035 (+)
alg14 alg14 other upstream 1667668 6997759 ~ 7002064 (+)
G1253703 LOC106590651 other upstream 1700665 6964482 ~ 6968416 (+)
LOC110490886 LOC106590655 other upstream 2341007 6242892 ~ 6328082 (+)
G1255589 NA other downstream 346919 9019245 ~ 9019731 (+)
G1257500 NA other downstream 2462518 11134844 ~ 11135414 (+)
G1257551 NA other downstream 2579601 11251927 ~ 11269539 (+)
LOC110489585 dap1 other downstream 2769022 11441274 ~ 11461528 (+)

Expression

LOC110489556(LOC106590625) Expression in all Baseline Samples

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LOC110489556(LOC106590625) Expression in each Bioproject

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LOC110489556(LOC106590625) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 75.
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Co-expression Network