LOC110489570 (LOC106590600)


Basic Information

Item Value
gene id LOC110489570
gene name LOC106590600
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 10256343 ~ 10296042 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036943685.1
AGGTTACGCTTTGAGTCTGGGTAAATCCTGCTTCTTGCGCTCAACCATCCAGAGGAGGCCAGCCGTATGAACAGCATGCTGCCTCTGAAGAGCCCTGTCTCACCCCTGGGCTACAGCACAGACTATCTGAAGTTTAGTAGTGACTACAGACATGGGGAGGTGGGAGGGGCCAGCAGCGCCAGAGGGATGCGCTCAGCCTCAGAGCTCCGTGATTTGATGGACACCTTACAACGCAAGAAGATCGCCCTGGAGACAAGCCTGCGAGCCAATGGGGACGCTAGCCCCTCGTACTTCAGTATGACACAGtctccacCCACCACGTCTGTGACCTCACCCACCTCGATGTGGTCAGCCTATCAGGAACAGGCTAGGCGCTTCTACGGCTCTGATCGTCCTCCTCTCTCTGGCAAAGCTGCCGCCCCTCGCTCCCCCTCTCGGCGCTCTGACCCCCCTTCCTCCCGAACCTCCATGACCCGGAAACAATCATACCAATCACAGGACAGCCTGCTCATCTCAACTGGCAATGGGCGACGCCCACTAAACCCAAACTCCTCCCCCCTGTTGTCGATGCAGAACTGTGGAGGTTCTTCTAACTCAGTGGCCGGTGGTgataacctctcctctcctccaccctcatcCCTCTTTCCAACTAGTGGAGCAGCCAGCATGCCCTCGAGTCCCCGCCTGGGACTACGAAGCCACGGCAACCATGAGCCGGTGCCTAGCAACCGAACCAGGAAGTACTCTGCAGGGTCTATAGGCGGCATAATGGAAAGTCACAGCTGCTCACTGCCCCGCCTCTGCCCCTCATCATCACCTCGTTCCCATGACAACGGAGCCCTGGCCCTGTTTTCCCTCCCCCTGACCTCTAATCCTCTACGCAACTCCTCTCACAACAATAGCCAAAACCACACCACAAACAACAACTACAACCATAACCAAATGACTAACTTCACCTACAGCCATGCCCAAAACATGAACCGGAACCAAGGAGAGGGGGTggaatccatctctctctccatccctgaaTCTCCCACCCAGGCCCCTCCAGACGTGACCTCACCGTCCCTATCAGGGGGCTCTTCCAGCCCCGGTGTGGCCAAGATACTCAGCTTCACCTCCACCAGCTCCACTTCCAGCCTTCAGGAGCCAAAGAGGTCAGCCAGCCGAGGAGCCTCCCCTGGACCAGAGCTCTTTCTGGGGGAGAGGCGGAGAGAGCACAGGGGGGGAAGACTGGAGCCTGGGCTAGGATTAGAGGAACGAAGGCAGTCATTTGGAAAGGGAGGGGTGGGGCTGGGGGCGGGGTTGACCCCACCAGGGGGGTTCAGGGTGAGGAGTGGCAGTATCAGCTCCCTGAGTGGGAAGGAAGAACTGACTGACTACCACCATCGCCAGAGAGACGAGAGACTACGAGAACAGGAAGTGGAGAGACtgGAACTCCAACGGCTGGAGACCatcctgtctttgtgttcagAGCTGGGGCGATCGGAGCAGGACAGGGAGAAGAGTGTTGGTTCTAGTCCGAGTACCGGTGCCGGTCTAGCCGATCTCCAAAAGATCAACCGGGAACTAGAGAAGCTCCAGGTCTCTGACGACAAAGAGCCAGTATCCGTCTTCTTCGACTTAACCGTTAACGGAAATGGTACCGCCTCAGAAAACAATTATTATGGTAATGACAAGGAGCGTCAGTTTGGACAGCGATGGAGCAGAGATCCCCGTGACAACAGGGCGGAATCACCCGTCGTCACTCTACGAAGCTCTGCCTCCTCGCCCACCCCGCATCTACCGAGGACCAATCAGGCGCTGGTGGAGGAGGGACGGCGGAGGAAGGAAGTGACccgtgtggaggaggagaggatccaGGTGCTCAACAACATGGACAAGCTGGAACAGAAGATCAAAGAACTGGACAACCAGATGGACGAATCACTCAGAGAAgtggagatggagggtgcCCTGGTGCAGGCTGAGCAGGATGCAGAGCTATCAGCTCTGCAGCAAGAGAGAGATGCTGTGGAGACACTCGACACCAAGATGGCCGACATGGAACAGGCACCGGACCAGAAGCCTCAGgactcTGAGGTGCTGGAGGCTGAGACGAAGCGTTTTAAGGACCTGGAGGAccagcagatggagagagagagtcatcataatgaggaggaggagacaagCACACAACACCTTCTCAGAGAGATCGTTGACTATCAAGTCAGCACCGTCACACGCAAGGGGAGGCTGGTGACCCTGAAGAAGCAGGCGGACCTGATTACCCAGCAGGCTCAGCGAGAGAAGGATAGCTTTCTGAAGGAGAGGACCAACCTGCAGATGATGCTGCAGAGGgagAAAGAGAACCATGCCTCTCTGGAGAGGAAGTATGCTGACCTCACAGGTGGGCGGCACTTCCCTCTCAGTCCTATCAGTCTCAAGGAGCACTTCCGTTcgctggaggagaggaagaggttaGTGAAAGAAGGCGGGGCCCACCCGAGTGACACGTTACCCAGGAAGAAGACCACTGTCACCCCTCAGTTCAGCTGTGTTACACTGGGACACAGCATGCTTAACAAgTCCCAGCAGCCCCCGGTGCAGAGTTGTAGCTGTGTCAGTATTCTACCAAGGGCCATGTCGGTCTCCAGCAATACAGATACACACCGTCTGCACAaggGTCAGGCCACCCGGTCCAACATGTACCTGGACAGTGGCAACGGCCAGGCCTACGACACCTTGAGCATGGACAGCTTGGACTCCATGGACACCAGCATCTCTGTCTGCTCACCTGACAACGTATCCTGtgccAGCACGTCTAATGTAACCAGACTGGAGGAGATGGAGCATCTACTGAGACAGGCCCAGGAAGAGAAGAACCGCCTCATAGAACACAagGAGCAAGAGATGGAGTCGCGCAAACAGgctctggaggaggagaggaggagggagcatCTGGAGAAACGACTGCAGGAGGAGACCAACAGACGACAGAAACTCGTCGACAGGGAGGTGAAACTACGGGAGAAACAGAGAGCACagTCCCGTCCTCTGACGCGTTACCTGCCGGTGCGTAAAGATGATTTTGACCTGAGGGCCCATATAGAGTCAGCAGGCCACAGCGCTGACACGTGTTTCCACCTGTCCCTCACGGAGAAGATTTGTCGAGGATTCCTGGTCAAGATGGGGAGAAAGATCAAGACCTGGAAGAAACACTGGTTCGTCTTCGACCGCAACCGGCGAACGCTCTCCTATTTCTCAGACAAGCACGAGGCCAAGCTGAAAGGGGTCATCTATTTTCAAGCCATAGAAGAAGTTTACTACGACCACTTAAAGAAGGCACACAAGagtcctAACCCGTGTCTGACGTTCAGTGTGAAGACTCATGACAGGATCTACTACATGCTGGCCCCCTCTCCTGAGGCCATGAGGATCTGGATAGACGTTATCGTCACCGGGGCCGAGGGATACACTCAGTTCATGGTGTAGAAGGTGTGATGTGGCCAGGGTGGAGGGATACACTCAGTTCATGGTGTAGAAGGTGTGATGTGGCCAGGGTGGAGGGATACACTGAGTTCATGGTGTAGAAGGTGTGATGTGGCCAGGGTGGAGGGATACACTCAGTTCATGGTGTAGAAGGTGTGATGTGGCCAGGGTGGAGGGATACACTCAGTTCATGGTGTAGAAGGTGTGATGTGGCCAGGGTGGAGGAATACACTCAGTTCATGGTGTAGAAGGTGTGATGTGGCCAGGGTGGAGGGATACACTCAGTTCATGGTGTAGAAGGTGTGATGTGGCCAGGGTGGAGGGATACATTCAGTTCATGGTGTAGAAATGGGTTTCTCAAACTCTGTCCTCGGGACAGCAaagggtgcacgttttgttttttgccctcgtacacagctgattcaaataataaacAAATCATTAagctttgaatcagctgtgcagtgttagggggggggggggaataacatGCACCCCTTGTGGTccggaccgagtttgggaaacgctggtgtAGAAGGTGTGATGCGGCCAGGGCGGAGGGACACGGAGGGACACACTCCGTTAATGGTGTAGAAGATGTGATGCGGCCAGGGCGGAGGGACACACTCCGTTCCGTTAATGGTGTAGAAGGTGTGATGCTGCCAGGGCGGAGGGACACACTCCGTTAATGATGTAGAAGGTGTGATGCGACCAATGAGAAGGGACACATCCAGTTGACGCTGTAAGAGTGGTGCTTCGGCCAGAGTGGAAGGATACGACCAGCGTGCGGTTCCGGGGCCAGGACTAgatcctctcttttctctgtgaCTCAAATGGACGTTTGTtcttatttctgtatttttttattatttttttttaattcaaagGAAGAATTCTCCAACAGCTGCATTAACTCTCGCCGGTAACTCTACTGGGATTGGCCAGTGTTTTTTACGCATCATTATGTTGAAAAAGTGATTGGTTGTTGATTAACTAGGAATGTACATAgcaaccacaggaggttggtgacatattatgagccgtcctcaccCCAGCAGTCTTCACTGATAGCAACATGATGTGCTGTAGTAAACAAGCAAAACAGAACAGTCATTAAACTTCCTGGTTGTATAGGGATCAAGTTACTGATATTTACTCAACCCTTATGTCCTCTGGCTACACTGGAGGACACAACAGAGGTCAAATCATCTTTGCATGGAGTGTCTGGCTAGCCAGGGGTTGATGGGGTATTGGGCATTAACCTTTCTGGGATataagccagggaaaatgcagagcgccaaattcaaataaattacaatAAAAATCAAACTCATTAAATCAcccatgcaagatagcaaattaaagctacacttgttgtgaatccagccaacatgtcagatttcaaaaaggcttttcggcgaaagcaaacgatgctattatctgaggataatagcacctccgtaaacaaagggAGAAACCATATTTCAAAAATATAatacatgccttacctttgacgagcttcttttgttggcactccaatatgtcccataaaaatcacaaatggtccttttgttcgattaattctgtcgatatatatccgaaatgtccatttatttggcgcgtttgatccagaaaaacaccggttccaacttgcgcaacgtgactacaaaatatctcaaaagttacctgtaaactttgccaaaacatttcaaaatacttTTTTAATACAACTATAGGtatttttttaagtaaataatt
>TU1435807
AGGAGGCCAGCCGTATGAACAGCATGCTGCCTCTGAAGAGCCCTGTCTCACCCCTGGGCTACAGCACAGACTATCTGAAGTTTAGTAGTGACTACAGACATGGGGAGGTGGGAGGGGCCAGCAGCGCCAGAGGGATGCGCTCAGCCTCAGAGCTCCGTGATTTGATGGACACCTTACAACGCAAGAAGATCGCCCTGGAGACAAGCCTGCGAGCCAATGGGGACGCTAGCCCCTCGTACTTCAGTATGACACAGtctccacCCACCACGTCTGTGACCTCACCCACCTCGATGTGGTCAGCCTATCAGGAACAGGCTAGGCGCTTCTACGGCTCTGATCGTCCTCCTCTCTCTGGCAAAGCTGCCGCCCCTCGCTCCCCCTCTCGGCGCTCTGACCCCCCTTCCTCCCGAACCTCCATGACCCGGAAACAATCATACCAATCACAGGACAGCCTGCTCATCTCAACTGGCAATGGGCGACGCCCACTAAACCCAAACTCCTCCCCCCTGTTGTCGATGCAGAACTGTGGAGGTTCTTCTAACTCAGTGGCCGGTGGTgataacctctcctctcctccaccctcatcCCTCTTTCCAACTAGTGGAGCAGCCAGCATGCCCTCGAGTCCCCGCCTGGGACTACGAAGCCACGGCAACCATGAGCCGGTGCCTAGCAACCGAACCAGGAAGTACTCTGCAGGGTCTATAGGCGGCATAATGGAAAGTCACAGCTGCTCACTGCCCCGCCTCTGCCCCTCATCATCACCTCGTTCCCATGACAACGGAGCCCTGGCCCTGTTTTCCCTCCCCCTGACCTCTAATCCTCTACGCAACTCCTCTCACAACAATAGCCAAAACCACACCACAAACAACAACTACAACCATAACCAAATGACTAACTTCACCTACAGCCATGCCCAAAACATGAACCGGAACCAAGGAGAGGGGGTggaatccatctctctctccatccctgaaTCTCCCACCCAGGCCCCTCCA

Function

NR:

description
pleckstrin homology-like domain family B member 2, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036943685.1 False 5229 mRNA 0.52 17 10256343 10296042
TU1435807 True 998 TUCP 0.57 3 10287673 10295990

Neighbor

gene id symbol gene type direction distance location
LOC110489568 LOC106590608 coding downstream 9783 10220497 ~ 10246560 (-)
LOC110489563 cbln2b coding downstream 834320 9418351 ~ 9422023 (-)
LOC110514162 LOC106590620 coding downstream 1292130 8963472 ~ 8964213 (-)
LOC110489554 LOC106590627 coding downstream 1630149 8597494 ~ 8626194 (-)
LOC110489553 arhg4 coding downstream 1720303 8458800 ~ 8536040 (-)
LOC110490904 LOC106590606 coding upstream 40975 10337017 ~ 10368733 (-)
LOC118938784 NA coding upstream 140451 10436449 ~ 10437044 (-)
trnac-gca-10 NA coding upstream 142353 10438395 ~ 10438466 (-)
LOC110489574 hgd coding upstream 149524 10445566 ~ 10459083 (-)
LOC110490822 NA coding upstream 298507 10594549 ~ 10600184 (-)
G1256921 NA non-coding downstream 30040 10225799 ~ 10226303 (-)
G1256893 NA non-coding downstream 39647 10215646 ~ 10216696 (-)
G1256905 NA non-coding downstream 63504 10192013 ~ 10192839 (-)
G1256899 NA non-coding downstream 72062 10184036 ~ 10184281 (-)
G1256898 NA non-coding downstream 72804 10183331 ~ 10183539 (-)
G1256941 NA non-coding upstream 9916 10305958 ~ 10306219 (-)
G1256942 NA non-coding upstream 10850 10306892 ~ 10307229 (-)
G1256951 NA non-coding upstream 37279 10333321 ~ 10333604 (-)
G1256952 NA non-coding upstream 37673 10333715 ~ 10334086 (-)
G1256969 NA non-coding upstream 80889 10376931 ~ 10377209 (-)
G1256654 NA other downstream 381601 9873519 ~ 9874742 (-)
G1256146 NA other downstream 777525 9477813 ~ 9478818 (-)
G1255735 NA other downstream 1232340 9023584 ~ 9024003 (-)
G1254214 NA other downstream 2929887 7325712 ~ 7326456 (-)
G1253278 NA other downstream 3793783 6462202 ~ 6462560 (-)
G1257642 NA other upstream 522401 10818443 ~ 10818911 (-)
LOC110489593 LOC106590549 other upstream 2214830 12507315 ~ 12533443 (-)
LOC110489604 mllt10 other upstream 3046011 13288725 ~ 13369504 (-)
G1260199 NA other upstream 3090347 13386389 ~ 13387587 (-)
G1260226 LOC106590529 other upstream 3166823 13462865 ~ 13505161 (-)
G1256938 NA non-coding downstream 791 10286651 ~ 10286882 (-)
G1256889 NA non-coding downstream 5243 10219778 ~ 10282430 (-)
G1256928 NA non-coding downstream 19766 10266873 ~ 10267907 (-)
G1256929 NA non-coding downstream 20848 10265741 ~ 10266825 (-)

Expression


Co-expression Network