LOC110490904 (LOC106590606)


Basic Information

Item Value
gene id LOC110490904
gene name LOC106590606
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 10337017 ~ 10368733 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036943687.1
CCAGCCCagaggggagaaagaaagggagtggATCAATAGGCGCTAGTGTGGGTCTCACTTTCACTCCTTCAATCTCTCTGGTGGGCTGAATGCGCGAGCCCTCCGTTCTTCGAACACTATTTTTGTTCTCGAGCGCACGAGGAAGCAGGTCCAAATCCTGATTACAGCATCTTGCTCACTGAAATCCCGAAATATCGGGGGAAACCATGACAACAGCAGAAACCGGAGATTGAGAGCTGAGTCGGTTGACTGCCAGTAGAAAAACTCTGATGTGAGGGAAGAAACATCTTGTTTTACAAGAACAGTTTGATTTCAAATCCCTTGCTTTTTCTCTATCAAGTATGGAATCCTCGATGACGCGCGCAGAGCAGAATATCATGACAGTTCTATGGGGACTGATGGTCATGGCCTCCAGCGGCCATAGCGCACGAATTGTCAGTGGTCAGACGGTGTGTCAGGGAGGGGCGGAGCATCCGTGCTACAAGATGGCCTACTTCCGGGACATGACCAGCCGCGTTGCATTCTGGGAGGCCAGAAAGGCATGTGAGATGGATGGCGGGTCCCTGCTGAGCATAGAGAATGCTGCCGAGCAGAGACACATAGAGCACCTGCTAcaaGAGCTTCGGATCTCCTCAACAGCGGGGACAGAAACAGGGACTGGAGCAGGTACCGGTAACGGAGGAATAGCAGACGGTGATTTCTGGATCGGGCTGAcaaggacagatggagagaacaCACAGGAACAAGATCACTTCGCCTCCTGTCCCGACCTCTACCGCTGGACTGATGGGAGTGTGTCAcagttcagGAAGTGGTATTTTGACGAGCCGTCGTGCGGAGGGGAGGCGTGTGTAGTGATGTACCACCAGCCCACAGCGCTCCACGGGCTGGGCGGAGCCTACATGTACCAGTGGAACGACGACAGGTGCAACATGAAGCACAACTTCATCTGCAAATACGAACCAGAGAGCCATCTGGTGAAGGAGCAGGGGGACAGGCCTGGAGCTCGTGACCCAGatGTGACGGTGGCACAGACAATAGAGGTCAAACAGGCTGGTCCCAGTGAGGAGGATGGCGCCCCACGCGTAGTCATAGCCGGACCAGGGATGTTTCTGGTCTATGTGATCATCCCCACCATCCCTCTGCTGCTGCTCATCCTGGTGGCTTCTGGGACTTGCTGTTTCCAGATGTTCAGCAAGAGCAAACCGGGGACCAAAACCAGTGTTACCCAATCAACACTCTGGATATCCAAGACCCCTAAGACGGACAGCATGGAAGTATGAATGGCATGTGACATCACAAACAAGATCCTTGGAATGAACCGAACCAACAGAATGATAAAGCCTCTCCTCTGATACTATCCCCTGTTCCAAATACCTCTAACCATTCACCTCAACCAATGACCAGCTCTCGTCTTCCACATGTCTTTTGTCCAGTTTGTTCAtgtctccaccactcctcccctccacgccatccttctctccaccaccccatcctcctcctctccaccccatcctcctctccaccaccccatcccactctccaccaccccatcc
>XM_036943686.1
ACCAGCCCagaggggagaaagaaagggagtggATCAATAGGCGCTAGTGTGGGTCTCACTTTCACTCCTTCAATCTCTCTGGTGGGCTGAATGCGCGAGCCCTCCGTTCTTCGAACACTATTTTTGTTCTCGAGCGCACGAGGAAGCAGGTCCAAATCCTGATTACAGCATCTTGCTCACTGAAATCCCGAAATATCGGGGGAAACCATGACAACAGCAGAAACCGGAGATTGAGAGCTGAGTCGGTTGACTGCCAGTAGAAAAACTCTGATGTGAGGGAAGAAACATCTTGTTTTACAAGAACAGTTTGATTTCAAATCCCTTGCTTTTTCTCTATCAAGTATGGAATCCTCGATGACGCGCGCAGAGCAGAATATCATGACAGTTCTATGGGGACTGATGGTCATGGCCTCCAGCGGCCATAGCGCACGAATTGTCAGTGGTCAGACGGTGTGTCAGGGAGGGGCGGAGCATCCGTGCTACAAGATGGCCTACTTCCGGGACATGACCAGCCGCGTTGCATTCTGGGAGGCCAGAAAGGCATGTGAGATGGATGGCGGGTCCCTGCTGAGCATAGAGAATGCTGCCGAGCAGAGACACATAGAGCACCTGCTAcaaGAGCTTCGGATCTCCTCAACAGCGGGGACAGAAACAGGGACTGGAGCAGGTACCGGTAACGGAGGAATAGCAGACGGTGATTTCTGGATCGGGCTGAcaaggacagatggagagaacaCACAGGAACAAGATCACTTCGCCTCCTGTCCCGACCTCTACCGCTGGACTGATGGGAGTGTGTCAcagttcagGAAGTGGTATTTTGACGAGCCGTCGTGCGGAGGGGAGGCGTGTGTAGTGATGTACCACCAGCCCACAGCGCTCCACGGGCTGGGCGGAGCCTACATGTACCAGTGGAACGACGACAGGTGCAACATGAAGCACAACTTCATCTGCAAATACGAACCAGAGAGCCATCTGGTGAAGGAGCAGGGGGACAGGCCTGGAGCTCGTGACCCAGatGTGACGGTGGCACAGACAATAGAGGTCAAACAGGCTGGTCCCAGTGAGGAGGATGGCGCCCCACGCGTAGTCATAGCCGGACCAGGTGAGACAAGTGGAGGGATGTTTCTGGTCTATGTGATCATCCCCACCATCCCTCTGCTGCTGCTCATCCTGGTGGCTTCTGGGACTTGCTGTTTCCAGATGTTCAGCAAGAGCAAACCGGGGACCAAAACCAGTGTTACCCAATCAACACTCTGGATATCCAAGACCCCTAAGACGGACAGCATGGAAGTATGAATGGCATGTGACATCACAAACAAGATCCTTGGAATGAACCGAACCAACAGAATGATAAAGCCTCTCCTCTGATACTATCCCCTGTTCCAAATACCTCTAACCATTCACCTCAACCAATGACCAGCTCTCGTCTTCCACATGTCTTTTGTCCAGTTTGTTCAtgtctccaccactcctcccctccacgccatccttctctccaccaccccatcctcctcctctccaccccatcctcctctccaccaccccatcccactctccaccaccccatcc

Function

NR:

description
PREDICTED: chondrolectin-like isoform X1

GO:

id name namespace
GO:0007409 axonogenesis biological_process

KEGG:

id description
K10078 CHODL; chondrolectin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036943687.1 False 1556 mRNA 0.53 8 10337017 10368732
XM_036943686.1 True 1572 mRNA 0.53 8 10337017 10368733

Neighbor

gene id symbol gene type direction distance location
LOC110489570 LOC106590600 coding downstream 40975 10256343 ~ 10296042 (-)
LOC110489568 LOC106590608 coding downstream 90457 10220497 ~ 10246560 (-)
LOC110489563 cbln2b coding downstream 914994 9418351 ~ 9422023 (-)
LOC110514162 LOC106590620 coding downstream 1372804 8963472 ~ 8964213 (-)
LOC110489554 LOC106590627 coding downstream 1710823 8597494 ~ 8626194 (-)
LOC118938784 NA coding upstream 67760 10436449 ~ 10437044 (-)
trnac-gca-10 NA coding upstream 69662 10438395 ~ 10438466 (-)
LOC110489574 hgd coding upstream 76833 10445566 ~ 10459083 (-)
LOC110490822 NA coding upstream 225816 10594549 ~ 10600184 (-)
LOC110489577 LOC106590594 coding upstream 265327 10634060 ~ 10648867 (-)
G1256952 NA non-coding downstream 2931 10333715 ~ 10334086 (-)
G1256951 NA non-coding downstream 3413 10333321 ~ 10333604 (-)
G1256942 NA non-coding downstream 29788 10306892 ~ 10307229 (-)
G1256941 NA non-coding downstream 30798 10305958 ~ 10306219 (-)
G1256938 NA non-coding downstream 50135 10286651 ~ 10286882 (-)
G1256969 NA non-coding upstream 8198 10376931 ~ 10377209 (-)
G1257041 NA non-coding upstream 17922 10386655 ~ 10386975 (-)
G1257042 NA non-coding upstream 19051 10387784 ~ 10388134 (-)
G1257090 NA non-coding upstream 120128 10488861 ~ 10521170 (-)
G1256654 NA other downstream 462275 9873519 ~ 9874742 (-)
G1256146 NA other downstream 858199 9477813 ~ 9478818 (-)
G1255735 NA other downstream 1313014 9023584 ~ 9024003 (-)
G1254214 NA other downstream 3010561 7325712 ~ 7326456 (-)
G1257642 NA other upstream 449710 10818443 ~ 10818911 (-)
LOC110489593 LOC106590549 other upstream 2142139 12507315 ~ 12533443 (-)
LOC110489604 mllt10 other upstream 2973320 13288725 ~ 13369504 (-)
G1260199 NA other upstream 3017656 13386389 ~ 13387587 (-)
G1260226 LOC106590529 other upstream 3094132 13462865 ~ 13505161 (-)

Expression


Co-expression Network