ropn1l (ropn1l)


Basic Information

Item Value
gene id ropn1l
gene name ropn1l
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 11509626 ~ 11525612 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562318.2
caccctggctatctactccgatttcagagcactctcgtctgtgtGCCAGAGCGCATAATAACTgatgaatatggccggtgtcagtaaacgtcggcaaaataaaaagcgtaattaaattgttgccagcagcacagtcgctctagataacatgaaaacagctctGCCAGGGGGAGTGAAATGGTCAGGGTGAGGTGTTCTTTCATTGGTGTTTGGAATTAGCTTGCAAGCTAGGCAACGTTAGCTTGGGTGTTGAGGTCAGAACGCGCCGATCAACCCtactcggccagagcgtccagtttCCTCTGACTTTAGGGACGTACAATCTAACAAAACTCTGATTTTAGGGACGGACAATCTGACAAAACTTTGATTTTAGGGACGGACAATCTGACAAAACTCTGATTTTAGGGACGGACAATCTGACAAAACTCTGATTTTAGGGACGGACAATCTGACAAAACGCTGATTTTACTGACGGACAAATCTGACAACTCTGACTTTACGGACGCTCTGAGCGCACTCCAGATTTACGAACAAGCACATATCAAGCATCTGTAACGACGCGGTGCTGTTTGCCTTTGTTCACATCGCCTTCCGGTGGCGGAACAAATATTTTGCGGGGAAGTCCTGACTTCTTTCTGGTCCAATCACCGATGGTTGCTGTTGCTATGTGACGTTGACTGCAAACGTTAAGTTGCTATGGATTGAAAATGAAGTTGGCCGATCTCTAAACCAACCACTTTTTATATAATTTTAGCAAATTAACTCTCttacttgttttgttttttgttgttgatttttttaTCAACAAGAAAGATATTCGATTAGTATTCAGCAATGCCTCCTCCAGATACTATGTACTGTGAACAGCAAATCAACATCCCCCCTGAACTACCAGACATTCTTAAACAGTTCACCAAAGCTGCAATCAGAACCCAACCCCATGACATACTACAGTGGTCTGCAGCGTACTTCTCTGCCCTGTCCAAAGGAGACACTCTGCCAGCCAAAGATAGGCTGGAGATGCCCGTTGCCACACAGAAGACTGATACCGGATTGACTCCAGGCCTGCTGAAGGTCCTACACAAACAgCTGGCCCCTAAGGAGACGATCAGTAAGGAGGAGCTGCAGCAGAAGTGGAAGGGTCTGTGTCTGCCCTCAGAGCAGCTGGACACTCTGCTGGCCCTGGGGAACTTCAACGACAACATCCACTGGATGCAGTTCTTCGCCCTGGGCTGCAGCGCTCTGGGAGGGaCCATCATCAGTGCCCTGAAGTATGCGTGTGAAATCCTGACGGAGAATGAGGAGGGTGGAGCGGCGAGGATCCCCTTTGATACATTTGTAGGGCTGTACACTTACCTGGCCCACCTGGACGGAGAGATCCCCCAGGACCAGATAGACAGCTTCCTAAGCAGCCTGCAGGAGTCTGTGGAATGCCAAGGAGGGATGGTGCAGACAGCTAACTTCAGGGATGTGATTTTTCCTGAAATGTGATTTTTCCTGAAACCAGTCATTCCTGCTTTTTTGTCGCCATCCTCCAGTCCAACAGCATTAGAAGGGATGAGTTATACCCCCAAAAGTAAAATCCCATTTTCCCTGTCCTGAATTATAATGCTTTCTGTATTGTGGACCAGTGACTAGGACCCAGGACAGGAAGCCTCATTCAAATACGTGTCTGCCTATTGCctgtctataatactgtactgTGATATgacagtatgtgtgtatctgtatccATGTCCACTCTTATGGACTCTTTATTTACTTGTACTTTGGTTCTGGGCATTTTCAATCCACCTGGGACTGAATAAAGTTGTTTTATAGTA
>XM_036943700.1
ACAAAATGCACAGACATGCATACTGACCAATGCCTCCTCCAGATACTATGTACTGTGAACAGCAAATCAACATCCCCCCTGAACTACCAGACATTCTTAAACAGTTCACCAAAGCTGCAATCAGAACCCAACCCCATGACATACTACAGTGGTCTGCAGCGTACTTCTCTGCCCTGTCCAAAGGAGACACTCTGCCAGCCAAAGATAGGCTGGAGATGCCCGTTGCCACACAGAAGACTGATACCGGATTGACTCCAGGCCTGCTGAAGGTCCTACACAAACAgCTGGCCCCTAAGGAGACGATCAGTAAGGAGGAGCTGCAGCAGAAGTGGAAGGGTCTGTGTCTGCCCTCAGAGCAGCTGGACACTCTGCTGGCCCTGGGGAACTTCAACGACAACATCCACTGGATGCAGTTCTTCGCCCTGGGCTGCAGCGCTCTGGGAGGGaCCATCATCAGTGCCCTGAAGTATGCGTGTGAAATCCTGACGGAGAATGAGGAGGGTGGAGCGGCGAGGATCCCCTTTGATACATTTGTAGGGCTGTACACTTACCTGGCCCACCTGGACGGAGAGATCCCCCAGGACCAGATAGACAGCTTCCTAAGCAGCCTGCAGGAGTCTGTGGAATGCCAAGGAGGGATGGTGCAGACAGCTAACTTCAGGGATGTGATTTTTCCTGAAATGTGATTTTTCCTGAAACCAGTCATTCCTGCTTTTTTGTCGCCATCCTCCAGTCCAACAGCATTAGAAGGGATGAGTTATACCCCCAAAAGTAAAATCCCATTTTCCCTGTCCTGAATTATAATGCTTTCTGTATTGTGGACCAGTGACTAGGACCCAGGACAGGAAGCCTCATTCAAATACGTGTCTGCCTATTGCctgtctataatactgtactgTGATATgacagtatgtgtgtatctgtatccATGTCCACTCTTATGGACTCTTTATTTACTTGTACTTTGGTTCTGGGCATTTTCAATCCACCTGGGACTGAATAAAGTTGTTTTATAGTA

Function

symbol description
ropn1l Acts upstream of or within spermatid development. Predicted to be located in cilium. Predicted to be active in cytoplasm and motile cilium. Is expressed in testis. Orthologous to human ROPN1L (rhophilin associated tail protein 1 like).

NR:

description
ropporin-1-like protein isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562318.2 False 1826 mRNA 0.47 6 11509626 11525304
XM_036943700.1 True 1018 mRNA 0.49 6 11509626 11525612

Neighbor

gene id symbol gene type direction distance location
LOC110490908 LOC106590575 coding downstream 11177 11469774 ~ 11498449 (-)
LOC110489580 LOC106590592 coding downstream 713030 10775696 ~ 10796596 (-)
LOC110490906 LOC106578456 coding downstream 798491 10685921 ~ 10711135 (-)
LOC118938942 NA coding downstream 835081 10673749 ~ 10674545 (-)
LOC118938941 NA coding downstream 835881 10672950 ~ 10673745 (-)
LOC110489583 LOC106590573 coding upstream 14017 11539629 ~ 11557471 (-)
LOC118938787 NA coding upstream 499943 12025555 ~ 12029416 (-)
LOC110489593 LOC106590549 coding upstream 981703 12507315 ~ 12533443 (-)
LOC118938943 NA coding upstream 1195189 12720801 ~ 12784079 (-)
LOC110489587 NA coding upstream 1236800 12762412 ~ 12769791 (-)
G1258073 NA non-coding downstream 14228 11494707 ~ 11495398 (-)
G1258059 NA non-coding downstream 29925 11478346 ~ 11479701 (-)
G1258058 NA non-coding downstream 31794 11475878 ~ 11477832 (-)
G1258055 NA non-coding downstream 41125 11468175 ~ 11468501 (-)
G1258053 NA non-coding downstream 44079 11465292 ~ 11465547 (-)
G1258101 NA non-coding upstream 12450 11538062 ~ 11574096 (-)
G1258113 NA non-coding upstream 38218 11563830 ~ 11564522 (-)
G1258148 NA non-coding upstream 123056 11648668 ~ 11652331 (-)
G1258169 NA non-coding upstream 145415 11671027 ~ 11671618 (-)
G1257642 NA other downstream 690715 10818443 ~ 10818911 (-)
LOC110489570 LOC106590600 other downstream 1213636 10256343 ~ 10296042 (-)
G1256654 NA other downstream 1634884 9873519 ~ 9874742 (-)
G1256146 NA other downstream 2030808 9477813 ~ 9478818 (-)
G1255735 NA other downstream 2485623 9023584 ~ 9024003 (-)
LOC110489604 mllt10 other upstream 1816441 13288725 ~ 13369504 (-)
G1260199 NA other upstream 1860777 13386389 ~ 13387587 (-)
G1260226 LOC106590529 other upstream 1937253 13462865 ~ 13505161 (-)
G1260265 NA other upstream 2011458 13537070 ~ 13538208 (-)

Expression


Co-expression Network