LOC118938787


Basic Information

Item Value
gene id LOC118938787
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 12025555 ~ 12029416 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036041.1
ACAACCAGCATGCATAGACAACTCACCACCGAAGCCTGGGCTAAATCCTCATCACTGGCAATGCAAGGACAATTCATTATATGGAGAAAAAATATGAACCCACCAAAGCGAATGAATGGGGAGAACATAAATCTTACGTTACGGCAATAGGACATGAGTAAAGAAAATAGAGAACACATAATGAAGAGTTTGGGCCTCTTATGCTCTTTTTCCcccattttttttgttgattttatcAAAAATATTTAAGAACCGTGAGTTTCTGGATCCAGGGGACCTGCGTGTTATCAGTAGCCCAACGACTGGTCTCCTTCCCCGGCCACACAGCCACCCCACGGCTCGGTACAATGGCTACTCCTTTACACACAGCAGTCGCTATCCGGAGAGAGACCTGAACATGGTCTTCATCGTGTAGGGAAGCAGAAGATCGGTTCTCCTTCATGAAAAAAAATCGAAGGGGGTGAATTGACTGAGCTGGGTTTTGGGATCCTATGATAAGGCTGCTGGCAGCCAATACATCCTACTGCAGTAGCCTACAACTGAACCAGACCCACACCGACCCAGCCCAAACCAAGCTCGACCCAGGGCTACTGTTTCCCGGACTACTAGGGCTGTGACCTGTGTTAAATGTGGTCAGCCGAGGCGTCACTTTTCGCAGATCTGAGGCTGTTGCTTTTTAGCGTCCTCCAGGGATTCCAAACTGCTCTTCCCGGAGAGGCGACTCACTCGGCGGACAGGAGGAGCCAGACAAGCCGCTGCCTGGTTGGAAAACCAGCATGGAGCAAGAGGCAATGGACAGAGCGTTGCAGACAGCTTTTTGGTCTCACAGAATCGTAAGGCTATAACAAGAAACCTGGTGCGATGGACTAAAGGTTGTTCTGAATGTTTAATTAActattgattgattttattttcaGGTGGTCACTTATTTTCTTGCGAGGACGCAGACTAATACACTCGTAGCAGGCGACTGTGAGGGACGTGTCCATATATTGCAGACATTCACTTGTTTTTTGTTTTCACGGTGAAAGAAGAAAGTAAGGCGGATTTAAGGGCCTGATACTCTTTATCTTAACCTCATGCATTTGTAAATCCCCCGGTCGCCTCCCTCTCACTGTTCCAGCAGACGATGCTCTTTCTCCGGAGGCTGCTTGACAAAAGACCAAGTTAACTAACATTTCGCCCCATTTCCATATCTCAGAATCCCCAATTAATTATATATTATCTGTAaactcagagtgtgtgtgtgtgtcctcaggttAGACTGAAGGGTGAAATAAAACGATTAAAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036041.1 True 1293 mRNA 0.46 2 12025555 12029416

Neighbor

gene id symbol gene type direction distance location
LOC110489583 LOC106590573 coding downstream 468084 11539629 ~ 11557471 (-)
ropn1l ropn1l coding downstream 499943 11509626 ~ 11525612 (-)
LOC110490908 LOC106590575 coding downstream 527106 11469774 ~ 11498449 (-)
LOC110489580 LOC106590592 coding downstream 1228959 10775696 ~ 10796596 (-)
LOC110490906 LOC106578456 coding downstream 1314420 10685921 ~ 10711135 (-)
LOC110489593 LOC106590549 coding upstream 477899 12507315 ~ 12533443 (-)
LOC118938943 NA coding upstream 691385 12720801 ~ 12784079 (-)
LOC110489587 NA coding upstream 732996 12762412 ~ 12769791 (-)
LOC110489601 LOC106590561 coding upstream 1122958 13152176 ~ 13163864 (-)
LOC110489602 LOC106590560 coding upstream 1140932 13170348 ~ 13176530 (-)
G1258421 NA non-coding downstream 60182 11965169 ~ 11965373 (-)
G1258384 NA non-coding downstream 110720 11914388 ~ 11914835 (-)
G1258344 NA non-coding downstream 148585 11876693 ~ 11876970 (-)
G1258341 NA non-coding downstream 151826 11873481 ~ 11873729 (-)
G1258338 NA non-coding downstream 153008 11872309 ~ 11872547 (-)
G1258655 NA non-coding upstream 22961 12052377 ~ 12053178 (-)
G1258696 NA non-coding upstream 87019 12116435 ~ 12116919 (-)
G1258714 NA non-coding upstream 122007 12151423 ~ 12154287 (-)
G1258690 NA non-coding upstream 153593 12183009 ~ 12183289 (-)
G1258800 NA non-coding upstream 280645 12310061 ~ 12311867 (-)
G1257642 NA other downstream 1206644 10818443 ~ 10818911 (-)
LOC110489570 LOC106590600 other downstream 1729565 10256343 ~ 10296042 (-)
G1256654 NA other downstream 2150813 9873519 ~ 9874742 (-)
G1256146 NA other downstream 2546737 9477813 ~ 9478818 (-)
G1255735 NA other downstream 3001552 9023584 ~ 9024003 (-)
LOC110489604 mllt10 other upstream 1312637 13288725 ~ 13369504 (-)
G1260199 NA other upstream 1356973 13386389 ~ 13387587 (-)
G1260226 LOC106590529 other upstream 1433449 13462865 ~ 13505161 (-)
G1260265 NA other upstream 1507654 13537070 ~ 13538208 (-)

Expression


Co-expression Network