LOC110489600 (LOC106590541)


Basic Information

Item Value
gene id LOC110489600
gene name LOC106590541
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 13140028 ~ 13144023 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036943721.1
aatgggttttgagaaggaggcaaggagagaagATGCGAGGAGTATGAAATTGAGATTCTCTCTAAATCATTCCAGATGAGGGAGTGTCTCAAAAACAGAATGGCTTCCAGATCAGCTTCTCCTGAGGAGGATCTCTCCTGTCCTTTTTGCCGTGAGATCTTCAAAGATCCCGTGGTCTTGTCGTGTAGCCACAGCGTCTGTAAAGCCTGTCTGCAGGAATACTGGAAACAGAGGCGATCTCGGGAATGTCCAGTGTGCAGGAAGAGAAGCAAATCAAAAGGCAATCCTCCCTGTAACCTGGTCTTAAAGAACCTGTGTGAGGCCTTCTTACAGGAGAGGAGGCGCAGAGATTCAGGGGAGTCTGAGGAGCGCTGCAATCTGCACAACGAGAAACTCAAGCTCTTCTGTCTGGATGATAAGCAGCCCATCTGTGTTGTGTGTCAGGCCTCCAGAAAACATAAAAACCACAACTGCTGCCCCATAGATGAAACTGCACAGCATCAAAAGGAGGAACTCCAGACTTTTCTGAAGCCCTTACAGGAGAAGCTGGAGGTCTTTAATAAAGTTAAACAAACCTGTGACCAAACAGTAAAACACATTAAGAACAAGGCCCAGCACACAGAGATGGTGATTAAAAAAGATTTTCAGAAGCTCCACCAGTTTCtacgagaggaagaggaggtgaggATAGCTGttctgagggaggaagaggagcagaaGAGTCAGGTGATGAAGGAGAAGATTGAGGAGATGAGCAGAGAGATATCATCACTTTCAGACACAATCAGAGCCTTAGAGGAGGAGCTGAGAGCTGAAGACATCTCATTCCTGAAGAACTACAAGGCCATAGTGAGAAGAACCCAGTGCACACTGCCGGATCCACAGCTGGTCTCAGGGTCACTGATAGACGCAGCCAAACACCTGGGAAACCTGCAGTTCAGAGTCTGGGAGAAAATGCAAGGGATTGTGAAATACAGTCCTGTCACTCTGGACCCTAACACTGCCCACCTAGGTCTCGTCCTATCTGAGAATCTGACCATTGTGGAATGCACAAATGAGAAACAGCAGCTCCCTGATAACCCAGAGAGAATCAACCAGTGTACTCCGTGTGGCAAAGAAACCCAAGAGGATCAGAGTTCAGCTGGACTGGGACAGAGGAGCGCTGTCATTCTCTGACCCTGATGAGAACACATGtttacacactattacacacacttTCACTGAGAGAGTCTTTCCATACTTGGGTAGTTACTGCAAGCTCTCCCCTCTGAGAATCGTACCAGCGAAGACCTCTGTAAAAGTACAGCATAGTTAGAATCTCTGTCTAGCGCAACAGCATCTATTGATCATGATACGTGTGTCAATACATGTTTATAGGTCAAAAATAATCTTACAAATCAACTCAATTTTATTTTACAATGAACATAAAGTTGTTTGACAGTGACATGTATAGAATGTTAAAGGTAATGGAGCCCTTTTTCTCGATCACCCTTGTCACAGTGCACTACCATTCCCCTTCATGTGATGTTTCTGCTCATCTTACAAATCTACTTCACAGTCAGTCACACTTAACTGTATATTCATTGTAACATTATTTGGGAAGCTTAGCCATTAGAGGCTTCTGTTCTGGAGGATGCCAGATAGAGCATAATAACAATACAGATAATGATTCCCATCTGGCTCAAAAAACCATGAAGCATACTGCaatctagtggtggggttgtctCAGAGAGAGGTGTTGATTTCTTTAGAACAACCAACCCAGGTACTTGGTGCTGCTACCTGCCCATTGGTCACAGAGTGTTCATACTGTAGGCAGGTGAGCTGACCGATGCCTGGTCAGTGAGGACTAGGTATGTATGAAGTGTCCTGGCAGTTGCACAGCTCCAGGTGGTTTGACCTGTTAGGAGACAACCTGACCAGCCCTGTAGGCTTTGAACCTCAGCAGAGCAGGCCGACTCTGTCTGAGAGAGAAGGATCTGTCAAACTAAACGTGAGGTATTCTATCCGCCCTGTGTATTGTAAATGATTTGTAAGGCCTGTTGTATGTCTTGTTATTACCAGTAATTCTCTATAATAAAATTGGACAAAAA
>XM_036943720.1
gggttttgagaaggaggcaaggagagaagATGCGAGGAGTATGAAATTGAGATTCTCTCTAAATCATTCCAGATGAGGGAGTGTCTCAAAAACAGAATGGCTTCCAGATCAGCTTCTCCTGAGGAGGATCTCTCCTGTCCTTTTTGCCGTGAGATCTTCAAAGATCCCGTGGTCTTGTCGTGTAGCCACAGCGTCTGTAAAGCCTGTCTGCAGGAATACTGGAAACAGAGGCGATCTCGGGAATGTCCAGTGTGCAGGAAGAGAAGCAAATCAAAAGGCAATCCTCCCTGTAACCTGGTCTTAAAGAACCTGTGTGAGGCCTTCTTACAGGAGAGGAGGCGCAGAGATTCAGGGGAGTCTGAGGAGCGCTGCAATCTGCACAACGAGAAACTCAAGCTCTTCTGTCTGGATGATAAGCAGCCCATCTGTGTTGTGTGTCAGGCCTCCAGAAAACATAAAAACCACAACTGCTGCCCCATAGATGAAACTGCACAGCATCAAAAGGAGGAACTCCAGACTTTTCTGAAGCCCTTACAGGAGAAGCTGGAGGTCTTTAATAAAGTTAAACAAACCTGTGACCAAACAGTAAAACACATTAAGAACAAGGCCCAGCACACAGAGATGGTGATTAAAAAAGATTTTCAGAAGCTCCACCAGTTTCtacgagaggaagaggaggtgaggATAGCTGttctgagggaggaagaggagcagaaGAGTCAGGTGATGAAGGAGAAGATTGAGGAGATGAGCAGAGAGATATCATCACTTTCAGACACAATCAGAGCCTTAGAGGAGGAGCTGAGAGCTGAAGACATCTCATTCCTGAAGAACTACAAGGCCATAGTGAGAAGAACCCAGTGCACACTGCCGGATCCACAGCTGGTCTCAGGGTCACTGATAGACGCAGCCAAACACCTGGGAAACCTGCAGTTCAGAGTCTGGGAGAAAATGCAAGGGATTGTGAAATACAGTCCTGTCACTCTGGACCCTAACACTGCCCACCTAGGTCTCGTCCTATCTGAGAATCTGACCATTGTGGAATGCACAAATGAGAAACAGCAGCTCCCTGATAACCCAGAGAGGTTTGATTACTATGCATGGGTCTTGGGTTCTGAGGGATTTAACTCAGGGACACACAGCTGGGACGTTGAGGTTGGGAACAATACATTCTGGTCACTGGGTGTGATGGAAAAGTCTGTCCAGAGGAAGGGAGCAGTTAATACTGGACACTGGCGATTCTGGCACTTCAAAGGTAAATACGGAGCATTTTCCCCACCAGAATCAACCAGTGTACTCCGTGTGGCAAAGAAACCCAAGAGGATCAGAGTTCAGCTGGACTGGGACAGAGGAGCGCTGTCATTCTCTGACCCTGATGAGAACACATGtttacacactattacacacacttTCACTGAGAGAGTCTTTCCATACTTGGGTAGTTACTGCAAGCTCTCCCCTCTGAGAATCGTACCAGCGAAGACCTCTGTAAAAGTACAGCATAGTTAGAATCTCTGTCTAGCGCAACAGCATCTATTGATCATGATACGTGTGTCAATACATGTTTATAGGTCAAAAATAATCTTACAAATCAACTCAATTTTATTTTACAATGAACATAAAGTTGTTTGACAGTGACATGTATAGAATGTTAAAGGTAATGGAGCCCTTTTTCTCGATCACCCTTGTCACAGTGCACTACCATTCCCCTTCATGTGATGTTTCTGCTCATCTTACAAATCTACTTCACAGTCAGTCACACTTAACTGTATATTCATTGTAACATTATTTGGGAAGCTTAGCCATTAGAGGCTTCTGTTCTGGAGGATGCCAGATAGAGCATAATAACAATACAGATAATGATTCCCATCTGGCTCAAAAAACCATGAAGCATACTGCaatctagtggtggggttgtctCAGAGAGAGGTGTTGATTTCTTTAGAACAACCAACCCAGGTACTTGGTGCTGCTACCTGCCCATTGGTCACAGAGTGTTCATACTGTAGGCAGGTGAGCTGACCGATGCCTGGTCAGTGAGGACTAGGTATGTATGAAGTGTCCTGGCAGTTGCACAGCTCCAGGTGGTTTGACCTGTTAGGAGACAACCTGACCAGCCCTGTAGGCTTTGAACCTCAGCAGAGCAGGCCGACTCTGTCTGAGAGAGAAGGATCTGTCAAACTAAACGTGAGGTATTCTATCCGCCCTGTGTATTGTAAATGATTTGTAAGGCCTGTTGTATGTCTTGTTATTACCAGTAATTCTCTATAATAAAATTGGACAAAAA

Function

NR:

description
zinc-binding protein A33-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036943721.1 False 2093 mRNA 0.45 7 13140028 13144023
XM_036943720.1 True 2287 mRNA 0.46 6 13140031 13144023

Neighbor

gene id symbol gene type direction distance location
LOC110515947 LOC106578389 coding upstream 17477 12835920 ~ 13122551 (+)
sec61g NA coding upstream 419287 12718578 ~ 12720741 (+)
LOC110489589 LOC106590556 coding upstream 470300 12645767 ~ 12669728 (+)
LOC110489591 LOC106592044 coding upstream 500472 12562131 ~ 12639556 (+)
LOC110489594 LOC106578414 coding upstream 961675 12027834 ~ 12178353 (+)
LOC110489606 skida1 coding downstream 230058 13374081 ~ 13380357 (+)
armc3 armc3 coding downstream 315186 13459209 ~ 13480871 (+)
LOC100135934 LOC106590529 coding downstream 352312 13496335 ~ 13505165 (+)
LOC110489613 LOC106590529 coding downstream 370776 13514799 ~ 13517938 (+)
si:ch211-230g15.5 LOC106590521 coding downstream 388579 13532602 ~ 13551953 (+)
G1259455 NA non-coding upstream 1594 13138125 ~ 13138434 (+)
G1259454 NA non-coding upstream 3501 13136284 ~ 13136527 (+)
G1259452 NA non-coding upstream 9577 13129451 ~ 13130451 (+)
G1259420 NA non-coding upstream 24751 13060527 ~ 13115277 (+)
G1259460 NA non-coding downstream 4516 13148539 ~ 13150358 (+)
G1259465 ezh2 non-coding downstream 14750 13158773 ~ 13161478 (+)
G1259469 NA non-coding downstream 21148 13165171 ~ 13175859 (+)
G1259478 bmi1a non-coding downstream 74340 13218363 ~ 13219823 (+)
G1259731 NA non-coding downstream 102670 13246693 ~ 13247027 (+)
G1258375 NA other upstream 1234510 11905086 ~ 11905518 (+)
G1257945 NA other upstream 1676540 11461992 ~ 11463488 (+)
LOC110489585 dap1 other upstream 1678537 11441274 ~ 11461528 (+)
G1259481 NA other downstream 40270 13184293 ~ 13184567 (+)
LOC110490824 LOC106590516 other downstream 602644 13746336 ~ 13758266 (+)
G1260013 NA other downstream 725292 13869315 ~ 13870230 (+)
G1260074 NA other downstream 817478 13961501 ~ 13961816 (+)

Expression


Co-expression Network