LOC110489606 (skida1)


Basic Information

Item Value
gene id LOC110489606
gene name skida1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 13374081 ~ 13380357 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562341.2
CTCTGTCATTTTATTTGTGGCTAACCCTGCAGCCAGGATAGCAGCTGCATTTAGGCTCttattcgctctctctctttccctccctccccctctctctctctctctccctccctccctctgtagctcgctccctctccctacccctctcttctcttttttaTCCTCTCGTTGTGGCAGTGGTGTACACCTTCCTGCCGTGCTGACGGTCAGAGGGAGTGAGccggagaggagaggcaggtagGGGTTAGCAGACGGTCAGCAGCCGGACTGGCGGTACAATCCCTCGCATTCCTCCACCATGCCTGGTTCGGGGCAGGGCCTGAGGACAGATGCTGTGAACCCACCCGAGACCGCTCCATTTAACTCCGCATCTCAAAGTTTGCCTGTCAATGACAGCGTGGAGGTACTAGGACGCATCAGCAGCGGCCGACTGGCGCGTCAGAATGCCTTGAGCTCAAAACAAGGAGTTTATTCCTTTTTCTTTTCATAGCTGCACGAGAACAATTGATCGAGATAAATGCTTGGATTATTACAATAGAGAGGGAAAAGCAACATGGGAGACCTGAAGTGTGGGTTTGAGGAGATGCAGGGAGTGAGGCTGGGATACCTGCTGATTAAAGGGAAACAAATGTTCGCCCTCTCCCAGGTCTTCACTGACCTACTGAAAAATATTCCCCGGACCACCGTGCACAAACGCATGGACCACCTGAACGTTAAAAAACACCACTGTGATTTGGAGGAGCTGAGAAAGCTCAAAGCAATAAATTCTATTGCTTTCCACGCGGCTAAATGTACTCTGATATCACGGGAGGATGTGGAGGCGCTTTATTTCTCCTGCAAAACGGAACGCGTGTTAAAATCCAACAAAAGAAAAGCAAAGAAGGCCAGTTTACCCGAGGATGTGGGCGAGGGCAAGTTTCACGCGGACACGCACCCTACTGGGTTATGGAAGGAGAAAGTTTGGTTAAGTTTACACAGCGTGCCACAGCCTCTATCCCTCAACAAATCCGGCAAAAGAGAGCAACCAACCTCGCGCCCCGACTCCAATCTACCTCAAATTTACAATAAATCCCGACCGAGGGATTATTCCTTTGTCACCAAGTCGGCATGTAAACCTTTTAAAAACTATGAAACAGCTCAAATACCGGGCAATTGCGTCGCATTTAGCCAGAGACATTCGTTTTTCCGGAGCGTGGTGAGCCGTCAGCCGGTGTTGTTTAAATCCGCCATTGCTGCTCAGTCGAGGCTCTCTGCAACCGGCGACCTACTTCACAAAAGGAAGAGGAGGCGCGAGGGGGGCGGCGGCAGGGATAGGGACAGCGGCGGCGCGAGGCAGTCGTGGAGcaggagcagacacacacactcacaccctcaCGCACACCACCCGGTGCTTCTCGTGCAGCCCAAGTGCTGCAGCAAGCCAAAAACCCAGCACAACCACAACGGGACAGCTCTGGGCCATTTCCATCTTGGACACGAGTTTTACCTCGACCACGAAGCTCACCACCATCCTCACCCGCAGCAGCATGTAGGGGGTTTCCCTGAGAGCTACAGCAGTGACACTGAATCCAGCTGCTACTCAGAGCCGCTCAACAACGACTCGGACTTCGGCTCCAGTTTATCCACAAGCAGCAACTCTGGGACCTCtgatgaggaggaagatgaggaggatgaagaggagagccCGTTGGAGAGTTCTGAGGTCAGTTCTGACGAGGAGAGTTCATCTCAGTCTGACAGCAGCTCTGTGTCCAGTCAGGTCTCTGTCCAGTCCATCCGTTTCAGGAGGGCCCGGTTCTCCTCTGTCAACGCAACCAAAAATGTCCCCACTAGAACTCTGCCTAACGCTAaaactctctccactactctctccagCACTAAAACTCAGTCCAACAGTATAACTCTCTCGCACACTAAAGCACCTTTGCTCCTGCAGCCTACCTTCCACTACAGCCACCAGCAGCAACCATCTATACCGGTTGTCCAGGGTGGAACCAGCCAGGTGGACTATGCCAGTCAATGGAAACAACAGAAATATGAGTATACAGCCAGGGAGGCCAAgcaggacgcacacacacacaggttcagcTCGCCTGTCATCCGGGGGAGTTGTTtcactgagaggagagacaggaaggttCCTGAGTCCCAGGTCCAGACccaaagagagataaagagagccgAGCTGGTGTCCAGAACAGTTTATGCACTGAGCCCCTCACCTAACCCCAACGGGAACAAAGCGGTTCCTGCGCACAGGACACCGGGACACGCAAACAAATGCCCCCCAGTCCTGAGCTCACACTGCGCCCATGACAAAGACACAAAGCACTCCAAGCCTACAGACAACAACCAGCTTTCATTAGCTGCAAATCTAAAGAGAGAGGTGAGAATTAGCCCAATCCTGAAACTGCCCTCTCCGCTCAAAACTATTAAGACCGAGCCGGAAGAGCTCTCAGTGGCCGCGGGTCCCCTCCCCAACAGTGGCAGGGCGGTCAAGACTCCCCCCTTCAACCTGCAGAATGTGAAAATCAAAGTGGAGCAAAGCTATGATGAATTCGAATACAACAGTAAGGCCTCTGGGTTCCACTGCAAAGGAGACGAGGCGGATATCAACAATGGCCAGTACCCCGGCGGCGACATCAAACACGCTGCTGGCTGTTTCAACGAGACCAAAGCCATTGAAAGTTCTACTGGGGCTCCCAAGTCCTCATCCGGCTTGCAGGAATGCAGGAGCACTCGAGACACCCCTTGTTCGGAGGAGGGGGAGTATAAAAACGGAGTTGGGGTCAGGAAAAACTGCAGGACTCTGGTTCTGGGGAAGGAGCCTGGAATTTCGAGGGCGCAGGCGAAACAGAACGTGTCCAAAGTTGACAGGACTTTATCTTCTCGTCCCGTGGGCAAAGCAGAGATTTGTGATGGAAATATTGAGCATCTAACTGGGGCGAGTAAACGAAAACGCGCGTCCAATAATGTAGCACCCTCTCTGAAGAGGCCTTTCAGCTTCATGGCGAATTTCCCCGCTCCTCCGTCCCTGGTTGTGGGCAGCGACGGGGATTTAAGCCCAGCTTACTCTCTGAACTCTCTGGGGGGACCCCGACCTCCCACCCGCTCTCACCCCGTGTGGCGGTGGCAGCCTGGCGGTCGGACAGTCCCTCCCCCATCCGCTCAGAGAATCAGGAAATGTTGACGCTTTTTTCtttgacaaaaacaacaaaaacctgGATGGAAACCTACAGTACCTTGACTACAACATAAGTCTTAAAGTGAATGGGAGGCACTAATGTATTGCATCCTTCAGTTGTTTTTATTGAAATGTTTTCCTTTATTTGATGTTGTGGATTTAAAACATTCCTCGTTGTTGTGGAGTTGTAGATCAGTAATACATACACTGCTATTCTCCATAACGCGCGGAGCGTCTTTGAGCCTCTCATCCTATGCCATTGGATGACCCCTCCTCGTGGATTTATTCTGACTAACTAACTCTTCATAAGCTATCCACCATAAGCAATAGGCTACACGATTTGGCAAAATGTGCTTACTTTAATTTTTATCGGATCTATTGTTTCTGTTCCCCTTGATGCTGGACCTGTTGGATTGTACCAGGGTTTCAGCTCGACCTGTTGGATTTTACCAAGGTTTCAGTGAAGTAAACATTTGTGCTGTACTGCCTTTGTggtgagagaacgagaggggaagGCTCCCTCATAAAAATCACAGCACTCCTATGCTGGTCTGTGTTTTTCTATCATCAGCTGGGTAGGCTTAATCAACAGATGCAGGGTTTTTCTTAAATAACATGGTTAAGCCTACTGTCTGTCACCGTAGCCTTATTACGAGTTGTAGTTGCTGTTTTTCCATAGGATTTTAAAAACCTAATAGAAACCCTAATTTCGGTTTTAATTCGATGCTTGCCAGAGTTTGGGTCAATTGTATCTATTTTCAGATAACCGTTTTTGAATTCGATATCAAATGTAGATTCATTTCTTAATGCAAGTCAAAATTCATAACGTTAATTGCAGGATATATTGAATAGGACATAAGTGTAAGTGACTTGACTCTTATTCTGATCTGGCTGTTGCTTTCCGTTTTTCAGAGTGTTTGTGAACAGCCTTGTTTGTATTTCCTGAGAGTATTTCCTGCAAGCTTATGTTTGGCTGTAGTCAGACAGCTACCAGCgcccattcagacccataacagtGCAGACCTTACATACAGAcaatcacacacagagaaacGCCCATGCCTGACACAGATCACGCCTTTTCGTGAAAAACCACACGTCCTGACAACCTTGACATGTTTTTGCATTTTGGTTAGACATTTTCCTATATATTACAGGTTTATTGATTAATTGAAACACCATAGCCCTAATGTAGCCTACACGAAAAATCGTGAGAATACTGTGAAAATAACCCTCCTGTCCTACCAGTTTGGGGGTTGTACACTAAAACACAAACCCACCAAAGGGTGTCTTACAACACACTGAGCCTAATGTAATTTAGAAACAACACGTGGAGGCACAAGTGATAGGCCTACATGCATTGCACGTTGACACACGCGGCCCCATTTCAGCTTGAGGAGTGTAGGCTAGCTTGGCCTAATTATGAAAGAGGGGATTGTTTAAGAGAAgcttaaaataaaatacatttaaaataaggTTGGCTATTAGCTTATGTCCACTTAAATATTTAACTTAAAATTGAACATTTATAATTGGTTATTTGTGGCCATCCATAGCCAACACATGAAGTTGGATTGTTTACTATTTGCATATTTAGGTCAAACCGGTAATATCGTTGTTCATTGTACCCTTGCATCTGAAAGCATGCTGAAATGCCCAGCACAGCAAGTTGCTGTGGAATAGTTACATATTAGCTCAGTGGGTAAATGCGTAATTACCTGTTTACATTCTGCGGTGAAGCCCACCGTGCTGAATTGACCTGAGAAATTCACCATTCGGTCAAAATTACTCAAATATAGTCTACAGAGGATTAGCAGTCAGTCGAAAATGTGTAGGCCCAAACACAAAGCTAGTTGTACCTTATTATAATAGCATTGCACTCTGCAGTGATTCGAGATTTACACAAAATGCCATGGCCCTCTCCATATCCCCAGGTTAGGCTATACTTTCTTCTCTTGTGTATCAAGTCagaatttttttttctaattttgccaCGTAACCATAAGTAATATGTACACGCGATGAATGTATGTCAGACTTTTTTCATTATGTTAAATATTCTGATGTTGTTGATAGAAAAACACAGAATATAcctaaaaaaaatctgtcaaatgtAATTAAAGTTGCATCTAAATATCTATATTTCCCACAACGTAACATGTTGATTTTCTGAAGTTGTAGCAAAGAGAATAATCAAACCACATAACAACAAACCACATGCCTCATAATTCTCACAGCAACATCAGCAGTAAAGACTGAAACAAAGGCCCATTCGATTGGTGATTGTAGTTAAGAGAGACAAAAGCTTGAGTTAACTCAATGCTCAGATTTTGTATAGATTGATCTGTGTAAAATGCACCTCTACCACCCCAAACCATGCGTACTCCCCCTGTAGTATGTATGTATAGAAGCAAAGTTAAATAAATGTGCCTCTAAActaaacacagccattttatTCTCCATTTGAAAATGACGTGATCCCTCCAACCTAGAGGGAGTTGGGGGAAGGGGAAGATCTccctgggaggagagggagggggattcATATGTTCTAGGAGGGAAACTTTCACCCTGTAATGCCCGTGTCAAAGTTTACTGGGCCAGAGGAGGGATATACAGCGCAGCGTTCAgcgagggcacacacacacacacgcacgccccTCTGTAGGTACTTACCAATTCTCACGCCGATCACAGAGAGCATCACCCGGGCAAGGAGATGGTGGTAGAAGCGTTTACGGAGGGAACTACCACAGCAGAGCTCTGACAGTGACGCTATCAATGTAAACAATTGCATGGTGTCGCAGCTCGAGGCATGGGGCCCACCCCTCTATCTCCTGCTTTGCCCCGCTTTCTCACTCATTCCCCTAGCTTTTTGATACAATGCTTGAGGTCAGGATTTTGACATGAAATTTGAAGTCACTGGTTgtttatataaaaaatatatatttatttttgtgaattactgggtttttgtatgtcattGTTGTGTAGGAGGATGCACTCGAAATGAAAAACTTGAATGGTGGATTTCTGAAGCACTTTCCCTTTCTTCTGAGTTATGAAGTGTTCATTAAATACGTCTGAGTGTGA

Function

symbol description
skida1 Is expressed in several structures, including central nervous system; midbrain neural keel; neural plate; neural tube; and presumptive telencephalon. Orthologous to human SKIDA1 (SKI/DACH domain containing 1).

NR:

description
SKI/DACH domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562341.2 True 6277 mRNA 0.47 1 13374081 13380357

Neighbor

gene id symbol gene type direction distance location
LOC110489600 LOC106590541 coding upstream 230058 13140028 ~ 13144023 (+)
LOC110515947 LOC106578389 coding upstream 251530 12835920 ~ 13122551 (+)
sec61g NA coding upstream 653340 12718578 ~ 12720741 (+)
LOC110489589 LOC106590556 coding upstream 704353 12645767 ~ 12669728 (+)
LOC110489591 LOC106592044 coding upstream 734525 12562131 ~ 12639556 (+)
armc3 armc3 coding downstream 78852 13459209 ~ 13480871 (+)
LOC100135934 LOC106590529 coding downstream 115978 13496335 ~ 13505165 (+)
LOC110489613 LOC106590529 coding downstream 134442 13514799 ~ 13517938 (+)
si:ch211-230g15.5 LOC106590521 coding downstream 152245 13532602 ~ 13551953 (+)
LOC110489618 LOC106590519 coding downstream 318920 13699277 ~ 13709450 (+)
G1259738 NA non-coding upstream 114642 13259036 ~ 13259439 (+)
G1259731 NA non-coding upstream 127054 13246693 ~ 13247027 (+)
G1259478 bmi1a non-coding upstream 154258 13218363 ~ 13219823 (+)
G1259469 NA non-coding upstream 198222 13165171 ~ 13175859 (+)
G1259465 ezh2 non-coding upstream 212603 13158773 ~ 13161478 (+)
G1259783 NA non-coding downstream 21294 13401651 ~ 13405169 (+)
G1259784 LOC106578380 non-coding downstream 25925 13406282 ~ 13407325 (+)
G1259831 NA non-coding downstream 102325 13482682 ~ 13492227 (+)
G1259854 NA non-coding downstream 142659 13523016 ~ 13524334 (+)
G1259481 NA other upstream 189514 13184293 ~ 13184567 (+)
G1258375 NA other upstream 1468563 11905086 ~ 11905518 (+)
G1257945 NA other upstream 1910593 11461992 ~ 11463488 (+)
LOC110490824 LOC106590516 other downstream 366310 13746336 ~ 13758266 (+)
G1260013 NA other downstream 488958 13869315 ~ 13870230 (+)
G1260074 NA other downstream 581144 13961501 ~ 13961816 (+)
LOC110489635 LOC106590481 other downstream 830008 14186442 ~ 14217437 (+)

Expression


Co-expression Network