LOC100135934 (LOC106590529)


Basic Information

Item Value
gene id LOC100135934
gene name LOC106590529
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 13496335 ~ 13505165 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036943738.1
GTTGTATAAGGGTGAGATTTACATCtttgagggatggagagggactAACTGGAAACaagggggggaagaggggaggagtagaGAATAGAATAATGTTGGAGGATATAAGGACACTCAGTCAGCTCCCACCTTACTCATTTtcctcctcacacacaccccGGAGAGTCGAGCTATCACACACACAGATCTGTAACCATGAGGCTGAGCATAATGGGAGTTCTGCTGTGCGCTACGCTGGTCGCCTGTGTCAACGTCATGCCTCAGAAAGACTTCAACctggagaagATGGCTGGTAAGTGGTGGGTTGTGGGCTTTGCCACCAACGCCAAGTGGTTTATGAACCGTAAGGCTGGTATGAAGATGGGAACTTCCATGATGCTGCCCACTGCCGGAGGTAACCTGGACATCAGCAGCGCTATGCGcaaCTCTGATGGCTCTTGCTGGAGGATGACCGAACTGGCCAAGAAGACTGACATCCCAGGCCGCTTCACCTTCATCAGCCAGCgttggaACAATGAAAATGACATGCGTGTGGTAGCTGTCCAGTATGATGACTTTGCTCTGATCCACACCATCAAGACCAAACACGGAGTAACTGACGTTCTCAACAAACTCTTCAgTCGCACTCCAGAGGTGAGCGCAGATGTCCAGAAGAAGTTCATGCAGTTCTCTCTGGATACAGGAATCCTCTCTGGGAACATTGTTTTCCTGCCCAGGAACGGTGAATGTGCCGAGGCATAAATGTTCACTCATCCCATTCTCCCTCTACTACTCTTCTACTGGCATCTGTCTCCATTTCACATCCAAACTATTTTCCTGGAAGAAGACTGAAGACTGCATATATTGAGGGATTTATTCCACAAATTTGAGTTATTTTCAGCCAATTCCATTCAATatgaacaaaataataaaatatgatcaaaaaaagcatatttctcaa

Function

NR:

description
prostaglandine D synthase

GO: NA

KEGG:

id description
K01830 PTGDS; prostaglandin-H2 D-isomerase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036943738.1 True 940 mRNA 0.47 6 13496335 13505165

Neighbor

gene id symbol gene type direction distance location
armc3 armc3 coding upstream 15583 13459209 ~ 13480871 (+)
LOC110489606 skida1 coding upstream 115978 13374081 ~ 13380357 (+)
LOC110489600 LOC106590541 coding upstream 352312 13140028 ~ 13144023 (+)
LOC110515947 LOC106578389 coding upstream 373784 12835920 ~ 13122551 (+)
sec61g NA coding upstream 775594 12718578 ~ 12720741 (+)
LOC110489613 LOC106590529 coding downstream 9634 13514799 ~ 13517938 (+)
si:ch211-230g15.5 LOC106590521 coding downstream 27437 13532602 ~ 13551953 (+)
LOC110489618 LOC106590519 coding downstream 194112 13699277 ~ 13709450 (+)
LOC100135979 ck-2.1 coding downstream 217293 13722458 ~ 13725519 (+)
LOC118936270 LOC106590515 coding downstream 221114 13726279 ~ 13744753 (+)
G1259831 NA non-coding upstream 4108 13482682 ~ 13492227 (+)
G1259784 LOC106578380 non-coding upstream 89010 13406282 ~ 13407325 (+)
G1259783 NA non-coding upstream 91166 13401651 ~ 13405169 (+)
G1259738 NA non-coding upstream 236896 13259036 ~ 13259439 (+)
G1259854 NA non-coding downstream 17851 13523016 ~ 13524334 (+)
G1259861 NA non-coding downstream 26209 13531374 ~ 13531617 (+)
G1259864 NA non-coding downstream 30659 13535824 ~ 13536234 (+)
G1259876 LOC105022019 non-coding downstream 67988 13573153 ~ 13576134 (+)
G1259481 NA other upstream 311768 13184293 ~ 13184567 (+)
LOC110489589 LOC106590556 other upstream 832480 12645767 ~ 12669728 (+)
LOC110489591 LOC106592044 other upstream 856870 12562131 ~ 12639556 (+)
G1258375 NA other upstream 1590817 11905086 ~ 11905518 (+)
LOC110490824 LOC106590516 other downstream 241502 13746336 ~ 13758266 (+)
G1260013 NA other downstream 364150 13869315 ~ 13870230 (+)
G1260074 NA other downstream 456336 13961501 ~ 13961816 (+)
LOC110489635 LOC106590481 other downstream 705200 14186442 ~ 14217437 (+)
LOC110489644 NA other downstream 854932 14360048 ~ 14362944 (+)

Expression


Co-expression Network