LOC110489613 (LOC106590529)


Basic Information

Item Value
gene id LOC110489613
gene name LOC106590529
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 13514799 ~ 13517938 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945572.1
TTTTCTCCTCACACACACCCCGGAGAGTCgagccatcacacacacagatctgTAACCATGAGGCTGAGCATAATGGGAGTTCTGCTGTGCGCTACGCTGGTCGCCTGTGTCAACGTCATGCCTCAGAAAGACTTCAACctggagaagATGGCTGGTAAGTGGTGGGCCGTGGGCTTTGCCACCAACGCCAAGTGGTTTATGAACCGTAAGGCTAGTATGAAGATGGGAACTTCCATGATGCTGCCCACTGCCGGAGGTGACCTGGACATCAGCAGCGCCAACCAGAACGCTGATGGCTCTTGCTGGAGGATGACCGATCTGGCCAAGAAGACTGACATCCCAGGCCGCTTCACCTTCACCAGCCAGCgttGGAACAATGAAAATGACATGCGTGTGGTAGCTGTCCAGTATGATGACTTTGCTCTGATCCACACCATCAAGACCAAACACGGAGTAACTGACGTTCTCAACAAACTCTACAgTCGCACTCCAGAGGTGAGCGCAGATGTCCAGAAGAAGTTCACGCAGTTCTCTCTGGATACAGGAATCCTCTCTGGGAACATTGTTTTCCTGCCCAACAACGGTGAATGTGCCGAGGCATAAATGTTCACTCATCCCATTCTCCCTCTGCTACTCTTCTACTGGCATCTGTCTCCATTTCACATCCAAACTATTTTCCTGGAAGAAGACTGAAGACTGCAAACCCCAGCCACCCCCTCCCCCGGCAGAACAAACCCCAGCCACCCCCTCCCCCGGCAGAACAAACCCCAGCCACCCCCTCCCCCGGCAGAACAAACCCCAGCCACCCCCTCCCCCGGCAGAACAAACCCCTTCACCTTTAATCCCCACTATTCCTATAaaccactgtactgtacacaaGCTTTTTTTTACTGCAGATTTCTCGTTGAAATAAATAATCTTTCAAAACATACACA

Function

NR:

description
lipocalin-like

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0006810 transport biological_process
GO:0005576 extracellular region cellular_component
GO:0036094 small molecule binding molecular_function
GO:0005215 transporter activity molecular_function

KEGG:

id description
K01830 PTGDS; prostaglandin-H2 D-isomerase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945572.1 True 935 mRNA 0.52 6 13514799 13517938

Neighbor

gene id symbol gene type direction distance location
LOC100135934 LOC106590529 coding upstream 9634 13496335 ~ 13505165 (+)
armc3 armc3 coding upstream 34047 13459209 ~ 13480871 (+)
LOC110489606 skida1 coding upstream 134442 13374081 ~ 13380357 (+)
LOC110489600 LOC106590541 coding upstream 370776 13140028 ~ 13144023 (+)
LOC110515947 LOC106578389 coding upstream 392248 12835920 ~ 13122551 (+)
si:ch211-230g15.5 LOC106590521 coding downstream 14664 13532602 ~ 13551953 (+)
LOC110489618 LOC106590519 coding downstream 181339 13699277 ~ 13709450 (+)
LOC100135979 ck-2.1 coding downstream 204520 13722458 ~ 13725519 (+)
LOC118936270 LOC106590515 coding downstream 208341 13726279 ~ 13744753 (+)
LOC110490824 LOC106590516 coding downstream 228398 13746336 ~ 13758266 (+)
G1259831 NA non-coding upstream 22572 13482682 ~ 13492227 (+)
G1259784 LOC106578380 non-coding upstream 107474 13406282 ~ 13407325 (+)
G1259783 NA non-coding upstream 109630 13401651 ~ 13405169 (+)
G1259738 NA non-coding upstream 255360 13259036 ~ 13259439 (+)
G1259854 NA non-coding downstream 5078 13523016 ~ 13524334 (+)
G1259861 NA non-coding downstream 13436 13531374 ~ 13531617 (+)
G1259864 NA non-coding downstream 17886 13535824 ~ 13536234 (+)
G1259876 LOC105022019 non-coding downstream 55215 13573153 ~ 13576134 (+)
G1259481 NA other upstream 330232 13184293 ~ 13184567 (+)
LOC110489589 LOC106590556 other upstream 850944 12645767 ~ 12669728 (+)
LOC110489591 LOC106592044 other upstream 875334 12562131 ~ 12639556 (+)
G1258375 NA other upstream 1609281 11905086 ~ 11905518 (+)
G1260013 NA other downstream 351377 13869315 ~ 13870230 (+)
G1260074 NA other downstream 443563 13961501 ~ 13961816 (+)
LOC110489635 LOC106590481 other downstream 692427 14186442 ~ 14217437 (+)
LOC110489644 NA other downstream 842159 14360048 ~ 14362944 (+)

Expression


Co-expression Network