LOC110490824 (LOC106590516)


Basic Information

Item Value
gene id LOC110490824
gene name LOC106590516
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 13746336 ~ 13758266 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036303.1
CAGAAAAAACCACCATGCATTTGCAGCATCAGTTGTTCCCacgttttagtgtgtgtgtgtgtgtgtgtacctttaaTTAATCCATCCTTCTCAGAAAGACTGCTGCAGGGGGTTGGAGTGTTGGTGGTTTGTCAAGTGAGGTAGTAGGGGGTGAAataaagacagaaagggagagagagaggggcggaggtGTGAATTTACCATTACCAATACTGACCACATTGTACAATGACACACACATGAACAAAGCAAGGTGGGACTTGCCACTCATGCTGTGAATGTAACCCACAGTGAGATACAAAACCTGACACTTCCCCTGCCTTCCAGACAGACTCATCGCCACGGTTACCAGACCAATCAGTAGACCTCCGACCCGTCTCCGTAGTTTAGTGCCTAGCAGAGTAGCTATCTGTCTCTGTTGGTCTGTCGAACAGTCGGTACATCAATCTGTCCATCCGTCCAGCCAGTTAGTAAGCCAGTCaattagtcagtcagccagccagtcagtcagtcagccagcatGTCCGTGTTCGAATCCAGgaccctctctctggccctcctGATCACCATGTGTGTGTACCTCACCTCTGTGTCTGCTAACTATCGTCGGCCAACTAAGGTAACCACAAGTTGCTGCACAAGAGTGTCTGACTCTCACATCAAATTTAGACTGCAAGGATTCCACATCCAAAACGCCATGCCACCCTGTGTTGATGCCATCGTCTTCTACACAGTGAAAGGAGGGAAGATCTGCTCTGATCCCAAAGCACCCTGGGTCAACAAAAGAAAGCAATattTGAATGTGATGAAAAAGCAAAGAAGACATGTTTGACCATGACTGGAACCCTCTCCACTGTAAACACGCCTCCTCACCATCTCCtgcatccccctcccctcctcaccatctCCTGCATCCTCCTCCCAAGATCCTCTATCAGCATACTTCATTTTTCTGCTTATTTTTTGTCTGTCTGGTCCTTAAGATTATTTTGTTGTGTTTTAAATTGATAGAATTTCATTAAAATACAGTCTGTTGT
>TU1439503
ACTCATCGCCACGGTTACCAGACCAATCAGTAGACCTCCGACCCGTCTCCGTAGTTTAGTGCCTAGCAGAGTAGCTATCTGTCTCTGTTGGTCTGTCGAACAGTCGGTACATCAATCTGTCCATCCGTCCAGCCAGTTAGTAAGCCAGTCaattagtcagtcagccagccagtcagtcagtcagccagcatGTCCGTGTTCGAATCCAGgaccctctctctggccctcctGATCACCATGTGTGTGTACCTCACCTCTGTGTCTGCTAACTATCGTCGGCCAACTAAGGTAACCACAAGTTGCTGCACAAGAGTGTCTGACTCTCACATCAAATTTAGACTGCAAGGATTCCACATCCAAAACGCCATGCCACCCTGTGTTGATGCCATCGTCTTCTACACAGTGAAAGGAGGGAAGATCTGCTCTGATCCCAAAGCACCCTGGGTCAACAAAAGAAAGCAATattTGAATGTGATGAAAAAGCAAAGAAGACATGTTTGACCATGACTGGAACCCTCTCCACTGTAAACACGCCTCCTCACCATCTCCtgcatccccctcccctcctcaccatctCCTGCATCCTCCTCCCAAGATCCTCTATCAGCATACTTCATTTTTCTGCTTATTTTTTGTCTGTCT

Function

NR:

description
eotaxin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036303.1 False 1037 mRNA 0.47 4 13746336 13758266
TU1439503 True 642 TUCP 0.49 4 13746667 13758202

Neighbor

gene id symbol gene type direction distance location
LOC118936270 LOC106590515 coding upstream 1583 13726279 ~ 13744753 (+)
LOC100135979 ck-2.1 coding upstream 20817 13722458 ~ 13725519 (+)
LOC110489618 LOC106590519 coding upstream 36886 13699277 ~ 13709450 (+)
si:ch211-230g15.5 LOC106590521 coding upstream 194383 13532602 ~ 13551953 (+)
LOC110489613 LOC106590529 coding upstream 228398 13514799 ~ 13517938 (+)
LOC110489621 NA coding downstream 123395 13881661 ~ 13913203 (+)
LOC110489622 LOC106596459 coding downstream 173398 13931664 ~ 13948329 (+)
LOC118938945 NA coding downstream 200776 13959042 ~ 13960551 (+)
LOC110490921 LOC106590500 coding downstream 230090 13988356 ~ 13999764 (+)
LOC110489629 LOC106590463 coding downstream 294760 14053026 ~ 14057431 (+)
G1259931 NA non-coding upstream 77988 13668132 ~ 13668348 (+)
G1259908 NA non-coding upstream 123737 13618703 ~ 13622599 (+)
G1259875 LOC106590523 non-coding upstream 159208 13582569 ~ 13587128 (+)
G1259876 LOC105022019 non-coding upstream 170202 13573153 ~ 13576134 (+)
G1259980 LOC107549743 non-coding downstream 42533 13800799 ~ 13824401 (+)
G1260029 NA non-coding downstream 85465 13843731 ~ 13844636 (+)
G1260030 NA non-coding downstream 88982 13847248 ~ 13847863 (+)
G1260031 NA non-coding downstream 93850 13852116 ~ 13852416 (+)
G1260035 NA non-coding downstream 97698 13855964 ~ 13856231 (+)
armc3 armc3 other upstream 265465 13459209 ~ 13480871 (+)
G1259481 NA other upstream 561769 13184293 ~ 13184567 (+)
LOC110489589 LOC106590556 other upstream 1082481 12645767 ~ 12669728 (+)
LOC110489591 LOC106592044 other upstream 1106871 12562131 ~ 12639556 (+)
G1258375 NA other upstream 1840818 11905086 ~ 11905518 (+)
G1260013 NA other downstream 111049 13869315 ~ 13870230 (+)
G1260074 NA other downstream 203235 13961501 ~ 13961816 (+)
LOC110489635 LOC106590481 other downstream 452099 14186442 ~ 14217437 (+)
LOC110489644 NA other downstream 601831 14360048 ~ 14362944 (+)
G1260745 NA other downstream 908393 14666659 ~ 14668539 (+)

Expression


Co-expression Network