LOC110489629 (LOC106590463)


Basic Information

Item Value
gene id LOC110489629
gene name LOC106590463
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 14053026 ~ 14057431 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562363.2
AAATCATATATTCATTTGAAAATATCTTTGTAAATGTACTTACTTGGGAAAGGACCACAGACACAGTGTAAACAAGGACCACAGACACAGTGGAAACATATGGAACGTATTGACTAATATTTTAACATTTTCATATGCTGGAACTGGGTAAGTGTTTACAATAATAAAACCTGTCgattaaatatacattttatatGATCCATTCGAATAAAAATAATATAGCCTAGTAGAAACACTCCACTACAGTAGGTGGCGATAGAGCACATTTTCTGATAATAAAACAGAAGAAGAACAATTTGCTAGCTATTTTAGCAATCCATGATAAATTATAACAGTTTGGTAGCTGGAAAATATGATTGTGGTTGAATTTACACATATCCATGGATATTTCTGAATTCGCCACTGTTCGAACTTCATAGCCAGATAGAGAGAAAGTGGAAAGTCAACGTGCGGATATAAATTAGTTACTCTACACTGTAGATAGCTTAGCCACAGTGCTAACTGATAGCAGACAGCAATAACAAAGATACTGGTAGTCCGGGTCAGTGTGTGCAAACGCAGCTGTCACACCTCGGCGACGACACAACATTTGTAGCTAAAACGTACCTCAAGTTGTGACTCAGTTTCATTAGAAAATAACTGGCTAAAGAGAAGAACGCAATGGAAATCCATAAATGCATTGTTAGAGGATGCGCCAATCAATCGGACGCAATTATTCATTACAGTTTACCAGAGGAACCCCAGAGACGCCAACGGTGGCTACAGTTTATCAATGGAAGCAACCCGGGAGAGCAAATTCCAGATGTTTCCCGTTTATGTGGCGACCACTTTGCTGAAGAGTGCTTCACAGAACTTGATCTCGGTTTCACCACGAGGTTAATATTAAATCTTGACGCAATCCCATCGATTTATTCCTCTGATAAAACATCGGCTTATCGGAAACACACCGTGTACACTGAGAGGGCGAAGGGGACTGGGATGGTGGAAGGCAAAATGGCCGGCATCAAGGAGGAGCCAGTGGACAGGGAGTTGGATTCGCAGGTGAATCGCTGGAACAATTTGTTGGGTTCACTCAGCAAGTCGTTTAGTTCAATCAAAAAGGAAGATGTTGGGGAGGATGAGAGCAGTGCAGAGAGCTATGACCAGATTAGAGTGGTGAAAATAGGAGACTCGcacacaggagagaggaaggatgaTGGAGGAGAGTATGGGATGGAATACTCACACACTCACCCATatgaaggagaggatggaggctATGATGCCATGGTAACAGACCTTCACAGGAAAGAGAAAATGAATGTGACGGCGCGTGAGGTGGAGGGAGTGTTTGTGATAGAAAACTCAAACCCAGAGGAGGAATGTAGAGAATATGTGGTAGGGGAGGAGGTATGGCAgatggaggaaaggggagagagcaGGACGGTAGAGATGTGGGGGGAAAAGGGGAAACGGAGAAAGCTTCCGGGGCCGCAATGGTGGAGATATGAGCAAGAGAGGAGGAAAACCCAGGAAGACGAATGGAAGATGATTgcagagagggcgagggaggaagagagggagagacagaaaggtcgGACTGTGGAGGGGAAAAAGAGGGTGGCAGGGTTCCGCTGCCCACAGTGCTGCAAAACCTTCCAGTACCGAAGCGAGTTACTGGAGCATAAAACTAGCTGCTGCACTAATGCGAAATACGCCTGCCCAGTGCCACTCTGCCCCCAAATCTACCAATCCAAGGCTTCCCTGACGAATCACGTTTGCTTCCACCATGTGAAGGAGGACAACAAGGAGGAAAAGGACTTGGATGCTATCCGGAAAGCCAGAGGAGTCGGGGAGCATCAGAATAAATACCAACCCAGCCATAAGAAATTCTTCTGCCCACTCTGCAAAACATACTACAGAAACCAGATAGTCCTCGACAAGCACTCTCGTAGTCACACCAGTCTCCACAAAGTGATGTTGTGCTGCTCCTTCTGCTCTGTGGAGATGCTGAATAAATGCACAATGAAAAAGCACTACAACACGGAACACCCAGGCAGGGTCCCGCGCTGTGAGATGTGTGAAAGAAACTTCTCCTCGATCGACATCTTTCTAACACATCAGTTTAGACACGTGGCCGTGACTCCTTACTACTGCTATGAGTGTCACATCTACCAGCTCACCCAGAGGGGCCTCACTGTCCACCTGAAAAACCACGCTCTCAGACGCAACCAGAAGCAGCTAGACCAGCAGTCTGGGAAAATCAACAAACCTGACAATACAGGGAATCATAGTACAGCCCCTCTGAAGAAAAGTCCCTCCCCTCTACCAAACAACCATGCACATCTACAAGATAACCACGCCCATCTACAAGAGATCAAAGAAGAATTTATGACCAAATAAATAGAATCTCAATCTAGTTGTGTTTTTAACCCCTCCCCTTTGTCCCATAACCACCCCCCTCCTCTGACATGAACAACTGACTTGTCCCATAACCACCCCCCTCCTCTGACATGAACAACTGACTTGTCCCATAACCACCCCCCTCCTCTGACATGAACAACTGACTTGTCCCATAACCACCCCCCTCCTCTGACATGAACAACTGACTTGTCCCATAACCACCCCCCTCCTCTGACATGAACAACTGACTTGTCCCATAACCACCCCCCTCCTCTGACATGAACAACTGACTTGTCCCATAACCACCCCCCTCCTCTGACATGAACAACTGACTTGTCCCATAACCACCCCCCTCCTCTGACATGAACAACTGACTTGTCCCATAACCACCCCCCTCCTCTGACATGAACAACTGACTTGTCCCATAACCACCCCCCTCCTCTGACATGAACAACTGACTTGTCCCATAACCACCCCCCTCCTCTGACATGAACAACTGACTTGTCCCATAACCACCCCCCTCCTCTGACATGAACAACTGACTT
>XM_021562364.2
AAATCATATATTCATTTGAAAATATCTTTGTAAATGTACTTACTTGGGAAAGGACCACAGACACAGTGTAAACAAGGACCACAGACACAGTGGAAACATATGGAACGTATTGACTAATATTTTAACATTTTCATATGCTGGAACTGGGTAAGTGTTTACAATAATAAAACCTGTCgattaaatatacattttatatGATCCATTCGAATAAAAATAATATAGCCTAGTAGAAACACTCCACTACAGTAGGTGGCGATAGAGCACATTTTCTGATAATAAAACAGAAGAAGAACAATTTGCTAGCTATTTTAGCAATCCATGATAAATTATAACAGTTTGGTAGCTGGAAAATATGATTGTGGTTGAATTTACACATATCCATGGATATTTCTGAATTCGCCACTGTTCGAACTTCATAGCCAGATAGAGAGAAAGTGGAAAGTCAACGTGCGGATATAAATTAGTTACTCTACACTGTAGATAGCTTAGCCACAGTGCTAACTGATAGCAGACAGCAATAACAAAGATACTGGTAGTCCGGGTCAGTGTGTGCAAACGCAGCTGTCACACCTCGGCGACGACACAACATTTGTAGCTAAAACGTACCTCAAGTTGTGACTCAGTTTCATTAGAAAATAACTGGCTAAAGAGAAGAACGCAATGGAAATCCATAAATGCATTGTTAGAGGATGCGCCAATCAATCGGACGCAATTATTCATTACAGTTTACCAGAGGAACCCCAGAGACGCCAACGGTGGCTACAGTTTATCAATGGAAGCAACCCGGGAGAGCAAATTCCAGATGTTTCCCGTTTATGTGGCGACCACTTTGCTGAAGAGTGCTTCACAGAACTTGATCTCGGTTTCACCACGAGGTGTACACTGAGAGGGCGAAGGGGACTGGGATGGTGGAAGGCAAAATGGCCGGCATCAAGGAGGAGCCAGTGGACAGGGAGTTGGATTCGCAGGTGAATCGCTGGAACAATTTGTTGGGTTCACTCAGCAAGTCGTTTAGTTCAATCAAAAAGGAAGATGTTGGGGAGGATGAGAGCAGTGCAGAGAGCTATGACCAGATTAGAGTGGTGAAAATAGGAGACTCGcacacaggagagaggaaggatgaTGGAGGAGAGTATGGGATGGAATACTCACACACTCACCCATatgaaggagaggatggaggctATGATGCCATGGTAACAGACCTTCACAGGAAAGAGAAAATGAATGTGACGGCGCGTGAGGTGGAGGGAGTGTTTGTGATAGAAAACTCAAACCCAGAGGAGGAATGTAGAGAATATGTGGTAGGGGAGGAGGTATGGCAgatggaggaaaggggagagagcaGGACGGTAGAGATGTGGGGGGAAAAGGGGAAACGGAGAAAGCTTCCGGGGCCGCAATGGTGGAGATATGAGCAAGAGAGGAGGAAAACCCAGGAAGACGAATGGAAGATGATTgcagagagggcgagggaggaagagagggagagacagaaaggtcgGACTGTGGAGGGGAAAAAGAGGGTGGCAGGGTTCCGCTGCCCACAGTGCTGCAAAACCTTCCAGTACCGAAGCGAGTTACTGGAGCATAAAACTAGCTGCTGCACTAATGCGAAATACGCCTGCCCAGTGCCACTCTGCCCCCAAATCTACCAATCCAAGGCTTCCCTGACGAATCACGTTTGCTTCCACCATGTGAAGGAGGACAACAAGGAGGAAAAGGACTTGGATGCTATCCGGAAAGCCAGAGGAGTCGGGGAGCATCAGAATAAATACCAACCCAGCCATAAGAAATTCTTCTGCCCACTCTGCAAAACATACTACAGAAACCAGATAGTCCTCGACAAGCACTCTCGTAGTCACACCAGTCTCCACAAAGTGATGTTGTGCTGCTCCTTCTGCTCTGTGGAGATGCTGAATAAATGCACAATGAAAAAGCACTACAACACGGAACACCCAGGCAGGGTCCCGCGCTGTGAGATGTGTGAAAGAAACTTCTCCTCGATCGACATCTTTCTAACACATCAGTTTAGACACGTGGCCGTGACTCCTTACTACTGCTATGAGTGTCACATCTACCAGCTCACCCAGAGGGGCCTCACTGTCCACCTGAAAAACCACGCTCTCAGACGCAACCAGAAGCAGCTAGACCAGCAGTCTGGGAAAATCAACAAACCTGACAATACAGGGAATCATAGTACAGCCCCTCTGAAGAAAAGTCCCTCCCCTCTACCAAACAACCATGCACATCTACAAGATAACCACGCCCATCTACAAGAGATCAAAGAAGAATTTATGACCAAATAAATAGAATCTCAATCTAGTTGTGTTTTTAACCCCTCCCCTTTGTCCCATAACCACCCCCCTCCTCTGACATGAACAACTGACTTGTCCCATAACCACCCCCCTCCTCTGACATGAACAACTGACTTGTCCCATAACCACCCCCCTCCTCTGACATGAACAACTGACTTGTCCCATAACCACCCCCCTCCTCTGACATGAACAACTGACTTGTCCCATAACCACCCCCCTCCTCTGACATGAACAACTGACTTGTCCCATAACCACCCCCCTCCTCTGACATGAACAACTGACTTGTCCCATAACCACCCCCCTCCTCTGACATGAACAACTGACTTGTCCCATAACCACCCCCCTCCTCTGACATGAACAACTGACTTGTCCCATAACCACCCCCCTCCTCTGACATGAACAACTGACTTGTCCCATAACCACCCCCCTCCTCTGACATGAACAACTGACTTGTCCCATAACCACCCCCCTCCTCTGACATGAACAACTGACTTGTCCCATAACCACCCCCCTCCTCTGACATGAACAACTGACTT
>XR_005036049.1
AAATCATATATTCATTTGAAAATATCTTTGTAAATGTACTTACTTGGGAAAGGACCACAGACACAGTGTAAACAAGGACCACAGACACAGTGGAAACATATGGAACGTATTGACTAATATTTTAACATTTTCATATGCTGGAACTGGGTAAGTGTTTACAATAATAAAACCTGTCgattaaatatacattttatatGATCCATTCGAATAAAAATAATATAGCCTAGTAGAAACACTCCACTACAGTAGGTGGCGATAGAGCACATTTTCTGATAATAAAACAGAAGAAGAACAATTTGCTAGCTATTTTAGCAATCCATGATAAATTATAACAGTTTGGTAGCTGGAAAATATGATTGTGGTTGAATTTACACATATCCATGGATATTTCTGAATTCGCCACTGTTCGAACTTCATAGCCAGATAGAGAGAAAGTGGAAAGTCAACGTGCGGATATAAATTAGTTACTCTACACTGTAGATAGCTTAGCCACAGTGCTAACTGATAGCAGACAGCAATAACAAAGATACTGGTAGTCCGGGTCAGTGTGTGCAAACGCAGCTGTCACACCTCGGCGACGACACAACATTTGTAGCTAAAACGTACCTCAAGTTGTGACTCAGTTTCATTAGAAAATAACTGGCTAAAGAGAAGAACGCAATGGAAATCCATAAATGCATTGTTAGAGGATGCGCCAATCAATCGGACGCAATTATTCATTACAGTTTACCAGAGGAACCCCAGAGACGCCAACGGTGGCTACAGTTTATCAATGGAAGCAACCCGGGAGAGCAAATTCCAGATGTTTCCCGTTTATGTGGCGACCACTTTGCTGAAGAGTGCTTCACAGAACTTGATCTCGGTTTCACCACGAGGTTAATATTAAATCTTGACGCAATCCCATCGATTTATTCCTCTGATAAAACATCGGCTTATCGGAAACACACCGTGTACACTGAGAGGGCGAAGGGGACTGGGATGGTGGAAGGCAAAATGGCCGGCATCAAGGAGGAGCCAGTGGACAGGGAGTTGGATTCGCAGATGTATACATTAGGAACTCTCTGGGCCAATGGAAAGAAGAGAGAACTCTCTCTGGGCCAATCGGAAGCCAAGTGAACTTTCTCTGCCCAATAGAGATTAGACCGGAACGCCACTGTAGCCCTGTCATCCTGGAGCCTTTTGGTGTCGACTGGTTCCATTACAGAACATCTTTGATGCATTGTTCTCTATgctgttgactgtatgttgtctGAATAAAAAGCCTTTCTGTAGTA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562363.2 False 2927 mRNA 0.47 2 14053026 14056592
XM_021562364.2 False 2854 mRNA 0.47 2 14053026 14056592
XR_005036049.1 True 1274 mRNA 0.41 3 14053026 14057431

Neighbor

gene id symbol gene type direction distance location
LOC110490921 LOC106590500 coding upstream 53262 13988356 ~ 13999764 (+)
LOC118938945 NA coding upstream 92475 13959042 ~ 13960551 (+)
LOC110489622 LOC106596459 coding upstream 104697 13931664 ~ 13948329 (+)
LOC110489621 NA coding upstream 139823 13881661 ~ 13913203 (+)
LOC110490824 LOC106590516 coding upstream 294760 13746336 ~ 13758266 (+)
LOC110489635 LOC106590481 coding downstream 129011 14186442 ~ 14217437 (+)
sat1 LOC106590486 coding downstream 193995 14251426 ~ 14254054 (+)
LOC110489641 LOC106590489 coding downstream 241996 14299427 ~ 14311302 (+)
apodb apod coding downstream 294387 14351818 ~ 14356250 (+)
LOC110489644 NA coding downstream 302617 14360048 ~ 14362944 (+)
G1259884 NA non-coding upstream 36605 14014054 ~ 14016421 (+)
G1259894 LOC106590504 non-coding upstream 48427 14004001 ~ 14004599 (+)
G1260021 NA non-coding upstream 136314 13915674 ~ 13916712 (+)
G1260042 NA non-coding upstream 189059 13863615 ~ 13863967 (+)
G1260117 LOC106590479 non-coding downstream 7591 14065022 ~ 14065735 (+)
G1260497 LOC106579465 non-coding downstream 50150 14107581 ~ 14108446 (+)
G1260590 klhl15 non-coding downstream 216945 14274376 ~ 14277808 (+)
G1260629 NA non-coding downstream 305841 14363272 ~ 14364161 (+)
G1260649 NA non-coding downstream 321158 14378589 ~ 14381681 (+)
G1260074 NA other upstream 91210 13961501 ~ 13961816 (+)
G1260013 NA other upstream 182796 13869315 ~ 13870230 (+)
armc3 armc3 other upstream 572155 13459209 ~ 13480871 (+)
G1259481 NA other upstream 868459 13184293 ~ 13184567 (+)
G1260745 NA other downstream 609228 14666659 ~ 14668539 (+)
LOC110489673 LOC106590441 other downstream 847989 14905377 ~ 14914892 (+)
G1260946 LOC106590444 other downstream 963561 15020992 ~ 15022053 (+)

Expression


Co-expression Network