XLOC_003149 (FQ790208.1)


Basic Information

Item Value
gene id XLOC_003149
gene name FQ790208.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 2615070 ~ 2616023 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006213
GGAAGAATTGAATCGTTTGAATGTTTATTTAATCAAACGCTATGCCTGCGCAACGAATCATTTGACCGATTCAGTTCACGTTATTTGTTCCTCCATGTATTTGATCTCTAATGTTGAAATAGAGACTCCATTGTCCATTATATTCACAGTGAGCAAAATAAACCATGAGTGAAATCACAGAAATCAAATATCTGAAATGATTTAAAAgtttaaacattttcttttccgctCAGGAATCATCTTGAAAGACTCATTTGCCGGAGCGACTCTTTCTCTCCGAATCTACAGGTTCTTGTCCGTTTTAAACTCATGACTTCACTCACTATTTAATTTACAATCCACCTCATATGCTTTGAAACACAGACTGCTTTCCCTCTGTACAGCTGAACATAAAACTGTTCACACAAACCTGTTGCTGACTTTCAGTTCAAGCGCTTGTTTAACGCCGGACCTTAAAGCAAATGATCGATTTCATGAATTAAAGGATTTTAAAAGACTTCAGAAGATGGCAGAttgttgttttctctttttcctcaatcagggtttctgcggggtcttaaaatgtcttaaacctC

Function

GO:

id name namespace
GO:0001708 cell fate specification biological_process
GO:0021548 pons development biological_process
GO:0043009 chordate embryonic development biological_process
GO:0021571 rhombomere 5 development biological_process
GO:0021572 rhombomere 6 development biological_process
GO:0061448 connective tissue development biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0009888 tissue development biological_process
GO:0051216 cartilage development biological_process
GO:0048568 embryonic organ development biological_process
GO:0048857 neural nucleus development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0060485 mesenchyme development biological_process
GO:0007369 gastrulation biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:0030903 notochord development biological_process
GO:0048702 embryonic neurocranium morphogenesis biological_process
GO:0007167 enzyme linked receptor protein signaling pathway biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0005104 fibroblast growth factor receptor binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000101048

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006213 True 575 lncRNA 0.37 2 2615070 2616023

Neighbor

gene id symbol gene type direction distance location
XLOC_003148 dnajc14 coding upstream 5246 2596667 ~ 2609824 (+)
XLOC_003147 zgc:113184 coding upstream 48378 2554856 ~ 2566692 (+)
XLOC_003146 NABP2 coding upstream 101977 2506516 ~ 2513093 (+)
XLOC_003145 tp53rk coding upstream 148191 2458264 ~ 2466879 (+)
XLOC_003144 csnk2a4 coding upstream 168724 2434262 ~ 2446346 (+)
XLOC_003150 si:ch211-160o17.3 coding downstream 17720 2633743 ~ 2649496 (+)
XLOC_003151 si:ch211-160o17.4 coding downstream 33641 2649664 ~ 2684595 (+)
XLOC_003152 b3galt6 coding downstream 69089 2685112 ~ 2690933 (+)
XLOC_003153 tmem167b coding downstream 83928 2699951 ~ 2707028 (+)
XLOC_003154 mapk14b coding downstream 94507 2710530 ~ 2760373 (+)
XLOC_003250 BX324177.11 misc downstream 8729780 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 8756863 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 8770339 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 8802010 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 8813370 11429393 ~ 11429689 (+)
XLOC_003140 NA non-coding upstream 294715 2308209 ~ 2320355 (+)
XLOC_003139 NA non-coding upstream 409272 2198530 ~ 2205798 (+)
XLOC_003138 mir196c non-coding upstream 424340 2190621 ~ 2190730 (+)
XLOC_003132 NA non-coding upstream 617660 1935684 ~ 1997410 (+)
XLOC_003156 CT583672.1 non-coding downstream 211530 2827553 ~ 2828675 (+)
XLOC_003159 dre-mir-724 non-coding downstream 560663 3176686 ~ 3176770 (+)
XLOC_003160 NA non-coding downstream 587464 3203487 ~ 3206698 (+)
XLOC_003164 NA non-coding downstream 715090 3331113 ~ 3333714 (+)
XLOC_003169 NA non-coding downstream 999727 3615750 ~ 3735803 (+)
XLOC_003133 NA non-coding upstream 662476 1951631 ~ 1952594 (+)

Expression


Co-expression Network