LOC110489641 (LOC106590489)


Basic Information

Item Value
gene id LOC110489641
gene name LOC106590489
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 14299427 ~ 14311302 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562378.2
GAAACTCTTACTGCGTATAATTCAGTGTTAAATCATTCAGGCAATCTCCACAGCATACTGAAATTCCTTTTATGTTCAAGATGGCGGGTGACGAGTCTGGAATAACGCTGGGTCAGCCTCATCTTTCCAAACAAGATTTAAATTCGCTGGATGTGTCCATCCTGACCCCACTCTCCCAAGAGATCATCAGCAGACAGGCCACCATCAACATTGGCACCATTGGTCATGTGGCCCACGGAAAGTCTACTGTGGTCAAGGCCATCTCAGGGGTTCACACTGTCCGCTTCAAGAACGAGCTGGAGAGGAACATCACCATTAAGCTAGGTTACGCTAACGCCAAGGTGTATAAGCTAGATGACCCCAGCTGTCCCAGGCCAGAGTGCTACAGGTCGTGTGGCTCCAGTACTCCTGATGAGTTCCCTACAGACATCCCTGGAACCAAGGGCAACTTCAAACTGGTCAGACACGTGTCCTTCGTGGACTGTCCCGGTCACGATATTCTGATGGCCACCATGCTGAACGGAGCAGCTGTCATGGACGCTGCCCTCCTGCTCATTGCGGGTAACGAGTCATGTCCCCAGCCCCAGACCTCTGAGCACCTGGCTGCCATAGAGATCATGAAGCTCAAACACATCCTGATCCTCCAGAACAAGATTGATCTGGTCAAGGAGAGCCAGGCCAAGGAGCAGTACGAACAGATCCTAGCCTTCGTACAGGGTACAGTGGCAGAGGGAGCACCTATCATTCCTATCTCAGCACAGTTGAAGTACAACATAGAGGTGGTGTGTGAATACATTGTCAAGAAGATCCCTGTCCCCATCAGAGACTTCACCTCAGAACCCAGACTCATCGTGATCCGGTCATTTGACGTCAACAAGCCGGGTTGTGAGGTAGATGACCTGAAAGGAGGTGTGGCTGGAGGCAGTATACTAAAAGGCGTGCTCAAGGTGGGACAGGAGTTGGAGGTGCGTCCAGGCATTGTGTCTAAGGACCATGAGGGGAAGCTGATGTGTAAACCCATCTTTTCCAAGATCGTCTCTCTGTTCGCTGAACACAACGACCTGCAATATGCGGCACCCGGGGGACTCATTGGTGTTGGCACTAAGATTGACCCGACCCTGTGCAGAGCTGACCGTATGGTTGGTCAGGTGCTGGGAGCGGTCGGAGCGCTACCAGAGATCTTCACAGAGCTGGAAATCTCCTACTTCCTGCTGAGGAGGCTTCTGGGAGTCCGCACTGAAGGAGACAAGAAGGCTGCCAAGGTCCAGAAGCTGTCTAAGAACGAGGTGTTGATGGTGAACATCGGCAGTCTGTCTACGGGCGGCAGAGTGAGTGCAGTGAAGGCTGATTTGGCCAAGATCGTCCTGACCAACCCTGTCTGCACTGAGGTCGGAGAGAAGATTGCGCTCAGTCGTCGCGTGGAGAAACATTGGCGTCTGATTGGCTGGGGCCAGATCAGGAGGGGGGTGACCATCACCCCCACAGTGGACGACGACTGAGGAACCAGACAGGAAGTGTCTTCATGGCAACACCCTCTCAACCAGACGACATGCCCAACATACTCTTTTTCATACACCAACACCTGTTCAAGTTGAAAAAGAGGAATACCTGCCccaggagggggaagggaggaggctGCATCGCAATAGTCTAAACTGGCTTCATCACTTTGTCTTCTCTCATCTGCACTGATAGATAAACAACTGGGGCAGGTGGAAACAGATTACTCCTATTAGAAATCTACTGCTTACCTGTCTTTTTCAGATCAGTGTAGACGAAGGAGaatagacaaggagaggaagccatAGTAGAGTATTGAGATACGTCCGGGGAGGGTTAAGGGAAGGTAGCTGGTCAGTGGTTTTAAGATGAGTCTCCCAAAGCAGGACTGTGACTGATTGAACAGGGGGCAACACTCACAATGCtacagatagaaatgtaatggaAAGAGCTGAGATGACACGAGTCCCTATTCATTCCATTTGATGGAAAATCCTGTCTTGTTATATTTCTATCTGACTGTACAGTAAGCGTTGCTCCCTCCTGAATAAGCCCTGCCACAGACGGGAGAGGAACAGAAACTTGATAGTGCTGTGTTCTGCTGTCAACTGCTTTCAGTAGAATCTAATAAAATGGACATTTGGAACAAAA

Function

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03242 EIF2S3; translation initiation factor 2 subunit 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562378.2 True 2151 mRNA 0.50 11 14299427 14311302

Neighbor

gene id symbol gene type direction distance location
sat1 LOC106590486 coding upstream 45373 14251426 ~ 14254054 (+)
LOC110489635 LOC106590481 coding upstream 81990 14186442 ~ 14217437 (+)
LOC110489629 LOC106590463 coding upstream 241996 14053026 ~ 14057431 (+)
LOC110490921 LOC106590500 coding upstream 299663 13988356 ~ 13999764 (+)
LOC118938945 NA coding upstream 338876 13959042 ~ 13960551 (+)
apodb apod coding downstream 40516 14351818 ~ 14356250 (+)
LOC110489644 NA coding downstream 48746 14360048 ~ 14362944 (+)
LOC110489645 LOC106590496 coding downstream 56860 14368162 ~ 14374980 (+)
si:ch211-161h7.8 kat coding downstream 242533 14553835 ~ 14563740 (+)
LOC110490825 LOC106590468 coding downstream 266140 14577442 ~ 14612644 (+)
G1260590 klhl15 non-coding upstream 21619 14274376 ~ 14277808 (+)
G1260497 LOC106579465 non-coding upstream 190981 14107581 ~ 14108446 (+)
G1260117 LOC106590479 non-coding upstream 233692 14065022 ~ 14065735 (+)
G1259884 NA non-coding upstream 283006 14014054 ~ 14016421 (+)
G1259894 LOC106590504 non-coding upstream 294828 14004001 ~ 14004599 (+)
G1260629 NA non-coding downstream 51970 14363272 ~ 14364161 (+)
G1260649 NA non-coding downstream 67287 14378589 ~ 14381681 (+)
G1260638 NA non-coding downstream 101535 14412837 ~ 14422434 (+)
G1260631 NA non-coding downstream 133849 14445151 ~ 14451109 (+)
G1260637 NA non-coding downstream 148482 14459784 ~ 14460556 (+)
G1260074 NA other upstream 337611 13961501 ~ 13961816 (+)
G1260013 NA other upstream 429197 13869315 ~ 13870230 (+)
LOC110490824 LOC106590516 other upstream 541225 13746336 ~ 13758266 (+)
armc3 armc3 other upstream 818556 13459209 ~ 13480871 (+)
G1260745 NA other downstream 355357 14666659 ~ 14668539 (+)
LOC110489673 LOC106590441 other downstream 594118 14905377 ~ 14914892 (+)
G1260946 LOC106590444 other downstream 709690 15020992 ~ 15022053 (+)
LOC110489660 pan3 other downstream 881710 15166247 ~ 15194945 (+)

Expression


Co-expression Network