apodb (apod)


Basic Information

Item Value
gene id apodb
gene name apod
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 14351818 ~ 14356250 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036943803.1
AACAATTTCGCTAATCACCTGCCTTGTGCTGGGTGCACTCTCAGTGAtgactcagacagacacacagacacacactcactctctgtcATCCCAAGACCTAAGCATCGCTTCAACTTTAGGAAATATACTCTGTTGAATATACATACTTCTGCAGCTAATATTTTTCCCTCAGGTGTGTAAAAAGAGCACAGAAAAATGTTTCCTATATTTTGGatcctcctccttcttcctctggTCTCCGCCCAGACATACCATTGGGGTCCATGCCCCACCCCCAGTGTCCAGCCCAACTTCAGCCTGcagcagTACCTGGGCACGTGGTATGAGATAGCGAAACTTCCAGCATCCTTTGAGAGAGGGAAATGCATCCAGGCCGATTACACTCTGAGGGGAGACGGCACCATCCGAGTCCTCAACTCCCAGTTCTATAAAGGTAAGGTGCGGACTGTGGAGGGGACAGCAGTGGTCCAGGACCCAAAAAAACCAGCCAAACTGGGAGTCAGCTTCTCCTACTTCACTCCCTACAGTCCGTACTGGGTGCTGAGTACAGACTATGTGAGTGGAGCGGTGGTGTACAGCTGTACTGACGTGTTGAGGATTTTCCATGTCGACTACGCCTGGATCCTGGGACGTTCCCGCTTCTTGCCCGCAGAGGAAGTAGAGTACGCCAGGCAGCTGCTGGCTAAAGAAAACATTGACACCTTCAAGATGAGGGTTACTGACCAAACAGGCTGCGACTAGATGGAGGTTTAGAGGTCAGCGGTTAGGGTTGTAGGGTTAAAGGGTTATCTATGTGTCCACTTCCCTAGTCCTAACCCCTAGACACTTCTCCCTCTACTCCCAATGCTCTATCCACATGTCATTTGAGCCCTACCTCTATAGATACAGACAGAAATACGACCATCACATACTAGACCTAGTGTCCACCTCTCGtgtctaattaagcaataaggcacgagggggtgtggtatattgcaTGACGCAtctggagtgcctggacacagcccttagccgtggtatattggccatgtaccacaaacccccgaggtgccttattgatattataaactggttaccaacataattagagcagtaaaaataaatgttttgtcatacccgtggtatacggtctgatataccttggcagtcagccaatcagcattcagggctcaaaccacccattTTATAATAGTTTATATACACTGACAGTTGGTCTTATAATCTTATCATCCAACATACCTACCATCTCATTTAGACTATCTATcacatgtattttatatttagAGACTTTATAGTCTGTAGTTGGAGATCTGTTAGTTTATAAGGTAGTTTGAATTATTAAATGTCTAGCTATGTAACAATGGTGACGGTTTCTTCATGGGATGAATAGAATGCTGACAGCATGAGTCAGTTCTCTGAGGGTTGGGCACGGTTCCTATaggggcaaacacacacacacgcagtatcCTCATCATAGAAAGATGTTCACAGGTAAGGGAACTGGAGGAACAGGTTTAGCTGTAAAGGTTTCATGTAGTCTGTATATTAGTAATTAAAGTTTTGTTTTGATGTGAAA

Function

symbol description
apod Enables cholesterol binding activity. Involved in several processes, including negative regulation of cell-matrix adhesion; negative regulation of macromolecule metabolic process; and negative regulation of protein import into nucleus. Located in extracellular space and perinuclear region of cytoplasm. Implicated in obesity and type 2 diabetes mellitus. Biomarker of Alzheimer's disease; gestational diabetes; and type 2 diabetes mellitus.

NR:

description
apolipoprotein D-like

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005576 extracellular region cellular_component
GO:0005215 transporter activity molecular_function
GO:0008289 lipid binding molecular_function

KEGG:

id description
K03098 APOD; apolipoprotein D and lipocalin family protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036943803.1 True 1576 mRNA 0.45 5 14351818 14356250

Neighbor

gene id symbol gene type direction distance location
LOC110489641 LOC106590489 coding upstream 40516 14299427 ~ 14311302 (+)
sat1 LOC106590486 coding upstream 97764 14251426 ~ 14254054 (+)
LOC110489635 LOC106590481 coding upstream 134381 14186442 ~ 14217437 (+)
LOC110489629 LOC106590463 coding upstream 294387 14053026 ~ 14057431 (+)
LOC110490921 LOC106590500 coding upstream 352054 13988356 ~ 13999764 (+)
LOC110489644 NA coding downstream 3798 14360048 ~ 14362944 (+)
LOC110489645 LOC106590496 coding downstream 11912 14368162 ~ 14374980 (+)
si:ch211-161h7.8 kat coding downstream 197585 14553835 ~ 14563740 (+)
LOC110490825 LOC106590468 coding downstream 221192 14577442 ~ 14612644 (+)
LOC110489651 ccdc191 coding downstream 336007 14692257 ~ 14731090 (+)
G1260590 klhl15 non-coding upstream 74010 14274376 ~ 14277808 (+)
G1260497 LOC106579465 non-coding upstream 243372 14107581 ~ 14108446 (+)
G1260117 LOC106590479 non-coding upstream 286083 14065022 ~ 14065735 (+)
G1259884 NA non-coding upstream 335397 14014054 ~ 14016421 (+)
G1259894 LOC106590504 non-coding upstream 347219 14004001 ~ 14004599 (+)
G1260629 NA non-coding downstream 7022 14363272 ~ 14364161 (+)
G1260649 NA non-coding downstream 22339 14378589 ~ 14381681 (+)
G1260638 NA non-coding downstream 56587 14412837 ~ 14422434 (+)
G1260631 NA non-coding downstream 88901 14445151 ~ 14451109 (+)
G1260637 NA non-coding downstream 103534 14459784 ~ 14460556 (+)
G1260074 NA other upstream 390002 13961501 ~ 13961816 (+)
G1260013 NA other upstream 481588 13869315 ~ 13870230 (+)
LOC110490824 LOC106590516 other upstream 593616 13746336 ~ 13758266 (+)
armc3 armc3 other upstream 870947 13459209 ~ 13480871 (+)
G1260745 NA other downstream 310409 14666659 ~ 14668539 (+)
LOC110489673 LOC106590441 other downstream 549170 14905377 ~ 14914892 (+)
G1260946 LOC106590444 other downstream 664742 15020992 ~ 15022053 (+)
LOC110489660 pan3 other downstream 836762 15166247 ~ 15194945 (+)

Expression


Co-expression Network