LOC110490924 (LOC106590497)


Basic Information

Item Value
gene id LOC110490924
gene name LOC106590497
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 14394884 ~ 14406212 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036943808.1
TTCGGAGTTGCTTCACCTGATGAAGGGATGTTGTTTTTCAGCTAACAGTGAACGAACTTTCACTTTTTTAGTGGTGTCCTTTTTCTCTCCAGCCCATGAGCAGAGTTGGATGTGAGTAAACACTACAATGTTTCACGCGGCTGTTTGTGCTCCTCTCGTGATGggctgacagagacagagagaccaaacCAAATGGATTATCTTTCCTCCAAACTCCACCGGTCACCTGTAGAGTAACTAACGGGCCGGTATGATAGTGTCTAACGTTAGTCTGAGCTGCGGCGTGAGCTGCCCATGGGGAGTCAGTGACGGTAAGACGGTGGTCACGCAGGGAGGAGGCTCAGGTTCTCTGAGTCCTACGGGACATCTCGTGGTGGCAGTGTGTCTGGGGTTCATAGGTACATTCGGTTTCCTCAACAACCTCCTGGTGTTAACGTTATTCTGCCGGTACCATACGCTGCGCTCGCCCATCAACGTCCtgctgttgagtgtgtgtgtttcggaCCTGCTGGTCTGCGTGCTCGGGACACCGTTCAGCTTCGCTGCTGCTACGCAGGGCAGGTGGCTGATCGGTAGGGCGGGATGCGTCTGGTATGGCTTCATCAACTCCTGTTTGGGTATCGTGTCTCTGATCTCCCTGGCAGTGCTGTCCTATGAGCGTTGCTGTACCATGCTGTGTCGGATGCAGGCGGATGGTACTGACTTCGGTACAGCGGTGGCCGGAGTGTGTTTCTCCTGGGTATGCGCCCTGGCCTGGACACTGCCCCCGCTGCTGGGCTGGAGCAGCTATGGCCCTGAGGGACCAGGAACCACCTGTTCAGTGGACTGGAGGACCCAGACACCCAACAACATCTCCTACATCGTCTGTCTGTTCACCTTCTGTCTGTTACTGCCTTTCTCTGTCATAATGTACAGCTACGGCAAGCTGCTCAGCGCTATCAAACAGGTGAGCAATGTGAGCACGGCGGTAACCCGTCGTCGTGAGCAACGTGTGCTGGTGATGGTGGTAACCATGGTAACGTGTTACCTGTTGTGTTGGCTGCCGTACGGTGTAGCGGCCCTGCTGTCGACCTTTGGCCCTCGCAACCTTTTGACCCCTGAGGTCACCATAGTCCCCTCTCTGCTGGCCAAGACATCTACAGTCATCAACCCTGTTATATACATCTATATgaacagacagttctacaGGTGTTTCAAGGCTTTGCTAAGATGTTCTACTCCTGACCGAAGCTCCAGTTTGAAGGCGTCGTCACCGGCGACCAAAACTCTCGGGACCGTTCGCAATGGAAACGGACACGGCGTGCCGGTTGTTTTGGCGTCAGTAGGCCCTCCCACTCCGACTGACTCTGCCAACAGTTCCTTAGTGGTAGCGGATAACCTGCCACCGTCACCTCCCAAAATCCCTCCCCCGGTCCAAACCACGCCCCCTCTCCAAATCACTCCCCCGGTCCAAACCACGCCCCCTCTCCAAATCCCTCCCCCGGTCCAAACCACGCCCACTGCCACTCCCAAACCAAGACTGACCCTCGTAGCTCACTACAATGGATAAAGAGAGAAAGGCTTTGTGTTCCCACGACATGATGTACGTTAAGAGTAAGAAGGAGATATGTCATGGTAAGATGGAGGTCTCTCTGAGTAGTAGTCATTTGAAGCTGTGCAGTAGGTGGTTTTGTTCTTATCAATGTGAATGATCAGATCTGTTAGAGGTGAGGATAAAGTCCCcaggagtcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactggcatgcaTATACACAGTAACCAGTGGAATTATTTGTAAATGAATTGTTGATTAGATCAATGATGgtgaaaatgtttattttgagCACAAAATTATTTCTCTGATGGCTCAGGTCAGGAACATTGTTccagggtaagctgatcctagatctgtggcgATGAGCAACTTCAACCTGAAGTAGTCTCTCTAGACAGATGGGTTGCCTCCCACAATGTACCAATGTTCAAGCTTAACATGCCTGTTTGTATACAACATCAGTTTGACATAGAGGAAAGGGCCATTCGGCTTTCTtacaaatctaatcaaatcaaattgtatttgtcacatgcactgaatacaacaggtgtaaaccttacagtgaaatgcttacttacaagcccttaaccaacaatgcagttttgacaccgcctggtatagaggtcctgggtggccaCAGTCACTGCCTTATCCGCTTGTTGCCATACTGTAAACATCCCCCAGACACAAAATGGTAGCTAGCAAAATGGAGTTCAGGGAGTTTTTTTTAATGCGGGCATTTTGCAAGGGGCTAGTTTGCATCAACTACCTTCACTAAAACCACTGCAAATGTTTTGCTTTCGAATCGGGACGTTCTGGCATGTCTGCCTCgtgatttgttgggagagttGTCTGTCTGAAGAGGACCGCCCCCGGATAGTTTTCCTTTTTTTAATTTTCTTGAGGTTTACCAAGAGAATCCGTCATTAATCCCAGTGCTGTTGCTGCCCTTTGTCTGAGATTTCCGAGATTAAACCTGAACGTGAAGGATTAGCATGTTAGCATTTGGTTTCGAGAGTAAGCATGCTAGCAACAAGACAAGCATTAGCGCATTAGCCTGTTTGTATTGGGCTTGAATGGAGAATTAGTATGCCAGCAATGAAACAAGCGTGAGTCTGTTTGTATTAGATTTGAATGGAGACATAGCATGCTAGCAATGACAAAAATAACTATTTGCTTTgggtttgaatgaatgattagcATGCTAGGGGTAGACCTTACAGTCAGAGATGGGGAATCAGCACACCAGCACCTGAGAGGATTTAATTAAAAAACACATTAGCTATGTCACAACAACAAATTACACCAAGCTACAAAAATAGGGCAAGCTTGTTCTTTTATTCACTATTAGCTACATTAATTAATAGTATGTTTTAGCTATGCAGGAACATTTCAGAGAGACTGTTTTTTGGCAGAGAACATATTATTTGATTAGGTTTTTGATTATGTTTTGTTGCCTGAAGAGCAGGATATTCTGTGCATTTAGTTGATATAAGGATTATTGATGGGTTCTCTGACCCTGTTTCCATGCTTCGTACAGAAGCACTGATTGAAGATTTGATACACAAGGGGATTTGATACAGTGTGTTAAGCATTTCATAATAAGATAATTTGAAGTAACATTTTGTGCAATTATAAatgtttatatatactgtatatatatatatatatatcccagaGAGAAGAAGATAAGTCTGTCTGTACAGCCTCTTACAGAGGattggagaagggaagagaagcggggagaggagaagggaagagaagcagggagaggagaagggaagagaagagacgagacaaaggagaatagaagagaggcgaatagaaaaggagaggagaggagagacaaggacaTGTTCTCGCTCCCTATCACCCCTCATCTCTTTCAAATATATTCCTCTCCACTCTTTCTTTCTGCTTCCTCTCTTATTTGAATTCACAGCTGTCAGATTAAACCATGCATTAttaactgagttacagtttaggGAAGAGAATACATGAAATGCCCCATCGGGGCATAAAGGAGATAAtgtagtagatactatagtagATAATATAGTACATAATATAGTAGATAATAAAGTAGATAATAAAGTAGATAATATAGTAGATAATAAAGT

Function

NR:

description
PREDICTED: pinopsin-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036943808.1 True 3719 mRNA 0.46 5 14394884 14406212
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Neighbor

gene id symbol gene type direction distance location
LOC110489643 LOC106590492 coding downstream 49464 14337050 ~ 14345420 (-)
LOC110489642 LOC106590491 coding downstream 59079 14324774 ~ 14335805 (-)
LOC110489639 LOC106590487 coding downstream 98484 14274348 ~ 14296400 (-)
apoob LOC106590488 coding downstream 130536 14256332 ~ 14264348 (-)
LOC110489636 LOC106590485 coding downstream 147750 14234415 ~ 14247134 (-)
LOC110489646 LOC105021982 coding upstream 6622 14412828 ~ 14435607 (-)
LOC100653457 LOC106579454 coding upstream 29910 14436122 ~ 14453602 (-)
LOC118938790 LOC106596271 coding upstream 54041 14460253 ~ 14461905 (-)
LOC118938789 LOC106596271 coding upstream 70074 14476286 ~ 14478272 (-)
LOC110489648 sh3k1 coding upstream 102215 14508427 ~ 14545697 (-)
G1261250 NA non-coding downstream 22087 14371482 ~ 14372797 (-)
G1261233 NA non-coding downstream 30014 14364566 ~ 14364870 (-)
G1261226 NA non-coding downstream 30544 14363326 ~ 14364340 (-)
G1261141 eif2s3 non-coding downstream 87145 14306962 ~ 14307739 (-)
G1261189 NA non-coding downstream 91598 14265027 ~ 14303286 (-)
G1261237 LOC106596271 non-coding upstream 53595 14459807 ~ 14478227 (-)
G1261239 NA non-coding upstream 93002 14499214 ~ 14500667 (-)
G1261243 NA non-coding upstream 118269 14524481 ~ 14525528 (-)
G1261294 NA non-coding upstream 132890 14539102 ~ 14587634 (-)
qtrt2 qtrt2 non-coding upstream 260446 14666658 ~ 14692839 (-)
msl2b LOC106590518 other downstream 678803 13708013 ~ 13716136 (-)
G1260265 NA other downstream 856676 13537070 ~ 13538208 (-)
G1260226 LOC106590529 other downstream 889723 13462865 ~ 13505161 (-)
G1260199 NA other downstream 1007297 13386389 ~ 13387587 (-)
G1261562 NA other upstream 671498 15077710 ~ 15080745 (-)

Expression

LOC110490924(LOC106590497) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.6.
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LOC110490924(LOC106590497) Expression in each Bioproject

Bar chart with 14 bars.
LOC110490924(LOC106590497) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20.
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Co-expression Network