Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110489646 |
| gene name | LOC105021982 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048579.1 |
| NCBI id | CM023233.2 |
| chromosome length | 81569517 |
| location | 14412828 ~ 14435607 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| activated CDC42 kinase 1-like, partial |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036943809.1 | False | 5102 | mRNA | 0.50 | 19 | 14412834 | 14435607 |
| XM_036943810.1 | False | 5099 | mRNA | 0.50 | 19 | 14412834 | 14435607 |
| XM_036943811.1 | False | 5087 | mRNA | 0.50 | 19 | 14412834 | 14435607 |
| TU1441075 | False | 2585 | TUCP | 0.44 | 3 | 14412828 | 14417118 |
| TU1441076 | False | 2472 | TUCP | 0.44 | 4 | 14412828 | 14417118 |
| TU1441078 | False | 2120 | TUCP | 0.45 | 4 | 14412828 | 14417118 |
| TU1441079 | False | 2233 | TUCP | 0.44 | 4 | 14412828 | 14417118 |
| TU1441080 | False | 2120 | TUCP | 0.45 | 5 | 14412828 | 14417118 |
| TU1441081 | False | 2472 | TUCP | 0.44 | 4 | 14412828 | 14417118 |
| TU1441084 | False | 2233 | TUCP | 0.44 | 4 | 14412828 | 14417118 |
| TU1441085 | False | 2120 | TUCP | 0.45 | 5 | 14412828 | 14417118 |
| TU1441086 | False | 2346 | TUCP | 0.44 | 5 | 14412828 | 14417118 |
| TU1441087 | False | 2359 | TUCP | 0.44 | 5 | 14412828 | 14417118 |
| TU1441088 | False | 2246 | TUCP | 0.44 | 5 | 14412828 | 14417118 |
| TU1441100 | True | 868 | TUCP | 0.55 | 7 | 14424147 | 14435586 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110490924 | LOC106590497 | coding | downstream | 6622 | 14394884 ~ 14406212 (-) |
| LOC110489643 | LOC106590492 | coding | downstream | 67414 | 14337050 ~ 14345420 (-) |
| LOC110489642 | LOC106590491 | coding | downstream | 77029 | 14324774 ~ 14335805 (-) |
| LOC110489639 | LOC106590487 | coding | downstream | 116434 | 14274348 ~ 14296400 (-) |
| apoob | LOC106590488 | coding | downstream | 148486 | 14256332 ~ 14264348 (-) |
| LOC100653457 | LOC106579454 | coding | upstream | 515 | 14436122 ~ 14453602 (-) |
| LOC118938790 | LOC106596271 | coding | upstream | 24646 | 14460253 ~ 14461905 (-) |
| LOC118938789 | LOC106596271 | coding | upstream | 40679 | 14476286 ~ 14478272 (-) |
| LOC110489648 | sh3k1 | coding | upstream | 72820 | 14508427 ~ 14545697 (-) |
| qtrt2 | qtrt2 | coding | upstream | 232942 | 14666658 ~ 14692839 (-) |
| G1261250 | NA | non-coding | downstream | 40037 | 14371482 ~ 14372797 (-) |
| G1261233 | NA | non-coding | downstream | 47964 | 14364566 ~ 14364870 (-) |
| G1261226 | NA | non-coding | downstream | 48494 | 14363326 ~ 14364340 (-) |
| G1261141 | eif2s3 | non-coding | downstream | 105095 | 14306962 ~ 14307739 (-) |
| G1261189 | NA | non-coding | downstream | 109548 | 14265027 ~ 14303286 (-) |
| G1261237 | LOC106596271 | non-coding | upstream | 24200 | 14459807 ~ 14478227 (-) |
| G1261239 | NA | non-coding | upstream | 63607 | 14499214 ~ 14500667 (-) |
| G1261243 | NA | non-coding | upstream | 88874 | 14524481 ~ 14525528 (-) |
| G1261294 | NA | non-coding | upstream | 103495 | 14539102 ~ 14587634 (-) |
| msl2b | LOC106590518 | other | downstream | 696753 | 13708013 ~ 13716136 (-) |
| G1260265 | NA | other | downstream | 874626 | 13537070 ~ 13538208 (-) |
| G1260226 | LOC106590529 | other | downstream | 907673 | 13462865 ~ 13505161 (-) |
| G1260199 | NA | other | downstream | 1025247 | 13386389 ~ 13387587 (-) |
| G1261562 | NA | other | upstream | 642103 | 15077710 ~ 15080745 (-) |
| G1261529 | rpl21 | other | upstream | 662433 | 15096280 ~ 15098716 (-) |
