LOC110489677 (LOC106579446)


Basic Information

Item Value
gene id LOC110489677
gene name LOC106579446
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 14760625 ~ 14779704 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562439.2
ATCTACATATTTGACACCGAAGTGAGCTTGAGCCATAATGGAAGCAGTGTTGTGAGTCCCGAGTCTCGCGATCTGCAAAACTCGGATTGAATGAAGTCAGCTGATCATTTGCTGTCGTATCGCCACTCACATCTTCCCTAGGCAGAGGATCAAGACGCTGGACTGTTTAATTTCTGAAGatCTAGCCTGTCAGGATGGACCTGTCCAAGCTGCCTAAGATCCgggatgaggagaaagagagcgagtttGGATACGTCCATGGAGTCTCCGGCCCAGTTGTGACGGCCACTGCCATGGCGGGAGCGGCCATGTATGAGCTGGTGAGAGTGGGCCACAGTGAGCTGGTGGGAGAGATCATCAGGCTGGAGGGAGACATGGCCACCATCCAGGTTTACGAGGAGACATCGGGTGTATCCGTTGGGGACCCGGTGCTGCGGACAGGGAAGCCTCTGTCAGTGGAGCTGGGCCCAGGCATCATGGGCTCCATCTTCGATGGTATCCAGCGCCCCCTGAAGGACATCAATGACCTAACACAGAGCATCTACATCCCCCGCGGAGTCAATATCGGAGCCCTCAACCGAGACCTGAAATGGGAGTTCTCCCCTGTCAAGAGCTTACGGgTGGGCAGTCACATCACTGGGGGTGATATCTACGGGATGGTGTTTGAGAACTCCCTCATCAAGCACAAGATCATGCTGCccccgaggaacagaggaaccGTCACCTATGTGGCTCCCCCCGGAAACTATGACGTCTCGgacgTGGTGTTGGAGCTGGAGTTTGAGGGTATGAAGGAGAAGTTCACCATGATCCAGGTCTGGCCAGTGCGACAGATTCGTCCGGTCACAGAGAAGCTACCGGCCAATCACCCACTGCTGACCGGACAGAGAGTACTGGACGCCCTCTTCCCgtgTGTCCAGGGAGGAACCACAGCCATCCCCGGAGCCTTTGGCTGTGGTAAAACTgtcatctcccagtccctgtcaaaGTACTCCAACAGTGATGTCATCGTCTACGTAGGCTGCGGGGAGCGAGGGAACGAGATGTCAGAAGTTCTGCGAGATTTCCCCGAGCTGACCATGGAGGTGGATGGGAAGActgagagcatcatgaagagaACAGCGCTGGTGGCCAACACCTCCAACATGCCTGTGGCTGCTAGAGAGGCCTCTATCTACACAGggaTTACGCTGTCTGAGTACTTCAGGGACATGGGCTACAATGTTAGCATGATGGCTGACTCCACCTCTCGATGGGCCGAGGCTCTCAGGGAGATCTCTGGTCGACTGGCTGAGATGCCCGCTGACAGTGGTTACCCAGCCTACTTGGGTGCCCGTCTGGCGTCATTCTACGAGCGTGCCGGCAGGGTGAAGTGTCTAGgcaacccagagagagagggcagcgtCAGCATTGTGGGGGCTgtgtctccccctggtggtgacTTCTCTGATCCTGTGACATCAGCTACCCTGGGTATCGTGCAGgtgttctggggtctggataaGAAGCTGGCCCAGAGGAAGCACTTCCCGTCAGTCAACTGGCTGATCAGCTACAGTAAGTACACGCGGGCGCTGGACGAGTACTACGACAAGCACTTCCCTGAGTTCGTCCCGCTGCGCACCAAGGCCAAGGAGATcctgcaggaggaggaggacctggctGAGATCGTACAGCTGGTCGGCAAGgcATCGCTGGCAGAAACTGATAAGATCACCCTGGAGGTGGCCAAGCTCCTCAAGGATGACTTCCTGCAACAGAATGGTTACACCCCCTACGACAGGTTTTGTCCCTTCTATAAGACGGTAGGCATCCTGTCCAATATCATTGCGTTCTACGACATGGCGAGGCACGCGGTGGAGACCACAGCTCAGAGCGACAACAAGATCACCTGGTCCATGATCCGAGAACACCTGGGAGAGATCCTCTACAGACTCAGCTCCATGAAGTTCAAAGACccagtgaaggagggagagacccAGATCAAGTCTGACTACGCCCAGCTGCTGGAGGACATGCAGAACTCCTTTCGCAGCTTGGAGGACTGAGCCTTCACCCTGGACCTTTCACCCCGGACCTTTCACCCCTGACCCCTCACCTGTGACCCCAGGGACAGTGCAtgtctgtcacccccccccccccccccccctctctctctgcagccacCTCCACTGCGGCCTCACATTCCACTGCCTTGTGTTTACACCCAACCTCCTGCCATCAGTTTACTCAACGTGTGAATGTGTATGGGCAAAAAGAGAACAAAATGTACTGTATTCTTGTATTCTGTTTCCTCACACATTCTAAATACCCCAGTGTATTTGCCCCAACATGGTCAAAGATCTGCCCCGACACCTTAATGTGTGTATgtttacatgtctgtgtgtgagaccCCTGCATTGCCCCTCCCTTCCCCCTGTTTGTTTTGGACATGGTCTCTGGCCCTAGCTGTGTACCTGAAGACTTCCCCTCTATCTGTACAGAATATTGATGATTAACATCAAATACTTAATAAGCAGAGTGACTCTATATTTGTTGCAGGTGTCTGACAAGGACGACGTGTGGTCTGGTTGTTGTTCATATTTAGTGATTTATGCTGTGTAGTCTTGTGTACttgctgtacgtgtgtgtgtgagagagaggggggctctCTCGCCCTGTCCTTTCTACTGCTCGTGGAACAAGTCCCAAAGAATAAAAGGCAACAAAACAAAA

Function

NR:

description
V-type proton ATPase catalytic subunit A-like

GO: NA

KEGG:

id description
K02145 ATPeV1A, ATP6A; V-type H+-transporting ATPase subunit A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562439.2 True 2715 mRNA 0.54 15 14760625 14779704

Neighbor

gene id symbol gene type direction distance location
LOC110489679 LOC106590473 coding downstream 1304 14741939 ~ 14759321 (-)
LOC110489680 zdhhc23 coding downstream 19496 14731181 ~ 14741129 (-)
qtrt2 qtrt2 coding downstream 67786 14666658 ~ 14692839 (-)
LOC110489648 sh3k1 coding downstream 214928 14508427 ~ 14545697 (-)
LOC118938789 LOC106596271 coding downstream 282353 14476286 ~ 14478272 (-)
LOC110489675 LOC106590470 coding upstream 28663 14808367 ~ 14858341 (-)
LOC110490927 LOC106590443 coding upstream 140696 14920400 ~ 15017889 (-)
LOC110490926 LOC106590444 coding upstream 238590 14937736 ~ 15024376 (-)
LOC110489670 LOC106590446 coding upstream 301081 15080785 ~ 15088209 (-)
LOC110489668 LOC106590448 coding upstream 312057 15091761 ~ 15096036 (-)
G1261390 ccdc191 non-coding downstream 49163 14711186 ~ 14711462 (-)
G1261384 ccdc191 non-coding downstream 57826 14702270 ~ 14702799 (-)
G1261294 NA non-coding downstream 172991 14539102 ~ 14587634 (-)
G1261365 NA non-coding upstream 17195 14796899 ~ 14797592 (-)
G1261472 NA non-coding upstream 121718 14901422 ~ 14901684 (-)
G1261479 NA non-coding upstream 129356 14909060 ~ 14909970 (-)
G1261237 LOC106596271 other downstream 282398 14459807 ~ 14478227 (-)
LOC110489646 LOC105021982 other downstream 325039 14412828 ~ 14435607 (-)
LOC110489642 LOC106590491 other downstream 424868 14324774 ~ 14335805 (-)
G1261562 NA other upstream 298006 15077710 ~ 15080745 (-)
G1261529 rpl21 other upstream 318336 15096280 ~ 15098716 (-)
G1261602 NA other upstream 409842 15189546 ~ 15189816 (-)
G1261796 NA other upstream 725994 15505698 ~ 15506198 (-)
G1262503 NA other upstream 1026546 15806250 ~ 15807617 (-)

Expression


Co-expression Network