LOC110490926 (LOC106590444)


Basic Information

Item Value
gene id LOC110490926
gene name LOC106590444
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 14937736 ~ 15024376 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564348.2
GCGGTTTCATTGGGTAGGAACTAATCTGACATTGATAGTGTTTGGTCAGACGGTGAGAAGTGTAGCACAGGTGGTCCCATCTTGGCTACATTGTAATCAGAGCGGAGAGGAAAGCAAACCCGTCCATATTACAGCTGCTGTGTCAGGGGTTTCCATGGTGATGGACCCTCCCGGTGGGCGAGACGAGCGGCGGCGTCAGGCGGAGCGTCTTCGAAGGGAGGAGGCGTACTATCACTTCATCAACGATCTGAGCGAGGAAGAGTACCGCCTCATGAGAGACAGCAACCTGCTGGGCACACCTGGTGAAGTGACAGCGGAGGAGCTACGGCAGCGCCTGGACGGGGCAAAGGAGCGTGTGTCATCTCAGCCACGACCTGAACCACGCCCACAAAATACGGAGGccggagaagaggaggggagcagtgGTACTGCTGAGCCGGGAGCAGAGACATCTAATGGCGACTCACTGCTGGAGTGGCTGAACACGTTCCGACGAACCGGGAATGCCACACGGAGCGGCCAGAGCGGCAACCAGACGTGGCGCGCGGTCAGCCGCACCAACCCCAACAGTGGAGAGTTCCGCTTCAGCCTGGAGATCAACATCAACCATGAGCAGCCGGAACCAGGGGAGCACAGTGACACCCCCGACCCCTCAGAGctgtcccctgtcccccctcCATCCACAGCGTCCATACGCACTTCCCCTTCCACTCGCCCCTCACCCTACACCCCTGCCCGGCCCTCCCCCTATCCCTCACCTCGAGCAACCCTGGGCAGGAGGGCTCAAACCCGCCGTACACGCAgtactaccaccacccctcctctgaCTCCTGCACCCTTCACCTCACCCCTGTCCCCCCCTACTGCTCTAAGGAGTACAACAGCCCTCCACCTCCCCCCATTCCCCATCACCCCCCCTACCCTTCAGGATCAAAGCAGCCCTCCACAGCTCCAGTCCCCAAGCGGAGCTTCCTCCcaagaggagaggcaggaggagggagTTGCTACCCTGGACTGCCCCCGTGTAGCGCCCCAGTCTGGCCCACAGGGGGCGTCTGTGGGGCGTGAGCCACACAGCAGCAGGACTCGATCCCGCGGCCGGACCCGCAGGGCTGTGGCAGGAGGTGGGACTTCCTCCCGGTCATCTAGGAGACGTAGCCGCTCCCCTCTTCAGAGAAACCCCGCCCCTAACTCGGCTACCTTATCCCCTAATGGTGGGAGTGGAAATGGTGGCTCTAATAATATCCACACTGCCGAGCCCAGCAATGGAACTGCTTCTGTCTCCATGGAGACTGGTGAAGCCGTGTCAGAGCCGGCTGTAGTATCAGAGCCTGGTCCAGAGgcagaggagcaggagggagaggcACACACGGCCGGGGCGGGGGGCGCCGGAGGGGTACGCCGCCATCCCACCATCATGCTGGACCTGCAGGTGCGTCGCATCCGACCGGGAGAGAACCGGGACCGAGACAGCATCGCCAGCCGTACCCGCTCCCGGGCCCGCGCTGCTGAGAATACCGTCACCTTCGAGAGTGACAGTGGAGGCTTCCGGCGCACCATCTCCCGCTCGGAGCGGGCCGGGATCCGGACCTACGTCAGCACCATCCGGATCCCTCTGAGGAGGATCAGTGAGACGGGCCTGGGGGAGCCCAGCTCCACCGCCCTGCGCTCCATCCTCAGACAGATCATGACCGGCTTCGGAGAGCTCAGCTCCCTCATGGAGACGGAGGCTGACTCTGAGACCACCGGGGGCACGCCAGGTCACCAGGACCCTGCTGGACCCAACGCAAACACCACCACACAGGCCTACCATGGCAACGAAAGTGGAACTGGGGTGGAAGGTCAGGcaggaggggtggagatggagaccGAGGGAGTGGCAGGGGCCGAGGAGGAAGGAGGCCAGGAGAGATTAGTTGGGAGTGACGGCGGTGCCGGTGGAGTCCCTACCCCCAATGAGGGTCGGCCGACGAGCAGGGACACAAACAACCTCGTGGAAAACGGCACACTGCCCATCCTGCGTCTGGCCCACTTCTTTCTGCTCAACGATGAGGAGGACGAGGAGCACCCTCGTGGCCTGACCAAAGAGCAGATCGATAATCTGGCCACGCGCACCTACGGCCAGGCTAGCCTGGAGGGAGAGGCGGGGCGCGCCTGCAGCGTCTGCATTAATGAGTATGCCCAGGGGAATAAGCTGCGCCGCCTGCCCTGCGCCCACGAGTTCCACATCCACTGCATTGACCGCTGGCTCTCTGAAAACAACACCTGCCCCATTTGCAGGCAGCCCATCCTCCCTGTGCACCAGGACTGACCCTGCCCTGACCCTAGACCGCCACCAGCTACACCTTGCCACCTGTTGGCTGAACTGAGCATGCCCGAGCGGAGTGGACGGTGCATGTACATAGCGCTTTAATGTTTTCATTTATCATTGCGCTATccattgaggggggggggggactataaATGCAGAGAATTAACAAAGCTTTATTTTTTTAGAAGTATTTTATTTtcagcacttttttttttttcttcccctccTTGTTTCTGTTTGGCCACTCTGTCATGTTGTCACTGAGGTCCACATGTAAAGATAGGACTTATGCTAATGAGCTACTATAGCCAGCTGCTGCTCCTCTACCTGATGCGCTGTGACATCACCCTGTCACAACCAGACTACAGTAATCAGCCAGACACATCTCTGGACTTGATTTGGTTGAGAACGTGTAAATATGTCACCGCCTCCTGTGTTTTGGGGTTCAGAAGAGAAAGTCCTCAGTCGCATTGCATTTTTAATCAGAAGCAGGAAACAGCCATTTTAAGTTAAAAGCTAATATTGGAATCCTCCATTTTTAAAGCCCCGACATTCCTTTCAAAGTGTCCTCTATGATTTGACATTGTGTGGACAAAGGCTGTCGTGTATCCTGACTTTTGAATGAGTTTTCACTTGGTCAGTGGTCCCAAGGATCCTGTTGTTTGACCACCTGTTCAGTATATTTCAACCTAGCCATCGAACCCCACAGATCCACAGTGGATGTTCAACATTTCATTCCGTTACAGCCTTTGACACTAAAATATTAGTACCCCAAGTCAGAAAGAAACATCTAAAGAAAAAGATGACCAGGAAAGTGTGTGATTTAGCAGCAAGCACTTGTAGTAGAACTTGTCTGTTACAGAGACAGGCCAATAATGTTGATGCTAGACAAGGAGTTGTGCAATaacatggagggaaggaaggactGTTTTTCATagttacattttaaaacattataGTGCTGTTCTTTCTCCCTTGTTTACTCCTTGGCATCAATGATTAGTTCCTCTGTTGGGAAATAGAGTATCTGCTCAGTAGTATTCTGTCCCTCTACCCTCGGCCTCCTAGAGATACCCCAGTAATCAAAAAGTAGTTCATCACCTCCCACTCCTTCAACGTCTGTGTTTTAAAGTCCCAGTTCTGGTAGAACCTGCCTGTCATGGCCTGATTTCCATGTTCACAAACCAGAAAGGAATGAATAGGTGAAAGCAAAATGGTTCCGGCACCACTCAACCATTTTCTATATCTATCCAATCCTTTCAGATCAGTGAACAACAGATTTCTTCCTCCATTAGCCTGGCCTAGATTTCAATTGGCTTTTCCTGCATGCAGTATCGCCATGTTACCACCAGGGGCAGTATTCACCACAATACAACATGGTGAGAACTGGAGGCCAGTGTTATCGGTGTCCAGGTAGGGCAGGGGTTTTCTGTCATTTGAATCCTGACCTTTGTCATGCAGACCCATGAGACAGGGgtgtgataattgggtaatattgcTCTTTGTATACTGCAGAATCTGAGCGTACGTGCATTGTGGAGCTGTGAGTGTGatggataagtgtgtgtgtggtagagctGAAGGAAGTGACAAAACAGAATGTCATATGATTTAGCAGCATTAATCAGTCACCTGAATGTTAATCTAAGACTGAGTGGGAGGGTTTGTGGCCATCGAATTCAGAATTTAGTATTTATTCTGTTCCTATTTAATGAGATCAAAAACATCCTTTGAGATATTGAATACTTATTGTTATGTGATGAGATTAAAACAAACTGTTAAGATTAATGTGTTCTGTTACTGTGTAATATAAATATACAAGGGTTTTCTTCTCTGCTCCTTAACAATGGAATTAAATACAGCTTTGTTATGCCTGGA
>TU1441372
TtcagcacttttttttttttcttcccctccTTGTTTCTGTTTGGCCACTCTGTCATGTTGTCACTGAGGTCCACATGTAAAGATAGGACTTATGCTAATGAGCTACTATAGCCAGCTGCTGCTCCTCTACCTGATGCGCTGTGACATCACCCTGTCACAACCAGACTACAGTAATCAGCCAGACACATCTCTGGACTTGATTTGGTTGAGAACGTGTAAATATGTCACCGCCTCCTGTGTTTTGGGGTTCAGAAGAGAAAGTCCTCAGTCGCATTGCATTTTTAATCAGAAGCAGGAAACAGCCATTTTAAGTTAAAAGCTAATATTGGAATCCTCCATTTTTAAAGCCCCGACATTCCTTTCAAAGTGTCCTCTATGATTTGACATTGTGTGGACAAAGGCTGTCGTGTATCCTGACTTTTGAATGAGTTTTCACTTGGTCAGTGGTCCCAAGGATCCTGTTGTTTGACCACCTGTTCAGTATATTTCAACCTAGCCATCGAACCCCACAGATCCACAGTGGATGTTCAACATTTCATTCCGTTACAGCCTTTGACACTAAAATATTAGTACCCCAAGTCAGAAAGAAACATCTAAAGAAAAAGATGACCAGGAAAGTGTGTGATTTAGCAGCAAGCACTTGTAGTAGAACTTGTCTGTTACAGAGACAGGCCAATAATGTTGATGCTAGACAAGGAGTTGTGCAATaacatggagggaaggaaggactGTTTTTCATagttacattttaaaacattataGTGCTGTTCTTTCTCCCTTGTTTACTCCTTGGCATCAATGATTAGTTCCTCTGTTGGGAAATAGAGTATCTGCTCAGTAGTATTCTGTCCCTCTACCCTCGGCCTCCTAGAGATACCCCAGTAATCAAAAAGTAGTTCATCACCTCCCACTCCTTCAACGTCTGTGTTTTAAAGTCCCAGTTCTGGTAGAACCTGCCTGTCATGGCCTGATTTCCATGTTCACAAACCAGAAAGGAATGAATAGGTGAAAGCAAAATGGTTCCGGCACCACTCAACCATTTTCTATATCTATCCAATCCTTTCAGATCAGTGAACAACAGATTTCTTCCTCCATTAGCCTGGCCTAGATTTCAATTGGCTTTTCCTGCATGCAGTATCGCCATGTTACCACCAGGGGCAGTATTCACCACAATACAACATGGTGAGAACTGGAGGCCAGTGTTATCGGTGTCCAGGTAGGGCAGGGGTTTTCTGTCATTTGAATCCTGACCTTTGTCATGCAGACCCATGAGACAGGGgtgtgataattgggtaatattgcTCTTTGTATACTGCAGAATCTGAGCGTACGTGCATTGTGGAGCTGTGAGTGTGatggataagtgtgtgtgtggtagagctGAAGGAAGTGACAAAACAGAATGTCATATGATTTAGCAGCATTAATCAGTCACCTGAATGTTAATCTAAGACTGAGTGGGAGGGTTTGTGGCCATCGAATTCAGAATTTAGTATTTATTCTGTTCCTATTTAATGAGATCAAAAACATCCTTTGAGATATTGAATACTTATTGTTATGTGATGAGATTAAAACAAACTGTTAAGATTAATGTGTTCTGTTACTGTGTAATATAAATATACAAGGGTTTTCTTCTCTGCTCCTTAACAATGGAATTAAATACAGCTTTGTTATGCCTGGAtaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564348.2 False 4189 mRNA 0.53 4 15018294 15024376
TU1441372 True 1696 lncRNA 0.41 2 14937736 15019974

Neighbor

gene id symbol gene type direction distance location
LOC110490927 LOC106590443 coding downstream 405 14920400 ~ 15017889 (-)
LOC110489675 LOC106590470 coding downstream 159953 14808367 ~ 14858341 (-)
LOC110489677 LOC106579446 coding downstream 238590 14760625 ~ 14779704 (-)
LOC110489679 LOC106590473 coding downstream 258973 14741939 ~ 14759321 (-)
LOC110489680 zdhhc23 coding downstream 277165 14731181 ~ 14741129 (-)
LOC110489670 LOC106590446 coding upstream 56409 15080785 ~ 15088209 (-)
LOC110489668 LOC106590448 coding upstream 67385 15091761 ~ 15096036 (-)
LOC110489663 LOC106590447 coding upstream 84478 15108854 ~ 15137066 (-)
flt3 LOC106590453 coding upstream 126625 15151001 ~ 15161411 (-)
LOC110489662 LOC106579544 coding upstream 170864 15195240 ~ 15270906 (-)
G1261502 NA non-coding downstream 54102 14963936 ~ 14964192 (-)
G1261479 NA non-coding downstream 108324 14909060 ~ 14909970 (-)
G1261472 NA non-coding downstream 116610 14901422 ~ 14901684 (-)
G1261527 NA non-coding upstream 9405 15033781 ~ 15034323 (-)
G1261533 NA non-coding upstream 16940 15041316 ~ 15042626 (-)
G1261562 NA non-coding upstream 56132 15077710 ~ 15080745 (-)
G1261569 NA non-coding upstream 66413 15090789 ~ 15091010 (-)
qtrt2 qtrt2 other downstream 336402 14666658 ~ 14692839 (-)
LOC110489648 sh3k1 other downstream 472818 14508427 ~ 14545697 (-)
G1261237 LOC106596271 other downstream 540067 14459807 ~ 14478227 (-)
LOC110489646 LOC105021982 other downstream 582708 14412828 ~ 14435607 (-)
LOC110489642 LOC106590491 other downstream 682537 14324774 ~ 14335805 (-)
G1261529 rpl21 other upstream 73664 15096280 ~ 15098716 (-)
G1261602 NA other upstream 165170 15189546 ~ 15189816 (-)
G1261796 NA other upstream 481322 15505698 ~ 15506198 (-)
G1262503 NA other upstream 781874 15806250 ~ 15807617 (-)
G1261365 NA non-coding downstream 140144 14796899 ~ 14797592 (-)

Expression


Co-expression Network