LOC110489671 (LOC100195752)


Basic Information

Item Value
gene id LOC110489671
gene name LOC100195752
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 15024817 ~ 15049542 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036943844.1
CGTGGTGCTCTAAACACTTTTCTCCCGTCTCTTTCTGTACAGTCTACATAACGACATTTTACGACAAAGCCGTGCATGGAATTTCTGTTCTCCCCAGTGAGATACCGGTTGGAGAAACGCAGTAGCAAGAGAATACATAGAAGGGTTAGTAATCGTTCCCATACCTGTCCCCTCGTCCCGGATAAGAATCCGGCATCTTCTCTGGTACACATAAACCGAGCGGTTAGATGTGGAAACAGGGCTGAGGAGAGAGCGACGCGAGGGAAGGCAACTAAAAATTCTAACCCGGGTTGTGAAGTAAGTTGCCTCCTAAGCGGCGCTTTAAAAGGAAGCAAAAGATAATTGACCAAAACAACAGAGAAGATGGACTATGATTTCAAAGTGATGCTGACCGGGGAGAGAGAACGTGTAGAGGACCTGTTTGAATATGAGGGATGCAAAGTGGGGAGAGGCACCTACGGCCATGTAtataaagcaaagagaaaagatgGGAAGGATGATAAGGACTACGCCCTCAAGCAGATTGAAGGCACTGGCATCTCCATGTCTGCCTGCAGAGAGATTGCACTACTGCGGGAGCTGAAGCATCCTAATGTGATCTCACTGCAGAAGGTGTTCCTGTCACACGCAGACCGTAAAGTCTGGTTGCTCTTCGACTATGCCGAGCATGACCTCTGGCACATCATAAAGTTCCACAGAGCGTCCAAGGCCAATAAGAAGCCCCTGCAGCTGCCCAGGGGGATGGTCAAGTCCCTGCTTTACCAGATCCTGGATGGCATCCATTACCTTCACGCCAACTGGGTCCTACACAGAGACCTGAAACCTGCCAACATCCTAGTAATGGGGGAGGGGCCAGAGAGGGGTCGAGTAAAGATCGCGGACATGGGCTTTGCCCGCCTCTTTAACTCACCACTGAAGCCGTTAGCAGATCTGGACCCTGTGGTGGTCACCTTCTGGTACAGGGCACCAGAGCTACTGCTAGGTGCCAGGCACTACACCAAAGCCATCGAGAAGGACTGGGAAGACATCAAGAAGATGCCCGAGCACTCCACTCTGATGAAGGACTTCAGAAGGAACACgtatACAAACTGCAGCCTAATAAAATACATGGAGAAACACAAAGTGAAACCAGACAGCAAAGCATTCCACTTGCTCCAGAAGCTGCTGACCATGGACCCGATCCGCAGGATCACGTCTGAGCAGGCCATGCAGGACCCTTACTTCCTGGAGGAACCACTGCCCACCTCAGATGTGTTTGCAGGCTGCCAGATCCCCTACCCAAAGAGGGAGTTCCTGACAGAGGAGGAGCCAGAGGACAAGGCAGAGAAAGTCAGAAATAAGAACCAGCAGCAGCAGGGGAACAACCACACCAATGGGGCGGGGCACACTGGTAACCCTGACAATAGCCATGCCCAGGGCCCGCCCCTAAAGAAGGTGCGAGTGATCCCGCCAGTCACTACCTCAAGTGGCCTCATGACCTCAGACTATCAGCGCTCCAATCCACATGCTGCCTACCAGAACCCCGGACCAAGCACATCACTGCCCCAAAGCAGCATTGGATACTCCTCTACCTCCCAGCAGCCCCCGCAGTACTCACACCAGACCCACCGctactgacccctgacctctacccACCCCTCGCCATGCCCGCTAGGGAGAATGTACTAAGGGAAGTGGGTGTGTCTATGGCAACAGCCCACCGGTCCACCCTCACTGCAGCAGTCCATTAGCCCAGTATGTTAATACAATATACTCATTCTAAAAGAACATGACATAACGCAACAACATCAGCCATGACAGAACATGACATAACGCAACAACATCAGCCATGACAGAACATGACATAACGCAACAACATCAGCCATGACAGAACATGACATAACGCAACAACATCAGCCATGACAGAACATGACATAACGCAACAACATCAGCCATGACAGAACATGACATAACGCAACAACATCAGCCatgacagaacatgacagaacatgACATAACGCAACATCAGCCATGACAGAACATGACATAACGTGACAACATCAGCCATGACAGAACATGACATAACGTGACAACATCAGCCATGACAGAACATGACATAACGCGACAACATCAGCCATGACAGAACATGACATAACGCAACAACATCAGCCATGACAGAACATGACATAACGCAACAACATCAGCCATGACAGAACATGACATAACGCGACAACATCAGCCATGACAGAACATGACTTCAATTCAACCATGACCAACACATGGAGACTAAACCAAGAGAAAGATGGAGAAGGAAGAACAGATGCTGTCAGTTTGTTGTTTCCCTCGTTCCTTCCCATGTGGTTCAAGTTATCGTTGCTGCAAGTTTGTGACCATTACAAAGTTAACCTTCAGAACTGGAACTGAACTACAGCCACAAGACCAACAAACAGAAGGTGGAACCGGGGCTCCCCTCTTCCCTTaccctcctttccttctctccttacCCCTCCACCAATGCTCTACCCCTTTCCAGCCGGATTCCCCTCTTCCCTTaccctcctttccttctctccttacCCCTCCACCAATGCTCTACCCCTTTCCAGCCGGATTCCCCTCTTCCTGTTGAAGCTTTGATGAGACTAAAGCTACCATGtgactgtctctgtccctctgtctgtgtgtcttcccgtctctctgtctttgtgtctgtccgCCCTTCCATGGGCATCTTCGTTGGGGACCGAATTGAGCTGCTGACAGGAGCATTCTGGGAGTTTGTGGGGCCCCGCCCACAGCTCTGGTTGAGGGCTTTAttgagaaaaaacaaacaaaaacaacaaaggaataaaaaaaaaaaagattttagtAGTTTAGAATTTAATCTGTTTtgttttcacacaaaaaaaaaagtggcGAAGTAGTTTCTGTTGTGCTGAGAGAGAGCTGCCGTTTTTATCGCTGTGGGCAAAGCCTTATCTTCCAGATGACAAACCAACACATTGTGTAGAGGATGGCATATGGAACATGCATTTTTACTGTATTGAAATATTTTACATGACGCAAGTATCCTGACAAATAAAGTGGTAATGTTGACA
>XM_036943843.1
AAACACTTTTCTCCCGTCTCTTTCTGTACAGTCTACATAACGACATTTTACGACAAAGCCGTGCATGGAATTTCTGTTCTCCCCAGTGAGATACCGGTTGGAGAAACGCAGTAGCAAGAGAATACATAGAAGGGTTAGTAATCGTTCCCATACCTGTCCCCTCGTCCCGGATAAGAATCCGGCATCTTCTCTGGTACACATAAACCGAGCGGTTAGATGTGGAAACAGGGCTGAGGAGAGAGCGACGCGAGGGAAGGCAACTAAAAATTCTAACCCGGGTTGTGAAGTAAGTTGCCTCCTAAGCGGCGCTTTAAAAGGAAGCAAAAGATAATTGACCAAAACAACAGAGAAGATGGACTATGATTTCAAAGTGATGCTGACCGGGGAGAGAGAACGTGTAGAGGACCTGTTTGAATATGAGGGATGCAAAGTGGGGAGAGGCACCTACGGCCATGTAtataaagcaaagagaaaagatgGGAAGGATGATAAGGACTACGCCCTCAAGCAGATTGAAGGCACTGGCATCTCCATGTCTGCCTGCAGAGAGATTGCACTACTGCGGGAGCTGAAGCATCCTAATGTGATCTCACTGCAGAAGGTGTTCCTGTCACACGCAGACCGTAAAGTCTGGTTGCTCTTCGACTATGCCGAGCATGACCTCTGGCACATCATAAAGTTCCACAGAGCGTCCAAGGCCAATAAGAAGCCCCTGCAGCTGCCCAGGGGGATGGTCAAGTCCCTGCTTTACCAGATCCTGGATGGCATCCATTACCTTCACGCCAACTGGGTCCTACACAGAGACCTGAAACCTGCCAACATCCTAGTAATGGGGGAGGGGCCAGAGAGGGGTCGAGTAAAGATCGCGGACATGGGCTTTGCCCGCCTCTTTAACTCACCACTGAAGCCGTTAGCAGATCTGGACCCTGTGGTGGTCACCTTCTGGTACAGGGCACCAGAGCTACTGCTAGGTGCCAGGCACTACACCAAAGCCATCGACATCTGGGCTATTGGCTGCATCTTTGCCGAGCTGTTGACATCTGAGCCCATCTTCCACTGTCGCCAAGAGGACATCAAGACCAGTAACCCCTACCACCATGACCAGCTGGACCGCATCTTCAACGTCATGGGCTTCCCCGCTGAGAAGGACTGGGAAGACATCAAGAAGATGCCCGAGCACTCCACTCTGATGAAGGACTTCAGAAGGAACACgtatACAAACTGCAGCCTAATAAAATACATGGAGAAACACAAAGTGAAACCAGACAGCAAAGCATTCCACTTGCTCCAGAAGCTGCTGACCATGGACCCGATCCGCAGGATCACGTCTGAGCAGGCCATGCAGGACCCTTACTTCCTGGAGGAACCACTGCCCACCTCAGATGTGTTTGCAGGCTGCCAGATCCCCTACCCAAAGAGGGAGTTCCTGACAGAGGAGGAGCCAGAGGACAAGGCAGAGAAAGTCAGAAATAAGAACCAGCAGCAGCAGGGGAACAACCACACCAATGGGGCGGGGCACACTGGTAACCCTGACAATAGCCATGCCCAGGGCCCGCCCCTAAAGAAGGTGCGAGTGATCCCGCCAGTCACTACCTCAAGTGGCCTCATGACCTCAGACTATCAGCGCTCCAATCCACATGCTGCCTACCAGAACCCCGGACCAAGCACATCACTGCCCCAAAGCAGCATTGGATACTCCTCTACCTCCCAGCAGCCCCCGCAGTACTCACACCAGACCCACCGctactgacccctgacctctacccACCCCTCGCCATGCCCGCTAGGGAGAATGTACTAAGGGAAGTGGGTGTGTCTATGGCAACAGCCCACCGGTCCACCCTCACTGCAGCAGTCCATTAGCCCAGTATGTTAATACAATATACTCATTCTAAAAGAACATGACATAACGCAACAACATCAGCCATGACAGAACATGACATAACGCAACAACATCAGCCATGACAGAACATGACATAACGCAACAACATCAGCCATGACAGAACATGACATAACGCAACAACATCAGCCATGACAGAACATGACATAACGCAACAACATCAGCCATGACAGAACATGACATAACGCAACAACATCAGCCatgacagaacatgacagaacatgACATAACGCAACATCAGCCATGACAGAACATGACATAACGTGACAACATCAGCCATGACAGAACATGACATAACGTGACAACATCAGCCATGACAGAACATGACATAACGCGACAACATCAGCCATGACAGAACATGACATAACGCAACAACATCAGCCATGACAGAACATGACATAACGCAACAACATCAGCCATGACAGAACATGACATAACGCGACAACATCAGCCATGACAGAACATGACTTCAATTCAACCATGACCAACACATGGAGACTAAACCAAGAGAAAGATGGAGAAGGAAGAACAGATGCTGTCAGTTTGTTGTTTCCCTCGTTCCTTCCCATGTGGTTCAAGTTATCGTTGCTGCAAGTTTGTGACCATTACAAAGTTAACCTTCAGAACTGGAACTGAACTACAGCCACAAGACCAACAAACAGAAGGTGGAACCGGGGCTCCCCTCTTCCCTTaccctcctttccttctctccttacCCCTCCACCAATGCTCTACCCCTTTCCAGCCGGATTCCCCTCTTCCCTTaccctcctttccttctctccttacCCCTCCACCAATGCTCTACCCCTTTCCAGCCGGATTCCCCTCTTCCTGTTGAAGCTTTGATGAGACTAAAGCTACCATGtgactgtctctgtccctctgtctgtgtgtcttcccgtctctctgtctttgtgtctgtccgCCCTTCCATGGGCATCTTCGTTGGGGACCGAATTGAGCTGCTGACAGGAGCATTCTGGGAGTTTGTGGGGCCCCGCCCACAGCTCTGGTTGAGGGCTTTAttgagaaaaaacaaacaaaaacaacaaaggaataaaaaaaaaaaagattttagtAGTTTAGAATTTAATCTGTTTtgttttcacacaaaaaaaaaagtggcGAAGTAGTTTCTGTTGTGCTGAGAGAGAGCTGCCGTTTTTATCGCTGTGGGCAAAGCCTTATCTTCCAGATGACAAACCAACACATTGTGTAGAGGATGGCATATGGAACATGCATTTTTACTGTATTGAAATATTTTACATGACGCAAGTATCCTGACAAATAAAGTGGTAATGTTGACA

Function

NR:

description
PREDICTED: cyclin-dependent kinase 8

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0008353 RNA polymerase II CTD heptapeptide repeat kinase activity molecular_function

KEGG:

id description
K02208 CDK8_11; cyclin-dependent kinase 8/11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036943844.1 False 3077 mRNA 0.49 12 15024817 15049542
XM_036943843.1 True 3210 mRNA 0.49 13 15024828 15049542

Neighbor

gene id symbol gene type direction distance location
LOC110489673 LOC106590441 coding upstream 109925 14905377 ~ 14914892 (+)
LOC110489674 LOC106590469 coding upstream 216651 14796848 ~ 14808166 (+)
LOC110489676 LOC106590472 coding upstream 228470 14780843 ~ 14796347 (+)
LOC110489651 ccdc191 coding upstream 293727 14692257 ~ 14731090 (+)
LOC110490825 LOC106590468 coding upstream 412173 14577442 ~ 14612644 (+)
LOC110489669 LOC106590445 coding downstream 743 15050285 ~ 15075129 (+)
rl21 rpl21 coding downstream 46723 15096265 ~ 15098694 (+)
gtf3ab LOC106590449 coding downstream 56475 15106017 ~ 15108849 (+)
LOC110489665 NA coding downstream 87781 15137323 ~ 15140777 (+)
LOC110489664 LOC106590452 coding downstream 93443 15142902 ~ 15147834 (+)
G1260909 NA non-coding upstream 61105 14941269 ~ 14963712 (+)
G1260912 LOC106590443 non-coding upstream 71394 14944679 ~ 14953423 (+)
G1260903 NA non-coding upstream 92203 14932351 ~ 14932614 (+)
G1260898 NA non-coding upstream 102916 14920642 ~ 14921901 (+)
G1260895 NA non-coding upstream 114873 14909147 ~ 14909944 (+)
G1260973 NA non-coding downstream 24270 15073812 ~ 15074521 (+)
G1260954 NA non-coding downstream 30340 15079882 ~ 15080191 (+)
G1260978 NA non-coding downstream 54287 15103829 ~ 15104054 (+)
G1260998 NA non-coding downstream 91810 15141352 ~ 15141897 (+)
G1260946 LOC106590444 other upstream 2764 15020992 ~ 15022053 (+)
G1260745 NA other upstream 356278 14666659 ~ 14668539 (+)
LOC110489644 NA other upstream 661877 14360048 ~ 14362944 (+)
LOC110489635 LOC106590481 other upstream 808888 14186442 ~ 14217437 (+)
LOC110489660 pan3 other downstream 143470 15166247 ~ 15194945 (+)
LOC110489686 LOC106590396 other downstream 647383 15696896 ~ 15706601 (+)
G1261980 NA other downstream 686388 15735930 ~ 15736417 (+)
mcmdc2 mcmdc2 other downstream 843426 15885437 ~ 15895996 (+)
LOC110489737 LOC106590377 other downstream 3810569 18859697 ~ 18866106 (+)

Expression


Co-expression Network