LOC110489669 (LOC106590445)


Basic Information

Item Value
gene id LOC110489669
gene name LOC106590445
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 15050285 ~ 15075129 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036943841.1
TGGATTGTTTAGAGTGGCCAGACCGCCAGGGACACAGATGGCAGCGCGAACAGGAGGAGTATCTAACGGGACATGCTGCCAGATTAATCTATTACATTTCTGACTGCTGGTGTGACAGTGTGAGGCATCACCATGCCTCTGGTGAAGAGGAACATCGACCCGCGCCACCTGTGCCGGGGGGCGTTGCCAGAGGGCTTAGGCAGTGAACTGGAGTGTGTGATGAAcagcaccctctcctccatcatccGCCAGCTCAGCAGcctgaGTAAACATGCGGAGGACATTTTCGGAGAGCTGTTCAATGAGGCCAACACCTTCTACCTGAGAGCCAACTCCCTGCAGGACCGCATCGACCGCCTGGCCGTCAAGGTCACTCAGCTGGACTCCACCGTGGAGGAAGTCTCTCTGCAGGACATCAACATGAAGAAGGCTTTTAAGAGCAGTACCGCCCAGGACCAGCAGGTGGTATCCACGAGGAGCGTTCCCATCCCTGTCAAGGAGATGTACAACCTGAGTAACAAACCTCCACCTCTCAACATCCTCTCCAAATATAGGGATGACCACAAGGAGGGGCTGAAGTTCTACACTGACCCCTCCTACTTCTTTGACCTGTGGAGAGAGAAGATGCTGCGGGACACGGAAGacaagaggaaggagaagaggaagaacaaAGAGCAGAAGCGTTGTGTGGACGGGacgttgcagagggaggtgaagAAGGTGCGTAAGGCTCGGAACCGTCGCCAGGAGTGGAATATGTTGGCCCTGGATAAGGAGCTGAGGCctgaccaccaccacacacactctctccaccGGGGGGCCACCTGCGAGGGATCACTATCCCCTGAGATGAGgGGTCTTGGGCCTGACCACCACCAACGCCACTATCCTCACTCTACCAATCATGCTGGTCACGCCCACACGTACTCCGGCCCGCCTCCCAGTCTCCTGGCTGCTCAGCTGGCTGCTCAGGGAAACGCCACTCTGGACCATGCCTACAGGGGATACAACCTGGGTCGCCCCCACAAtgctccacctcctctccctcccattgaGAACATGAATGGATCCATGTCTCTACGACCTGTGGACTACAGtatgGAGGGATATGGAAATGGctcccctcctcctgctcctctcatGCCATCTGCACAATCTGCCTTTGCCACGCCCCCCGGAGGCCCACTTCCTCTTCCAGGTCTAATGGGATCAGTTGGTGTCTATGCCCTGCCCCCACCGCCAATCGCTGGGTCGCTGGTGGCTCCAACTCCCCCAATGCCTCCGCCCCCTCCTCCAGGCTCCTCCTACTCTACCACTCCCAAGATGTCCTCCGTGCCCCACAATGCCCAGCCTGTTAATGATGCTCGTAGTGATCTGCTGGCTGCCATACGCATGGGTATCCAGTTGAAAAAGGGTCAAGAGCAGCAGGAACAGCAGGCTAAGAGAGAGCCTGTAGGGAACGACGTGGCCACCATCCTCTCCAGACGCATCGCTGTTGAGTACTCCGACTCCGAAGATGACTCAGAGCTGGAAGAGAACGACTGGTccgactaacacacacacatcactcacTCAAAAGCTGAAAAGCACATACATGTGCACGTTcacatccacacaaacaataAACCACTAAATGGT
>XM_036943842.1
AGACCGCCAGGGACACAGATGGCAGCGCGAACAGGAGGAGTATCTAACGGGACATGCTGCCAGATTAATCTATTACATTTCTGACTGCTGGTGAGGGTGTGACAGTGTGAGGCATCACCATGCCTCTGGTGAAGAGGAACATCGACCCGCGCCACCTGTGCCGGGGGGCGTTGCCAGAGGGCTTAGGCAGTGAACTGGAGTGTGTGATGAAcagcaccctctcctccatcatccGCCAGCTCAGCAGcctgaGTAAACATGCGGAGGACATTTTCGGAGAGCTGTTCAATGAGGCCAACACCTTCTACCTGAGAGCCAACTCCCTGCAGGACCGCATCGACCGCCTGGCCGTCAAGGTCACTCAGCTGGACTCCACCGTGGAGGAAGTCTCTCTGCAGGACATCAACATGAAGAAGGCTTTTAAGAGCAGTACCGCCCAGGACCAGCAGGTGGTATCCACGAGGAGCGTTCCCATCCCTGTCAAGGAGATGTACAACCTGAGTAACAAACCTCCACCTCTCAACATCCTCTCCAAATATAGGGATGACCACAAGGAGGGGCTGAAGTTCTACACTGACCCCTCCTACTTCTTTGACCTGTGGAGAGAGAAGATGCTGCGGGACACGGAAGacaagaggaaggagaagaggaagaacaaAGAGCAGAAGCGTTGTGTGGACGGGacgttgcagagggaggtgaagAAGGTGCGTAAGGCTCGGAACCGTCGCCAGGAGTGGAATATGTTGGCCCTGGATAAGGAGCTGAGGCctgaccaccaccacacacactctctccaccGGGGGGCCACCTGCGAGGGATCACTATCCCCTGAGATGAGgGGTCTTGGGCCTGACCACCACCAACGCCACTATCCTCACTCTACCAATCATGCTGGTCACGCCCACACGTACTCCGGCCCGCCTCCCAGTCTCCTGGCTGCTCAGCTGGCTGCTCAGGGAAACGCCACTCTGGACCATGCCTACAGGGGATACAACCTGGGTCGCCCCCACAAtgctccacctcctctccctcccattgaGAACATGAATGGATCCATGTCTCTACGACCTGTGGACTACAGtatgGAGGGATATGGAAATGGctcccctcctcctgctcctctcatGCCATCTGCACAATCTGCCTTTGCCACGCCCCCCGGAGGCCCACTTCCTCTTCCAGGTCTAATGGGATCAGTTGGTGTCTATGCCCTGCCCCCACCGCCAATCGCTGGGTCGCTGGTGGCTCCAACTCCCCCAATGCCTCCGCCCCCTCCTCCAGGCTCCTCCTACTCTACCACTCCCAAGATGTCCTCCGTGCCCCACAATGCCCAGCCTGTTAATGATGCTCGTAGTGATCTGCTGGCTGCCATACGCATGGGTATCCAGTTGAAAAAGGGTCAAGAGCAGCAGGAACAGCAGGCTAAGAGAGAGCCTGTAGGGAACGACGTGGCCACCATCCTCTCCAGACGCATCGCTGTTGAGTACTCCGACTCCGAAGATGACTCAGAGCTGGAAGAGAACGACTGGTccgactaacacacacacatcactcacTCAAAAGCTGAAAAGCACATACATGTGCACGTTcacatccacacaaacaataAACCACTAAATGGT

Function

NR:

description
wiskott-Aldrich syndrome protein family member 3-like

GO:

id name namespace
GO:0030036 actin cytoskeleton organization biological_process
GO:0005856 cytoskeleton cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
K06083 WASF3; WAS protein family, member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036943841.1 False 1638 mRNA 0.56 9 15050285 15075129
XM_036943842.1 True 1625 mRNA 0.56 9 15050304 15075129

Neighbor

gene id symbol gene type direction distance location
LOC110489671 LOC100195752 coding upstream 743 15024817 ~ 15049542 (+)
LOC110489673 LOC106590441 coding upstream 135393 14905377 ~ 14914892 (+)
LOC110489674 LOC106590469 coding upstream 242119 14796848 ~ 14808166 (+)
LOC110489676 LOC106590472 coding upstream 253938 14780843 ~ 14796347 (+)
LOC110489651 ccdc191 coding upstream 319195 14692257 ~ 14731090 (+)
rl21 rpl21 coding downstream 21136 15096265 ~ 15098694 (+)
gtf3ab LOC106590449 coding downstream 30888 15106017 ~ 15108849 (+)
LOC110489665 NA coding downstream 62194 15137323 ~ 15140777 (+)
LOC110489664 LOC106590452 coding downstream 67856 15142902 ~ 15147834 (+)
LOC110489660 pan3 coding downstream 91118 15166247 ~ 15194945 (+)
G1260909 NA non-coding upstream 86573 14941269 ~ 14963712 (+)
G1260912 LOC106590443 non-coding upstream 96862 14944679 ~ 14953423 (+)
G1260903 NA non-coding upstream 117671 14932351 ~ 14932614 (+)
G1260898 NA non-coding upstream 128384 14920642 ~ 14921901 (+)
G1260895 NA non-coding upstream 140341 14909147 ~ 14909944 (+)
G1260954 NA non-coding downstream 4753 15079882 ~ 15080191 (+)
G1260978 NA non-coding downstream 28700 15103829 ~ 15104054 (+)
G1260998 NA non-coding downstream 66223 15141352 ~ 15141897 (+)
G1260946 LOC106590444 other upstream 28232 15020992 ~ 15022053 (+)
G1260745 NA other upstream 381746 14666659 ~ 14668539 (+)
LOC110489644 NA other upstream 687345 14360048 ~ 14362944 (+)
LOC110489635 LOC106590481 other upstream 834356 14186442 ~ 14217437 (+)
LOC110489686 LOC106590396 other downstream 621796 15696896 ~ 15706601 (+)
G1261980 NA other downstream 660801 15735930 ~ 15736417 (+)
mcmdc2 mcmdc2 other downstream 817839 15885437 ~ 15895996 (+)
LOC110489737 LOC106590377 other downstream 3784982 18859697 ~ 18866106 (+)

Expression


Co-expression Network