LOC110489670 (LOC106590446)


Basic Information

Item Value
gene id LOC110489670
gene name LOC106590446
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 15080785 ~ 15088209 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562424.2
ggGCAGTGCGTGCAGACATACGGATAAGTCCTGGTATTGAGCTGTTGCTGCCTCTTCTTCCGGTAGGGGGTAGCCTATTGAACAAACAGGACCCGTCTCCGAGTCTGGCCCGTTTGGGACTCAGAGCAGCAAAGACCCATCCCCCGATGCTACTGCTGCATCTCCATCTGATCCAGGCACCGCACCTGCCGCCAACGTTATCAATTGCGTATCATGGAAATACAGCAAGGACGCACTTTTGCCTAGACCGAACATCAGAGTCTAGACGGGCCAAAATGAGCAACGACTACGAGGCATCAGTCACCCCCAGCTggctgacctctgaccccacTGTCTGGTCCAGCAGCAGAGACGGATTCACAGATAATGCCACTTACCCACCTATGGGCTCCTTCCCCCCACTGCCCCCTCTCCTGGTCAATCCCTGGGACATCTTGCTGTGCTCCTCAGGGACTCTCATCGCCTGTGAAAATGCCCTGGTTGTACTGGTGATCTGGCAGAACCCGGCTCTGCGTGCCCCCATGTTCCTGCTGATCGGCAGCCTGGCCCTGGCTGACCTCCTGGCTGGTCTGGGCCTGGTGCTCCACTTCACCTTGGCCTACCTGCTGAGGTCTGACTCGGCCCAGCTGCTGACTGTTGGTCTGGTGGTGGCCTCTTTCTCAGCCTCCGTCTTCAGCCTGCTGGCCATCACCATAGACCGTTACCTGTCACTCTACTACGCCCTGACCTACAACTCAGAGCGCACTGCCGCCTTCACCTACACCATGCTGGTCCTCCTCTggggcctgtctctctgtctgggcctACTGCCCATCACAGGGGTGAACTGCCTGGCAGAGGAGTCGACGTGCAGCGTGGTGCGCCCCCTGACTAAGAACAACGTGGCGGTGCTGTCCGTATCCTTCCTCCTGCTGTTCGGCCTCATGCTGCAGCTGTACGTGCAGATCTGTAAGATCGTCATGCACCACGCCCACCAGATCGCCTTGCAGCATCACTTCCTGTCCGCCTCGCCCCACTACGTCACAACCAGGAATGGCGTGTCCACGCTGGCCATCATCCTGGGGACGTTTGCCGCCTGCTGGATGCCCTTCACCGTCTACTCACTGGTCGCCGACTACACATACCCACCTCTCTACACCTACGCCACCCTGGTGCCCGCCACCTACAACTCAGTCATCAACCCAGTGATCTATGCCTTCAGGAACCAGGACATCCAGAAGGCTCTGTGGCTGGTGTGTTGTGGCTGTATACCGGCCAGGGTGGCCCACAGGGCCCGGACCCCTAGCCACGTCTGACCCAGACACAGGTCccgggagggaaggagagaggtgccctgggcagagggaggaggcagacaggcagcctGGGCTCAGGCAGGTGGCTGGAAAGGACGGACTGCGTGCATAGTCATTTTAGCCGCTTTTACTGATGTGGGCTTTTTTCCTCAGAAGGATTGAGAGATTATTATTAGATTATTAAAGATTGTGCCACTTTCCGCACATCAGATAaagggcttgtgtgtgtgtgtacaaaaagATAGGATGTCACACGgacagagaaggaggaagagaggaggagaagtggagtGAGGGATGACAGAGGTGGGGCGATTATCAAGATGCATACAAGATGAAGTCGGGCTGAGGGCTCAATCACCTTGTCTCGCTGCTGCACTCTGAACGTGCCTTGAAAGACAGATAACCACGGGAGGCTAAAAATAACCTGGGTGCTCTGTGATCCGCGTGCCGTGTGTCCGACACAGACTCCATGCAAAGAAACAAAGCCGCGGAGGCGGAGAGCGGGAGCCtatttctcttcatctctccctatTTGCCTTTAAAGCCCCCACCCTCGAGCATGTGAGAATGTAGGTTATTATGATGTTCTGCTTGCTTTCCATTCTGAGGTGACAACAGCCTCGGGAAGGAAAGTCCCCAGATACCTGTAGCACGCACCATTAACCCTCCAAATGCCTGTCCAAACGCACCATTAACCCTCCAAATGCCTGTCCAAACGCACCATTAACCCTCCAAATGCCTGTCCAAACGCACCATTAACCCTCCAAATGCCTGTCCAAACGCACCATTAACCCTCCAAATGCCTGTCCAAACGCACCATTAACCCTCCAAATGCCTGTCCAAACGCACCATTAACCCTCCAAATGCCTGTCCAAACGCACCATTAACCCTCCAAATGCCTGTCCAAACGCACCATTAACCCTCCAAATGCCTGTCCAAACGCACCATTAACCCTCCAAATGCCTGTCCAAACGCACCATTAACCCTCCAAATGCCTGTCCAAACGCACCATTAACCCTTAAATACGTCACGCTGCTTGCCAATTTCTCCTGATTCGCTCACACCGAGTCACGATCGAACCCAGGACGTCCACTTTTCTAGCACACGTGATCGCCCTCCTTGACAACGTACCAACCATTTGAGCTATCGAAAAATATGTAAGGCAGTAGCTCCATCGGTGATATTTCACTAGCTGTGGAGTGAGTTTACGGTACACGTTCTTAAGCGCTTCCAGATCCTCATTCTACCCCGTCATATCAGCGCGCAGCAGTAACTACGTGTTAGTTACTTCATGGACCGATATAAATACTCTGTCAGCAATAACAGCCTCTCCCCAGTAACATGACCACCTCCAGCATGATGATATACGACGACAACAACCAACAGCCCTTCTGCGATGCCTAGCAGAGTCCTTATACACCAGGCCCAAACAAGGACTCAACTTCCCAAGACTTGTGCTGTATGTGATTTCTCCAAATGGGAAATCAGATCTTGACTTatgtgttttgtttttgaaaatgtgaatGGGACAGGATACTGACTGCCACTGCCCAGTATTCTGTCATTAGTCATTACAATGTCACTGCCTTTTTTTATTCTGAATCTCCTGCTCTATTCTCTGGCTATGGTCTTCTTCAATATCTTACAATGAATGAAATTGGACTCGGTAAGAAAATATCTTACACGTTTTCAGTTGCATCTGCCTTTGTGAACCTATGACGTGTTTTTGAGTGTTGTAAACCTAAGCGTCTGTGAATAAGGAAAATGTTTCTGTGCATTTGAGTTGCATGgcccctgagtgtgtgtgtgatctgtgtaccatagaaatagaattcattatatttctatggcttgTATGGGGGTTTGTGATCAGCAGCACAGACCTCATGTATATCTGTCTCCATGGGGACAGTGGCTCTGAGGACTTACTTCCAGTGTGACCCTTTGACCTCAGAGGAAATTGTCTGCTTGTCTTCCTATCATTCTGAGAGAAGTGACCTTCTGAGAGAAGTgacaaattccaccacaggaatgaaATAGAGAAGGATATGTTTAAATGAATAGTAGAAGCAAAGATGGTACTGTATGGTGTACATGTGCAACGGCTGACTCTGAGCCGTAGTAAGGGGTTAAGGCAACGCCGTCACGTGACTGATGGAAAAATAACTTATATCGTTATCACAGGTTCTGGTGGCTCTTCACAGACAAACAATAATACCAAGAAAACACTCTCCTTTACCTTTGAAGAATAATCTATTTTGTTATATTTATTGAAAGTCGCTATTTTTTTTTCTCAGGGTTGTCTCGCCTGAATTATGATGTATCCAAAGTATCTTGTATTTTAATGCGCTGTAGAGCCTCTCCTGAATGAATTGGTAAAGAAATGATTGTTTATTTTGTATGGCATTCTGTTGACCAATTAGATTCTGTAAATAGAGCATGCTTATCATTATAGGGGTGTTCTGACATCATGTATGGTGCTACCTGCTGCAGGATCCAAGGGGGACTCAGGTGCACCGTATTAGAATGACATCAAATTTGACCCCCTTTTATTGTAATTTTACAGTCTGTGTACATTTCCATCCCTAGCCCCTTCCCCCCAATCCCAACCCCTTCTTTAGGCAGATCTGCAAAGTCTGGATAGGTCAATGCAGTATGGCATATACTTTACTTAGCAGATTAGCCTGTTGGAGGGTTAGATGGTGCTGTCACAGTACTGCTTACACCTATCCCAAACCTTGAGGATCTGCCAGACCAATGAGCTAAGGGCTAGGGACGGAAATGGAACCGGGCCTACCTTGTTTGATGAATGTTCTCTCATGTACAGTAATGTCAATCTTTCATGATTCACGATGAGCTTTCATAGGTGAAAACAAGGGCTTCACATTATTGAGTAGACAAAGGAACCACTCGTGTGTGGGTTTGACACAGTACTTCTCTGTTAGGAATACATATTCATCTAATGTTAAACTATTATTGTGCAGTGTAATTGCACCGTAAAGTGTCATATTGAACTAAGATGTGGTTGGAGGGATTTCTACTGTGGCCAGTGGTTGGGGTTTCAAGCATTGTGGGTGAATAATGTGGTTTGGGGGGTATGGTACCCCGATCCAGAGCTAAATACAAGTCTTTTAACACCTCTATGGGCTTCAGAATGTGTGGGGCAGGGGACCCTACAGTACAGCATCTTGTGCAGACGTATACTCTGTGTTAAATGTGAAATGCACTTTATTTTTTGGAAGAAaaacaacatacagtggggcaaaaaagtatttagtcagccaccaattgtgcaagttctcccacttaagaagatgagagaggcctgtaattttcatcataggtacacttaaact
>TU1441500
AATAATCTATTTTGTTATATTTATTGAAAGTCGCTATTTTTTTTTCTCAGGGTTGTCTCGCCTGAATTATGATGTATCCAAAGTATCTTGTATTTTAATGCGCTGTAGAGCCTCTCCTGAATGAATTGGTAAAGAAATGATTGTTTATTTTGTATGGCATTCTGTTGACCAATTAGATTCTGTAAATAGAGCATGCTTATCATTATAGGGGTGTTCTGACATCATGTATGGTGCTACCTGCTGCAGGATCCAAGGGGGACTCAGGTGCACCGTATTAGAATGACATCAAATTTGACCCCCTTTTATTGTAATTTTACAGTCTGTGTACATTTCCATCCCTAGCCCCTTCCCCCCAATCCCAACCCCTTCTTTAGGCAGATCTGCAAAGTCTGGATAGGTCAATGCAGTATGGCATATACTTTACTTAGCAGATTAGCCTGTTGGAGGGTTAGATGGTGCTGTCACAGTACTGCTTACACCTATCCCAAACCTTGAGGATCTGCCAGACCAATGAGCTAAGGGCTAGGGACGGAAATGGAACCGGGCCTACCTTGTTTGATGAATGTTCTCTCATGTACAGTAATGTCAATCTTTCATGATTCACGATGAGCTTTCATAGGTGAAAACAAGGGCTTCACATTATTGAGTAGACAAAGGAACCACTCGTGTGTGGGTTTGACACAGTACTTCTCTGTTAGGAATACATATTCATCTAATGTTAAACTATTATTGTGCAGTGTAATTGCACCGTAAAGTGTCATATTGAACTAAGATGTGGTTGGAGGGATTTCTACTGTGGCCAGTGGTTGGGGTTTCAAGCATTGTGGGTGAATAATGTGGTTTGGGGGGTATGGTACCCCGATCCAGAGCTAAATACAAGTCTTTTAACACCTCTATGGGCTTCAGAATGTGTGGGGCAGGGGACCCTACAGTACAGCATCTTGTGCAGACGTATACTCTGTGTTAAATGTGAAATGCACTTTATTTTTTGGAAGAAaaacaacatacagtggggca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562424.2 False 4654 mRNA 0.49 2 15080785 15088209
TU1441500 True 1017 lncRNA 0.41 1 15080877 15081893

Neighbor

gene id symbol gene type direction distance location
LOC110490926 LOC106590444 coding downstream 56409 14937736 ~ 15024376 (-)
LOC110490927 LOC106590443 coding downstream 62896 14920400 ~ 15017889 (-)
LOC110489675 LOC106590470 coding downstream 222444 14808367 ~ 14858341 (-)
LOC110489677 LOC106579446 coding downstream 301081 14760625 ~ 14779704 (-)
LOC110489679 LOC106590473 coding downstream 321464 14741939 ~ 14759321 (-)
LOC110489668 LOC106590448 coding upstream 3552 15091761 ~ 15096036 (-)
LOC110489663 LOC106590447 coding upstream 20645 15108854 ~ 15137066 (-)
flt3 LOC106590453 coding upstream 62792 15151001 ~ 15161411 (-)
LOC110489662 LOC106579544 coding upstream 107031 15195240 ~ 15270906 (-)
LOC110489659 LOC106590434 coding upstream 196162 15284371 ~ 15319070 (-)
G1261562 NA non-coding downstream 40 15077710 ~ 15080745 (-)
G1261533 NA non-coding downstream 38159 15041316 ~ 15042626 (-)
G1261527 NA non-coding downstream 46462 15033781 ~ 15034323 (-)
G1261502 NA non-coding downstream 116593 14963936 ~ 14964192 (-)
G1261569 NA non-coding upstream 2580 15090789 ~ 15091010 (-)
G1261529 rpl21 non-coding upstream 8071 15096280 ~ 15098716 (-)
G1261583 NA non-coding upstream 74337 15162546 ~ 15162748 (-)
G1261601 NA non-coding upstream 100872 15189081 ~ 15189451 (-)
G1261603 NA non-coding upstream 101686 15189895 ~ 15190370 (-)
qtrt2 qtrt2 other downstream 398893 14666658 ~ 14692839 (-)
LOC110489648 sh3k1 other downstream 535309 14508427 ~ 14545697 (-)
G1261237 LOC106596271 other downstream 602558 14459807 ~ 14478227 (-)
LOC110489646 LOC105021982 other downstream 645199 14412828 ~ 14435607 (-)
G1261602 NA other upstream 101337 15189546 ~ 15189816 (-)
G1261796 NA other upstream 417489 15505698 ~ 15506198 (-)
G1262503 NA other upstream 718041 15806250 ~ 15807617 (-)
LOC110489690 LOC106590399 other upstream 740142 15821701 ~ 15845199 (-)

Expression


Co-expression Network