LOC110489663 (LOC106590447)


Basic Information

Item Value
gene id LOC110489663
gene name LOC106590447
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 15108854 ~ 15137066 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036943836.1
ACTGCTGGAACAGAGCAGTGGGCGGGTGCTTCACCGCAAACGGCACGGGGGCGTTTTATGTGCGGCTGCTGCCGTTCGTCTGCGTGTGATCGAGGTCCGGTAATTGTCCCCTCTCCGGGCCAGAGTTCTCTGCACCAAGGAGAAGCCGGAATAGGGTGATGTCTGATTGGCCACTGGGGGGTGGCTGTCCTCTCGGTCACCAGCTCACCCTCTGAGGCTTATGGGATAGGACGCCCCCCTCCCCACCCGCCCGTAACCTCCCGACCTGTAACCCCAGTGACGACTGTGCCAAATACTGCGATTGGAGCCCCGGTCCTGACATGGGCAGCCCCGGCTGGGAGGTGGGTCCGGCAGGGCCGGTGGAGCCCGTGCTGGAGGCCCTGTGTCCAGAGTGTGGTCAGATCCATCGGGCCTGGGAGAACCACCTCTATAACTACCGCCTGGAGGTGGACGATGACCTGGTGTGTCACATCTGCCTGCAGCCCCTGGTCCAGCCCCTAGACACACCCTGCGGACACACCTTCTGTGCCCGCTGCCTCCGCAGCTTCCTCCAGGAACGGGACTTCTGCCCGCTGGACCGGGAGCGGCTACATCTGCAGGTGTGTAGGCGGAGCAGCATCCTGGTACACAAGCTGCTTGACaagctgtctgtgtcctgtccccTGGCCCCGGCCTGCAGCCTCAGCATGCCCCGCTGTGACCTGGAGGCTCACCTCAAACACAGgTGTCCGGGGACTCGGTCTCAGCAGACCAATTTACAGGGCCCACCATGTGATCACGGGGAGGAGGGAGCCATGGTGACCAGCCCACCCAGGTCCCCCCGCTCCCTCCAGACGGAGACAGACCTGCGGGAGGAGAGCTCACCCTCGCCCCCTGGTGGCACCGCCAGCAGCAGTGTTCCCATGTGGATTGATGAGCCTGGACTGGACAACCCTGCCTTTGAGGAAAGCACTGAGGAGGACAGTGTGGTAGGGTTGGAGTGTGTGGTGCCCAGGGTAAAGCGACCCCTCAGTAACCCCTGCATCCACCTCCTCCGTACCGCCAGCTCCGCCTCCTCAGGATGGGACTGCCCCGAGTCCCCGCCCCTCTCCGCAGAAGAAGGTTGTGTGAAGCTGCCGTCCATTCCAGAGGGTGAGATCACCACCATCGAGGTCCACCGCTCCAACCCCTATGTAGAACTTGGCATCAGCATCGTTGGGGGCAACGAGACGCCTCTTATCAACGTGGTGATCCAGGAAGTTTACCGTGACGGGGTCATTGCTCGAGATGGCAGGCTTCTGGCCGGAGACCAGATACTACAGGTCAACAGTGTAGACATCAGCAATGTGCCCCATAACTTTGCCCGCTCCACGTTTGCACGCCCCTGTGCCATGCTACAGCTCACTGTCCTGAGAGAGCGCCGCTGTGCCTCTCGCCCGCCCCCTTTCACCACCCGTTCTGTGCCTCACGCCCCCTGCTCCACCCCAGAGAGCACCCCATCCAGCCCTGCCAGCCTGAGGATCACCCTGCACAAGCGGGACTCGTCAGAGCAGCTGGGCATCAAGCTGGTGCGCAGGACGGACGAGGTGGGGGTGTTTGTGTTAGACCTGCTAGACGGCGGCCTGGCGGCCAAGGACGGGAGGCTGTGTAGTAACGACCGCGTGCTGGCGGTCAATGAACAGGACCTACGCCACGGCACGCCTGAACAGGCTGCTCAGATCATACAGGCCAGCGGTGAGAGAGTTTTTCTACTGATTGGCCGGCCCAGTAAGCCTACCCCTCCACCAAGCTCCACTTCCAACAGAGACCTGTACTGCCATGACCACTTCCTccccaatcaccaccaccaccaccacagcttctcccccagccccagcccagtgCCTACCTGTGCCCACCTGGCTCGCTCCAGCACCCACAGAgacctGTCCCAGTGTGTGACCTGTAAGGAGAAACACATCACTGTTAAGAAGGAGCCTCATGAGTCTCTGGGTATGACCGTGGCCGGGGGGCGGGGCAGCAAGAGTGGCGAGCTGCCCATCTTTGTGACCAGCGTCCAACCACACGGCTGCCTGTCACGTGATGGACGAATCAAACGAGGTGACATCCTCCTGAGTATCAATGGCCAGGACCTGACCTACCTGAGCCACAGTGAGGCGGTGGGCACCCTGAAGGCCAGCGCAGCATCGCCCTCCGTCCAGCTGAGGGCATTGGAGGTCAGCATGGTGGAGGAGCCAGGCCAGGTTCAGAGCCCCGAGGACCAGCTGTttcccccacatcatcacacacacaactcagacTACGACTCCTCCTGGTCCCCTTCTTGGGTCTTGTGGCTCGGCCTGCCCAGctacctTCACAGTAGCCATGAGATTGTTCTGCGTAGAAGTCACCCTGGGAGCTGGGGCTTCAGCATCGTCGGGGGATACGAGGAAAACCATAGCAACCAGGCATTCTTCATCAAGACCATTGTCCTTGGAACGCCTGCATACTACGATGGCCGCCTCAAGTGTGGGGACATGATAGTGGCGGTTAATGGACTGTCTACGGCTGGTATGAGCCACTCAGCCCTGGTACCCATGCTGAAGGAGCAGCGTAGCAGAGTGGCTCTCACCGTGGTCTCCTGGCCTGGCAGCCTGGCATAGCATCATGCCATACTGAAATTACTGTAGACTGGATCTAACCAGGCTATGGCGCCAAACCATACTGAAATTGTTTTAGATTGGACCTACTGTAACCTGGGCCAAATTACAGACTTCATCAAACCAGGCTAGAGGAAACCTTGCCCTATTGAGCAAAATCACTTGATACTAGGGCGGACTGTGTCAGCCCCACAAACAGACTGTGTTCCTATGGTCATGTTATCGGGACTGTATCTGTTCAAGGACAGTACATCGTCTCTGGACTGCAGTTGAATATACCAAGGGTGCGTTCAGGTGGCCGCAACAGATGGAAATTCATTGCATAGAACAGAAGAGTCTCTGCCATGTAATGATTTAGATCAGCTCTAGGCCATGTATTTCTGTCTGAAACGTTGCTAAGGTCATCAGGAGAAAAATGGGATAAAACGTTTTCACCTACTCGCTCCAACTGAATAAACCCAAGGCCTTACTCTGGGGGCCCAAGTCCCCTGGACACAGCGTTACGCCTCATCACCATGACGATCCAGCCATCAGCTCCCTAGGGTTTACTTGTGGATTCTGCCATTTGATAAATATTTTCCACAGAGAGCATTTGGAGTCAGTTCTAACCCACATCTGCCTGGCCCCACACCTTCATACTGAAGGAGGAAAACTCTGCTAGTGGAATCATTTCAGCACCTGGATGTGTTCAGAAGTGGTAATACAGATTGCAAATCCTGATGACTGGGTTCTGTGAATTATTTCTATGAATTTGCTCTGCCGTTTCATTGGGTTATCCCTGTGCTGCGAGGTTTTATGGTCTTTTCACACCACTGGCTCTGGCAAACAGGCTACACTGGGCAGTCTGTGGGTCCGGTAGTGGTACTCCGTCCTACTCTTCCTTTCGgcagggttaatacctgcctggcacCCAAACAAAATCTTTAACAATACCACAAGTTCCATTGGATTCTTTACAAACTATTGGAGTGGTGCATTGCAAGCACACTGATGCAATTTGTTCACCGTCACCAACCCGCCTACAGATTGGCCATTTGTGAACAGGTAGATCTAGTGGCCGCTTGAAAGATAAGGTAGTCAGCGGCTAGAACAGGTGGGACCACTAGCCACTCAGGGCTAGTAAGTGTGAACAGGCACAAGGCAGAGTGGTTTCCTCAGTTTCTGGGATGCCACATGTCCTACTTGTATCCTAATTATTCAACTTCAAGTCTATCAAATAAGCCAGTCAATGTGTTTACCAAATTCACTCAATCACCTccttggagaaaaaaaaaaaaaaaaaaaacctgctggagaagacagattttgggcCCAGTTCTCACACTTCCCAGGATGGACCAAACTTGATAATATGCTTTGAAAGTGAATCATGTGGGACACCATTGGGTATTTGTAAAGTGTCATAGTGCATTACATAACCATTAAAAGACAAGGAGCCA

Function

NR:

description
ligand of Numb protein X 2-like

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10692 LNX1_2; ligand of Numb protein X 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036943836.1 True 4060 mRNA 0.56 12 15108854 15137066

Neighbor

gene id symbol gene type direction distance location
LOC110489668 LOC106590448 coding downstream 12818 15091761 ~ 15096036 (-)
LOC110489670 LOC106590446 coding downstream 20645 15080785 ~ 15088209 (-)
LOC110490926 LOC106590444 coding downstream 84478 14937736 ~ 15024376 (-)
LOC110490927 LOC106590443 coding downstream 90965 14920400 ~ 15017889 (-)
LOC110489675 LOC106590470 coding downstream 250513 14808367 ~ 14858341 (-)
flt3 LOC106590453 coding upstream 13935 15151001 ~ 15161411 (-)
LOC110489662 LOC106579544 coding upstream 58174 15195240 ~ 15270906 (-)
LOC110489659 LOC106590434 coding upstream 147305 15284371 ~ 15319070 (-)
c1qtnf9 LOC106590436 coding upstream 182460 15319526 ~ 15322520 (-)
LOC110489657 LOC106590437 coding upstream 190103 15327169 ~ 15330900 (-)
G1261529 rpl21 non-coding downstream 10138 15096280 ~ 15098716 (-)
G1261569 NA non-coding downstream 17844 15090789 ~ 15091010 (-)
G1261562 NA non-coding downstream 28109 15077710 ~ 15080745 (-)
G1261533 NA non-coding downstream 66228 15041316 ~ 15042626 (-)
G1261583 NA non-coding upstream 25480 15162546 ~ 15162748 (-)
G1261601 NA non-coding upstream 52015 15189081 ~ 15189451 (-)
G1261603 NA non-coding upstream 52829 15189895 ~ 15190370 (-)
G1261604 NA non-coding upstream 53404 15190470 ~ 15190707 (-)
G1261605 NA non-coding upstream 62036 15199102 ~ 15224156 (-)
qtrt2 qtrt2 other downstream 426962 14666658 ~ 14692839 (-)
LOC110489648 sh3k1 other downstream 563378 14508427 ~ 14545697 (-)
G1261237 LOC106596271 other downstream 630627 14459807 ~ 14478227 (-)
G1261602 NA other upstream 52480 15189546 ~ 15189816 (-)
G1261796 NA other upstream 368632 15505698 ~ 15506198 (-)
G1262503 NA other upstream 669184 15806250 ~ 15807617 (-)
LOC110489690 LOC106590399 other upstream 691285 15821701 ~ 15845199 (-)
LOC110490929 LOC106590401 other upstream 852220 15938237 ~ 16035283 (-)

Expression


Co-expression Network