c1qtnf9 (LOC106590436)


Basic Information

Item Value
gene id c1qtnf9
gene name LOC106590436
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 15319526 ~ 15322520 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562410.2
TGTTtaatgagtccaccagatcagaggcagtagggaagaccagggatgttctcttgataagtatgtgaattggaccattttcctttcCTGCTATTTATTCAAAAtttaacaagtacttttgggtacattattttctttaggaatgtagtgaagtaaaagtaaaagttgtccaaaatatcaatactaaagtaaagtacagataccccaaaaaacgaatTAAGTAGTACATTGAGGTTCTTTACACCACTGTTAGAGCCATCTTGTATGAAAGTGACACAAGGATCATTCTGTTCCTGGCCTGATAATGCTTGATTAGACATTTTTTAATATCATTTGTCATGTTTACATTAAGAATTATGTTTATATCTGAAATCTTGTGTGTAGAGAATATGACAAATACATGGATAAAAACTGATTCTGGGGTTAGGGATGGGTGTgtatgttctagaacactaaCCGGAAAGGTCAGAGTTGATGGCAATGGTGTAATTTATGGGGTCAAGTATTTAACAATATTGCTGATGTTGATGTTTCAGATGCAGAAGATTAACACACATACGTTAACATCTCCCCATCCCGAGTGTCCCTTGTCTTGTGTTCTGTTGCTAATGATTTCAGTCAATTCCAGGCCCCTTAACCTTTTAGTTTTAAGACCATTCGGGAGGAGCTAGACAGCCACCACACAGGCAGGCCAGCATTGAAATTCTGCATGAATTGTCTCCCAGCGATCTTAGGCACTGCATAGCAGTCACTACAGACCAAGGTTCGATCCCAGGCGGTTTCACAACCCACAGTGGCCGGGAGTCCcctagggtggcgcacaattggaccagcctCGTACGGATTAGGGGAGGTTTATGGCCtctggggctttacttggctcatcgtgctttagcgactccttgtggcgggccgggcatcCGCTGGTTGCCTTGCTACCATCCCTATGGTAACAGATACTGTATGCTCAGCACAGTCCAAGCTGATCATTACCCTGCCAGAGAATGGGGAATATTCTAGAAGGGGACAGGTGATGTGGAACGGGGAGAGGGCTGGACACAGAATAAGTAACCTAAAATAGCCGTTATCCTTGTCGAACCAATGGGATGCCTGGCTTAGCAGTtggcatggtgatgtcaccaccTTTCAAGTCCTTGGTAAGGTTTGTGTGGCCTTCTTCGGTGTCTTGGCTCTACAAACATTCAGCTGTGTTCATTCTCCTGCGCTcagtttgtatgcatgtgtctgtgaatgtatatgtgtgtgagtgtgtattgaaCTTCATGTGTTGAGCTGGGTTAGCCTCTTCTGTATTGTGCATCTAGTGCTGAGAATACTCAACTGGGCTGCTGTGAAGCATTGGCTCTTGAGGGACAATGGTGTGGATCAAACTCAgagtctctctcttgctccttctGCTGGCTGTGAGATGCGTAGCACTGGAAGAACCCAAGAAGAATGAATGCGTTGGTGGACATCCAGGAATACCAGGAGACCCAGGCCACAATGGAATGCCAGGCCGAGATGGACGAGATGGGTTCAGAGGTGACAAGGGTGATCGCGGTGAAATCGGCATCACAGGACCAACTGGACAGAGTGGCCCCAAAGGAGACAAAGGGGAGCTGGGTACAGCTGGTCTGGCAGGAATTAAGGGCAGACGGGGTGAGAATGGAGAGAAGGGGCCACCGGGGAAAATGGGGCCCCAAGGAGTCTCAGGGCCCATAGGCCTAAAGGGCCAGAAGGGGGAGCTCGGGTTACCAGGAATCCAGGGACCGAAAGGGGATTTGGGGCCTCTGGGACCTGAAGGGCAGAAGGGGGAGATCGGGCTCCAGGGGGACCGAGGCATCCAGGGGCCCTTGGGAACTCCAGGCCGACCAGGACCAAAGGGAAACCTCGGCCCCCCAGGGTTCAAAGGCAACATTGGTTACCGCGGAGAGCGAGGAAATCTGGGCGagacaggggagaagggagagaagggggacacATTCTTCATCCCAAAAAGCGCGTTCTCAGTGGGTCTAACCGAATACACCAAACTCCCACCGGCTAACGCACCGATCAGGTTTGATAAGGTGATTTACAACCGGCAGGACCATTATGACCCACAGACCGGACGGTTCACCTGCGTGGTGGCTGGGGCCTACTACTTTACCTACCACATCACTGTGTTCTCCCGTAATGTAAAAGTAGCATTAGTGAGAAACGGGGTGAAGGTGATCCACACCATGGATAACTACCAGAGCAGTGAGGACCAGGCGGCAGGCGGGACTGTGTTGCACCTGGAGAAAGGGGACAAGGTGTGGCTGCAGGTGGCTGGAGGAGAGCTCTTCAACGGGCTGTTtgctgatgaagatgatgatacAACCTTCTCTGGGTTCCTTCTCTTTGGTACAGAATAGGGGTTAGGTCCACATGGCTCAGTGAAGTAACACGGGAAAGTTACAATACTTTCTTACCGCCTGTTACATATGACGTTAATATGACTTTAATACGAAGTTAAGATGACTTTAATATGTTGTTCACATGACTTTAATATGACTTTAATACGAAGTTAAGATGAGTTAATAGCCTATCGTATACAGTCATTTTAGGCAATGACAAAAGCATTGTTTAAATGGTTTGTTAtcaaatatgaacataaacgaaACAACAATTTGTGTGTAATATTTTGATGCTGCAACTGATTTTGCCTATCATTTAAGATCATCTCTCTGATAACTCCGCAAACTATGACAGATTTCCTGTGACATGTGTTCTTGTATCTTGTTTGATTTCAATAAAATGTCATACAC

Function

NR:

description
complement C1q and tumor necrosis factor-related protein 9A-like

GO: NA

KEGG:

id description
K24213 C1QTNF9; complement C1q and tumor necrosis factor-related protein 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562410.2 True 2792 mRNA 0.47 3 15319526 15322520

Neighbor

gene id symbol gene type direction distance location
LOC110489659 LOC106590434 coding downstream 456 15284371 ~ 15319070 (-)
LOC110489662 LOC106579544 coding downstream 48620 15195240 ~ 15270906 (-)
flt3 LOC106590453 coding downstream 158115 15151001 ~ 15161411 (-)
LOC110489663 LOC106590447 coding downstream 182460 15108854 ~ 15137066 (-)
LOC110489668 LOC106590448 coding downstream 223490 15091761 ~ 15096036 (-)
LOC110489657 LOC106590437 coding upstream 4649 15327169 ~ 15330900 (-)
LOC110489656 abhd10 coding upstream 13427 15334691 ~ 15521397 (-)
LOC110489683 LOC106590393 coding upstream 349517 15672037 ~ 15696647 (-)
LOC110489684 LOC106590394 coding upstream 384422 15706942 ~ 15735376 (-)
trnay-gua-4 NA coding upstream 426709 15749229 ~ 15749314 (-)
G1261629 NA non-coding downstream 43725 15275495 ~ 15275801 (-)
G1261628 NA non-coding downstream 44719 15274489 ~ 15274807 (-)
G1261615 NA non-coding downstream 73798 15241405 ~ 15245728 (-)
G1261605 NA non-coding downstream 95370 15199102 ~ 15224156 (-)
G1261604 NA non-coding downstream 128819 15190470 ~ 15190707 (-)
G1261657 NA non-coding upstream 11295 15333815 ~ 15348445 (-)
G1261672 NA non-coding upstream 40955 15363475 ~ 15365157 (-)
G1261674 NA non-coding upstream 43626 15366146 ~ 15366400 (-)
G1261676 NA non-coding upstream 45247 15367767 ~ 15368000 (-)
G1261602 NA other downstream 129710 15189546 ~ 15189816 (-)
G1261529 rpl21 other downstream 220810 15096280 ~ 15098716 (-)
G1261562 NA other downstream 240174 15077710 ~ 15080745 (-)
qtrt2 qtrt2 other downstream 637634 14666658 ~ 14692839 (-)
LOC110489648 sh3k1 other downstream 774050 14508427 ~ 14545697 (-)
G1261796 NA other upstream 183178 15505698 ~ 15506198 (-)
G1262503 NA other upstream 483730 15806250 ~ 15807617 (-)
LOC110489690 LOC106590399 other upstream 505831 15821701 ~ 15845199 (-)
LOC110490929 LOC106590401 other upstream 666766 15938237 ~ 16035283 (-)
G1262745 NA other upstream 953489 16276009 ~ 16276552 (-)

Expression


Co-expression Network