LOC110489657 (LOC106590437)


Basic Information

Item Value
gene id LOC110489657
gene name LOC106590437
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 15327169 ~ 15330900 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036943852.1
CGTCTAAATTATTATTTAAGCAGCGcatgatttttgttgttgtgtgcatTAATAATTAAACGGAATTGCTAGTTTATTAAATTATCTAGGAGATATTCGGAAAACTTgcgttagttttttttttactaatctTATACTTTTCCTACATAGTGCATGATTGAAATTCATAATCCGACTTCCTAATTTATACGTTTTTTTGGGAGGTGAAAAAAGTTACGATTTTTTTTTGCATTCATGGTAGGCTACACAATCAATGCAATGCGATTGCTTTTCGATGTTATGCTCAGCACGCTCACAGTCTAGACTACCATAGGCTACCTCATGAGAATGTGCGTGGGACGGGTGCCAAGGACCACACCCATTTAAGCTAGCGATCTGGGTCTCTTGGGGGATGTGCTTAGTGTCTGTGCTGTAAGGGACACAAGGGCCATTAGGGAGAAAGCAGAGGAAAGAAAAGTAAACAACAGCAGGTGCAGGCTGCCAGTGCTGTGACTGCTGCAGGGTGTTGGTCAGTGGAGCTGCAAACGTCTGGTCAGTGGGTGTCTGTCTGGCCTGTCTGTTTGGGTGAGCAGGACAGGAGGAGCCATGGCTAACAGGGGACCCAGCTACGGCCTGAGCAAGGAGGTGCAGGAGAAGATAGAGCTGAAGTATGATCTGGACCTGGAGGCCCGGCTGGTGGACTGGATCGTAGCTCAGTGTGGGGGGAACCTGGAGAGACCACAGCCAAGCAGACAGAACTTCCAGACCTGGCTGATGGATGGAACAattCTCTGTAGGCTCATCAATAGCCTGTACCCGCGTGGTAATGAGCCCATCAAGAAGATTCTGGAGACCCAGATGGCCTTTAAGCAGATGGAGAAGATCTCCCAGTTCCTGCAGGCTGCCGAGGCCTACGGAGTACTCACCACAGACATCTTCCAGACCGTGGACCTGTGGGAAGGGCAGGACATGGCTGCGGTGCAGAGAACCTTGATGGCCCTAGGAAGTGTTGCCCTCACCAAGGACGATGGACATTACCGTGGCGACCGAGACTGGTTCCACAAGAAAGCTCAGGGTTACCGGCGGGAGTTCTCTGAGGACCAGCTTCGTCAGGGCCAGAGTCTGATTGGTCTACAGATGGGCAGCAACCGTGGGGCCTCGCAGTCCGGCATGACGGGCTACGGATCGCACCGCCAGATCATGTAGAGACACAAGCCAGCTGCCCAGCCAGCTGCCAGCCACTCCTTAGCCTGGCGGTGTACTCCAGTTACTGGACCTCCAGAAGAGAGCTCCACCACATTCCCGGAACCTCATGAAATGACCCAACCCCTTTTTCCCCTTCCCCAGcaacattcatacatacatacatacacacatttcATTGTTTGTCCCCAACACCCGAACAGGGTGCTCCatataccacaaccacaccatgatTCCTACAGACCTCAGTAGTTTCTGCTTACCCCACACCCACTCTCCAGTCCTCCTTGGTCCTGCTGTCTCCATCCATAtagtcctgctctctccatccatacggtcctgctctctccatccatacggtcctgctctctccatccatacggtcctgctctctccatccatacggtcctgctctctccatccatacgg
>XM_036943851.1
ggcagtaaatgaggctgaattaagtGCTTTGCTGGCAAacaagccaggtgtagcagtgttaaggtgttgggactgctgttggccCTAACAGTGTGTGGGCACCGTTATCGTGCAATTAATGAATTGTTTCGTGTTGTGTTAGCTTTGCTGGCATGGTGTTtaatggctttgctggcatgaatCTAAAACAAATTGGGTGactttgccccaccaagattatCATGCTAATATCACCCCTGGACTTTATGATAATGATGGTCAGCCCACATAGCCTTAAAGCTGATCGTAGGCTCGCCTTGCCTTGCTTTGCCATCTCCTCTTCTTCTCGCTGGCCTGTCGCATTCTGTATCAGAGATCTAGAGGGATCCTCCTCTTGGCGCCGCACATATAAAACCTGTGGCGTGCCACTCCCGGACACTGAGTCCAGAGCCTCACCCACGCATGCGCCGCGGGTTCAGCATCCTCTGCGCTGACCAGCTCAGCGGAATTAACCACACAGCAGCTACCAGACGAACGTTCTCTCCTCTTTTTTCTACAGGTGCAGGCTGCCAGTGCTGTGACTGCTGCAGGGTGTTGGTCAGTGGAGCTGCAAACGTCTGGTCAGTGGGTGTCTGTCTGGCCTGTCTGTTTGGGTGAGCAGGACAGGAGGAGCCATGGCTAACAGGGGACCCAGCTACGGCCTGAGCAAGGAGGTGCAGGAGAAGATAGAGCTGAAGTATGATCTGGACCTGGAGGCCCGGCTGGTGGACTGGATCGTAGCTCAGTGTGGGGGGAACCTGGAGAGACCACAGCCAAGCAGACAGAACTTCCAGACCTGGCTGATGGATGGAACAattCTCTGTAGGCTCATCAATAGCCTGTACCCGCGTGGTAATGAGCCCATCAAGAAGATTCTGGAGACCCAGATGGCCTTTAAGCAGATGGAGAAGATCTCCCAGTTCCTGCAGGCTGCCGAGGCCTACGGAGTACTCACCACAGACATCTTCCAGACCGTGGACCTGTGGGAAGGGCAGGACATGGCTGCGGTGCAGAGAACCTTGATGGCCCTAGGAAGTGTTGCCCTCACCAAGGACGATGGACATTACCGTGGCGACCGAGACTGGTTCCACAAGAAAGCTCAGGGTTACCGGCGGGAGTTCTCTGAGGACCAGCTTCGTCAGGGCCAGAGTCTGATTGGTCTACAGATGGGCAGCAACCGTGGGGCCTCGCAGTCCGGCATGACGGGCTACGGATCGCACCGCCAGATCATGTAGAGACACAAGCCAGCTGCCCAGCCAGCTGCCAGCCACTCCTTAGCCTGGCGGTGTACTCCAGTTACTGGACCTCCAGAAGAGAGCTCCACCACATTCCCGGAACCTCATGAAATGACCCAACCCCTTTTTCCCCTTCCCCAGcaacattcatacatacatacatacacacatttcATTGTTTGTCCCCAACACCCGAACAGGGTGCTCCatataccacaaccacaccatgatTCCTACAGACCTCAGTAGTTTCTGCTTACCCCACACCCACTCTCCAGTCCTCCTTGGTCCTGCTGTCTCCATCCATAtagtcctgctctctccatccatacggtcctgctctctccatccatacggtcctgctctctccatccatacggtcctgctctctccatccatacggtcctgctctctccatccatacgg

Function

NR:

description
transgelin-3-like isoform X2

GO: NA

KEGG:

id description
K20526 TAGLN; transgelin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036943852.1 False 1611 mRNA 0.51 5 15327169 15330341
XM_036943851.1 True 1679 mRNA 0.54 5 15327169 15330900

Neighbor

gene id symbol gene type direction distance location
c1qtnf9 LOC106590436 coding downstream 4649 15319526 ~ 15322520 (-)
LOC110489659 LOC106590434 coding downstream 8099 15284371 ~ 15319070 (-)
LOC110489662 LOC106579544 coding downstream 56263 15195240 ~ 15270906 (-)
flt3 LOC106590453 coding downstream 165758 15151001 ~ 15161411 (-)
LOC110489663 LOC106590447 coding downstream 190103 15108854 ~ 15137066 (-)
LOC110489656 abhd10 coding upstream 5047 15334691 ~ 15521397 (-)
LOC110489683 LOC106590393 coding upstream 341137 15672037 ~ 15696647 (-)
LOC110489684 LOC106590394 coding upstream 376042 15706942 ~ 15735376 (-)
trnay-gua-4 NA coding upstream 418329 15749229 ~ 15749314 (-)
LOC100135941 LOC100135941 coding upstream 430544 15761444 ~ 15762978 (-)
G1261629 NA non-coding downstream 51368 15275495 ~ 15275801 (-)
G1261628 NA non-coding downstream 52362 15274489 ~ 15274807 (-)
G1261615 NA non-coding downstream 81441 15241405 ~ 15245728 (-)
G1261605 NA non-coding downstream 103013 15199102 ~ 15224156 (-)
G1261604 NA non-coding downstream 136462 15190470 ~ 15190707 (-)
G1261657 NA non-coding upstream 2915 15333815 ~ 15348445 (-)
G1261672 NA non-coding upstream 32575 15363475 ~ 15365157 (-)
G1261674 NA non-coding upstream 35246 15366146 ~ 15366400 (-)
G1261676 NA non-coding upstream 36867 15367767 ~ 15368000 (-)
G1261602 NA other downstream 137353 15189546 ~ 15189816 (-)
G1261529 rpl21 other downstream 228453 15096280 ~ 15098716 (-)
G1261562 NA other downstream 247817 15077710 ~ 15080745 (-)
qtrt2 qtrt2 other downstream 645277 14666658 ~ 14692839 (-)
LOC110489648 sh3k1 other downstream 781693 14508427 ~ 14545697 (-)
G1261796 NA other upstream 174798 15505698 ~ 15506198 (-)
G1262503 NA other upstream 475350 15806250 ~ 15807617 (-)
LOC110489690 LOC106590399 other upstream 497451 15821701 ~ 15845199 (-)
LOC110490929 LOC106590401 other upstream 658386 15938237 ~ 16035283 (-)
G1262745 NA other upstream 945109 16276009 ~ 16276552 (-)

Expression


Co-expression Network