LOC110489687 (LOC106590397)


Basic Information

Item Value
gene id LOC110489687
gene name LOC106590397
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 15750789 ~ 15759102 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562455.2
ACACCCGCTCGAGCAGCCAGTTTGGGTGCCACACTATACTCAGTGTGAGGAACAGCTTGAACCGGAGCAATTACCGCGGGCCTACTTTTCAATTTTACTCCGAAATAAGCGGCTTGGGACGTTATAATGCCGAATTAACAATTTCTTATTATTCATTTGACACTTTTAACGTCTTAACGGAGTGAGTGGGTGTGTATCAGAAGAGAAACGTCATGGACAATTTGGAGAAGCAGTTGATTTGTCCCATCTGCCTGGAAACATTTACAAAACCAGTGGTCATTTTACCGTGTCAACACAACCTGTGTAGAAAGTGTGCCAATGATATCTTTCAGGCCTCCAACCCATACCTCCCAACCAGAGGGGGGTCAGTGACCTCCGGTGGCCGTTTCCGGTGCCCGTCCTGCAGGCACGAGGTGGTCCTGGACCGCCATGGGGTCTACGGGCTCCAGAGGAACCTGCTGGTGGAGAACATCATCGACATGTTCAAACAGGAGTCCACCAGCGCCAAGCCAGCGGccccagagaggacagaggagcaggccATGTGCCAAGAGCACAAGGAGGAGAAGATCAACATCTACTGTGTGACCCACAGCGTGCCCACCTGCTCCATGTGCAAGGTGTTTGGAGCCCACCAGGACTGTGAGGTGGCGCCTCTCAAAAGCATGTACCAGACACAGAAGACGGAGTTGACTGACGGGATAGCGATGATGGTGGGGAACAACGACAGGATCCAGGGCATCATCAGTCAGTTAAAGGAGACCTGCCAGACCATAGAGGAGAATGGCAGGAGGCAGAAGTCCCAGCTGTGTGAGAAGTTTGACCATCTGTACgccatcttggaggagaggaagagggacttaAGTTCTAAGGTGGTGGCCGAGCAGGAAGAGAAGCTCAACTACATTCGTGGTCTAACCAAGAAGTACAAAGAGCACCTGGAGCAGAGCTGTAAGACCGTAGAGACAGGCATACAGACCTTGGAGGAACCAGAGATGGCTGTCTTCCTACAGACTGTAAAAGGCCTCCTTAAAAGgactgGGGAGGCGTCGAGTACCTCCCACCTGGAGAAGGTGGAGCAAGGATATGAGGCGATGGATCACTACACCGTTAATTTCTGGAGAGAGGGCAGGGCCCTGCGTAGCATTGACTTCATCTCAGATGACGAAGATGAGTATGAGGAGGTAGATGGGGGAAAGGCAGAGGCTGAAGTAGGAGGTGGAGCCTCAACAGCTGCCCCACTCCCATCCCCCGCCCCTTAACTCAGCCAACCACAGAGCACAGCCAACCATCAGCCATGGCCcaaacagagatggagaggaagtgaGACATCAGACTCCCTCATTTTTTTCTGGTTCATATAGAGTCAATGAACTAAGCAGACCAAACCCAGCTGCTAATGCATTGAAGCCTATGTGAGAGCCACCTCGTTAATCAGACCGGAACTGATCCTTTTTTTTCAGTGGTAAACGGCCTGAGAGGGACATCttaatttatccaccatctttggtcCAGACTCATAGATACTTCCTGCAGGAGTAGGATGAAGTTGCCCCTGGACATTGGTCTAATGTCAGTTTTGAGTTTTCCCTCctcatggttaaggttaggattggggaaaGCTAAGCTGATCCATGATCAGTGCCTATGGGCAACATCTACCTGAAGCACACCTGCACAGGTGATAGATAGAGCCTTCTGACACAAAACTCTCCTGGGACTTCCTCCCAAAGCTGTGGTTGGATGCAGCTGGATGTGGACATGTTTTTTTCCCAATAGGAGTGCATTTCAGGAGTCAGGAAGTTCACTATAGGAAGACTTTTTAGCCTGATTTAAATTTGATCAGTTAAAGAAAAATGCTAACAAGGTAGTTTTTTTGTGGCTAATTTTAGTTTTCCCTCAGACTGCCGTTGTAGAGTTTTGTCTAAGCAGCAGTGTTGTTTCTTTAATGAATTTGGCAAGATGCCACCGTCTGAACTACATCATTAGAGAATATCATCAGCTGAACATCTCAAACAAGAACTTCCAGAAGATTTTTTTGccttttattgttatttttttactgaaaaagtataaaaaaatatatatatttggttACATTATGAATTCacatagtataataatatatacagtaccttcagaaagtattcacacccctttactttttccacattttgttgtcacAAGGTGGGATTCAAATTGATTtcatttttgtcaacgatctacataAAACACTGTAATGTCTATGTGAAAAATTAAATtagaacatttgtaaaatatttatgaaaaatgtatgagtcatgttagaatcaccttggcagcaattacagatcagtctttctgggtaagtctctaagagctttccacacctggattgtacaatatttgctaaTTTAAAAAACTTAAATCTCTgtgaagttggttgttgatcattgctagacagccattttaaagtcttgctatagattttcaagcctatttaagtcagaactgtaactaggccacccagtaacattcaatgttgtcttggtaagcaactccagtgtataattggccttgtgttttaggttattgtcctgataAGAGAATTTtcctcccagtgtctgttggaaagcagactagatcaggtttttctctaggattttctCTGTGCTTAGTTCCATCCTGTTTATTTTTATACCTCCTAAAACTCCCTAGTTCTtgttgatgacaagcatacccataacatgatgcagccaccaccttgcttgaaaatatgaagagtggtactctgtGGTTTTGTTGTGTTCAATTTGCCAACaatataatgctttgtattcaggacataaagtacatttctttgcatatttttttgcagttttactttagtgccttattgcaaacaggatgcatgttttggaatatttgtattctgtacaggcttcctt
>XM_021562454.2
ACCCGCTCGAGCAGCCAGTTTGGGTGCCACACTATACTCAGTGTGAGGAACAGCTTGAACCGGAGCAATTACCGCGGGCCTACTTTTCAATTTTACTCCGAAATAAGCGGCTTGGGACGTTATAATGCCGAATTAACAATTTCTTATTATTCATTTGACACTTTTAACGTCTTAACGGAGTGAGTGGGTGTGTATCAGAAGAGAAACGTCATGGACAATTTGGAGAAGCAGTTGATTTGTCCCATCTGCCTGGAAACATTTACAAAACCAGTGGTCATTTTACCGTGTCAACACAACCTGTGTAGAAAGTGTGCCAATGATATCTTTCAGGCCTCCAACCCATACCTCCCAACCAGAGGGGGGTCAGTGACCTCCGGTGGCCGTTTCCGGTGCCCGTCCTGCAGGCACGAGGTGGTCCTGGACCGCCATGGGGTCTACGGGCTCCAGAGGAACCTGCTGGTGGAGAACATCATCGACATGTTCAAACAGGAGTCCACCAGcAGCGCCAAGCCAGCGGccccagagaggacagaggagcaggccATGTGCCAAGAGCACAAGGAGGAGAAGATCAACATCTACTGTGTGACCCACAGCGTGCCCACCTGCTCCATGTGCAAGGTGTTTGGAGCCCACCAGGACTGTGAGGTGGCGCCTCTCAAAAGCATGTACCAGACACAGAAGACGGAGTTGACTGACGGGATAGCGATGATGGTGGGGAACAACGACAGGATCCAGGGCATCATCAGTCAGTTAAAGGAGACCTGCCAGACCATAGAGGAGAATGGCAGGAGGCAGAAGTCCCAGCTGTGTGAGAAGTTTGACCATCTGTACgccatcttggaggagaggaagagggacttaAGTTCTAAGGTGGTGGCCGAGCAGGAAGAGAAGCTCAACTACATTCGTGGTCTAACCAAGAAGTACAAAGAGCACCTGGAGCAGAGCTGTAAGACCGTAGAGACAGGCATACAGACCTTGGAGGAACCAGAGATGGCTGTCTTCCTACAGACTGTAAAAGGCCTCCTTAAAAGgactgGGGAGGCGTCGAGTACCTCCCACCTGGAGAAGGTGGAGCAAGGATATGAGGCGATGGATCACTACACCGTTAATTTCTGGAGAGAGGGCAGGGCCCTGCGTAGCATTGACTTCATCTCAGATGACGAAGATGAGTATGAGGAGGTAGATGGGGGAAAGGCAGAGGCTGAAGTAGGAGGTGGAGCCTCAACAGCTGCCCCACTCCCATCCCCCGCCCCTTAACTCAGCCAACCACAGAGCACAGCCAACCATCAGCCATGGCCcaaacagagatggagaggaagtgaGACATCAGACTCCCTCATTTTTTTCTGGTTCATATAGAGTCAATGAACTAAGCAGACCAAACCCAGCTGCTAATGCATTGAAGCCTATGTGAGAGCCACCTCGTTAATCAGACCGGAACTGATCCTTTTTTTTCAGTGGTAAACGGCCTGAGAGGGACATCttaatttatccaccatctttggtcCAGACTCATAGATACTTCCTGCAGGAGTAGGATGAAGTTGCCCCTGGACATTGGTCTAATGTCAGTTTTGAGTTTTCCCTCctcatggttaaggttaggattggggaaaGCTAAGCTGATCCATGATCAGTGCCTATGGGCAACATCTACCTGAAGCACACCTGCACAGGTGATAGATAGAGCCTTCTGACACAAAACTCTCCTGGGACTTCCTCCCAAAGCTGTGGTTGGATGCAGCTGGATGTGGACATGTTTTTTTCCCAATAGGAGTGCATTTCAGGAGTCAGGAAGTTCACTATAGGAAGACTTTTTAGCCTGATTTAAATTTGATCAGTTAAAGAAAAATGCTAACAAGGTAGTTTTTTTGTGGCTAATTTTAGTTTTCCCTCAGACTGCCGTTGTAGAGTTTTGTCTAAGCAGCAGTGTTGTTTCTTTAATGAATTTGGCAAGATGCCACCGTCTGAACTACATCATTAGAGAATATCATCAGCTGAACATCTCAAACAAGAACTTCCAGAAGATTTTTTTGccttttattgttatttttttactgaaaaagtataaaaaaatatatatatttggttACATTATGAATTCacatagtataataatatatacagtaccttcagaaagtattcacacccctttactttttccacattttgttgtcacAAGGTGGGATTCAAATTGATTtcatttttgtcaacgatctacataAAACACTGTAATGTCTATGTGAAAAATTAAATtagaacatttgtaaaatatttatgaaaaatgtatgagtcatgttagaatcaccttggcagcaattacagatcagtctttctgggtaagtctctaagagctttccacacctggattgtacaatatttgctaaTTTAAAAAACTTAAATCTCTgtgaagttggttgttgatcattgctagacagccattttaaagtcttgctatagattttcaagcctatttaagtcagaactgtaactaggccacccagtaacattcaatgttgtcttggtaagcaactccagtgtataattggccttgtgttttaggttattgtcctgataAGAGAATTTtcctcccagtgtctgttggaaagcagactagatcaggtttttctctaggattttctCTGTGCTTAGTTCCATCCTGTTTATTTTTATACCTCCTAAAACTCCCTAGTTCTtgttgatgacaagcatacccataacatgatgcagccaccaccttgcttgaaaatatgaagagtggtactctgtGGTTTTGTTGTGTTCAATTTGCCAACaatataatgctttgtattcaggacataaagtacatttctttgcatatttttttgcagttttactttagtgccttattgcaaacaggatgcatgttttggaatatttgtattctgtacaggcttcctt

Function

NR:

description
tripartite motif-containing protein 55-like isoform X1

GO: NA

KEGG:

id description
K10654 TRIM55, MURF2; tripartite motif-containing protein 55

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562455.2 False 2927 mRNA 0.44 8 15750789 15759102
XM_021562454.2 True 2928 mRNA 0.44 8 15750791 15759102

Neighbor

gene id symbol gene type direction distance location
LOC110490928 dnjc5 coding upstream 2889 15740024 ~ 15747900 (+)
LOC110489686 LOC106590396 coding upstream 44239 15696896 ~ 15706601 (+)
LOC110489682 LOC106590392 coding upstream 216009 15532470 ~ 15534780 (+)
LOC110489655 LOC106590438 coding upstream 385029 15345480 ~ 15365760 (+)
LOC110489660 pan3 coding upstream 557739 15166247 ~ 15194945 (+)
LOC110489688 rrs1 coding downstream 47116 15806218 ~ 15807665 (+)
LOC110489689 LOC106590398 coding downstream 56341 15815443 ~ 15819297 (+)
LOC110489691 sgk3 coding downstream 89798 15848900 ~ 15885366 (+)
mcmdc2 mcmdc2 coding downstream 126335 15885437 ~ 15895996 (+)
LOC110489697 LOC106590402 coding downstream 331394 16090496 ~ 16114214 (+)
G1261967 NA non-coding upstream 32775 15717274 ~ 15718014 (+)
G1261941 NA non-coding upstream 76123 15671900 ~ 15674666 (+)
G1261940 NA non-coding upstream 80868 15669548 ~ 15669921 (+)
G1261917 NA non-coding upstream 86023 15664087 ~ 15664766 (+)
G1262013 NA non-coding downstream 12812 15771914 ~ 15772162 (+)
G1262014 NA non-coding downstream 13094 15772196 ~ 15772465 (+)
G1262027 NA non-coding downstream 27779 15786881 ~ 15787081 (+)
G1262034 NA non-coding downstream 40819 15799921 ~ 15800162 (+)
G1262035 NA non-coding downstream 41855 15800957 ~ 15801181 (+)
G1261980 NA other upstream 14372 15735930 ~ 15736417 (+)
G1260946 LOC106590444 other upstream 728736 15020992 ~ 15022053 (+)
LOC110489673 LOC106590441 other upstream 836666 14905377 ~ 14914892 (+)
LOC110489737 LOC106590377 other downstream 3101009 18859697 ~ 18866106 (+)
epb41l3a LOC106590342 other downstream 3915011 19598284 ~ 19680110 (+)
G1267949 pck2 other downstream 5081193 20840295 ~ 20841398 (+)
slc12a7b LOC106590280 other downstream 6027119 21729755 ~ 21794253 (+)

Expression


Co-expression Network