LOC100135941 (LOC100135941)


Basic Information

Item Value
gene id LOC100135941
gene name LOC100135941
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 15761444 ~ 15762978 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124286.1
TTTGAAGAACTCCTTATACACATTTCTTGATCCATCACTCGTGGAAGAGGAAGAGAGTTCTCAACAAATACCTAAAATCCAGGGACACAACGACTCAACTGAAGATCTCGTTGAACCCCTGACATGAAGCTCAATTTCCTCGTCACCACCGTGGTTCTGCTCATTGCTTTCTTACCGCGCTATGAGTGTAGGGCTATCGAGAGCCCTGGCGCTGTCCAGCGCGCCACCGCTCCACATCACGACGCGCAGCAACAGTCTCTTCCCCTCCTGACGCGACATGGAGAGGAATACTACATCCGACTGGGAAACGGGAACCGCAACTCTGTTGCGTCCGCACCTGAAGGCATGTACCCAGAGGGCTCCCCAGCGGTCTACAACAGAGCCTTGCAGCTCCAACTGACGCAGCGTCTTCTACAAGGCAAAGTTGGGAACATCAGCCGGTTCGTCAGCGGCTTCGCGAACCAGCTCGACGACTCGattgagagggggaggaggtccgATGATCCGCCGATATCTCTAGATCTTACGTTCCACATGCTCCGACAGATGATGGAGATGTCCAGAGCTGAACAGTTACAGCAACAAGCCCATAGCAACAGAAAAATGATGGAGATCTTCGGGAAATGAAAATTACATCCATCCATCCGCCAAagatttgtttttacatttagcaCAAAACACACAGTATTCTGTACCATAGTGCTGCTTTTCCATCTTTgtttagaattatttattttatagctTTAACCTGACGGTGGAGACTAAATGGGCTTGTAGGTTACTTGTAATTATGATTGTAGCCTATATCATGCAAGATAAAGTATGTCCTTTGAATTTGTAATAGGCTATTGTTGTTGAAGTTCTACGTCAAAACTGTAGAATATACAcgattctgtctctctttcattaagacaaaaacatatttttttggtAGATCTTATAGGCTTAGGAAATTACGTTTTATTGTATGTTATGTTATTTAAGTTTGTTAATAAACTTATGAGCAACGAGTA

Function

NR:

description
corticotropin releasing factor precursor

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG:

id description
K05256 CRH; corticotropin-releasing hormone

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124286.1 True 1013 mRNA 0.44 2 15761444 15762978

Neighbor

gene id symbol gene type direction distance location
trnay-gua-4 NA coding downstream 12130 15749229 ~ 15749314 (-)
LOC110489684 LOC106590394 coding downstream 26068 15706942 ~ 15735376 (-)
LOC110489683 LOC106590393 coding downstream 64797 15672037 ~ 15696647 (-)
LOC110489656 abhd10 coding downstream 240047 15334691 ~ 15521397 (-)
LOC110489657 LOC106590437 coding downstream 430544 15327169 ~ 15330900 (-)
LOC110489690 LOC106590399 coding upstream 58723 15821701 ~ 15845199 (-)
LOC110489693 NA coding upstream 131490 15894467 ~ 15898010 (-)
LOC110489694 LOC106590412 coding upstream 137502 15900480 ~ 15904342 (-)
LOC110489696 cops5 coding upstream 155417 15918395 ~ 15923805 (-)
LOC110490929 LOC106590401 coding upstream 175259 15938237 ~ 16035283 (-)
G1262413 NA non-coding downstream 130243 15630893 ~ 15631201 (-)
G1261910 NA non-coding downstream 143103 15618093 ~ 15618341 (-)
G1261886 NA non-coding downstream 161342 15599836 ~ 15600102 (-)
G1261871 NA non-coding downstream 176599 15579910 ~ 15584845 (-)
G1262476 NA non-coding upstream 4372 15767350 ~ 15767589 (-)
G1262480 NA non-coding upstream 8857 15771835 ~ 15772052 (-)
G1262489 NA non-coding upstream 19439 15782417 ~ 15782642 (-)
G1262491 NA non-coding upstream 23629 15786607 ~ 15786963 (-)
G1262494 NA non-coding upstream 29277 15792255 ~ 15792968 (-)
G1261796 NA other downstream 255246 15505698 ~ 15506198 (-)
G1261602 NA other downstream 571628 15189546 ~ 15189816 (-)
G1261529 rpl21 other downstream 662728 15096280 ~ 15098716 (-)
G1261562 NA other downstream 682092 15077710 ~ 15080745 (-)
qtrt2 qtrt2 other downstream 1079552 14666658 ~ 14692839 (-)
G1262503 NA other upstream 43272 15806250 ~ 15807617 (-)
G1262745 NA other upstream 513031 16276009 ~ 16276552 (-)
G1263444 NA other upstream 882666 16645644 ~ 16646417 (-)

Expression


Co-expression Network