mcmdc2 (mcmdc2)


Basic Information

Item Value
gene id mcmdc2
gene name mcmdc2
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 15885437 ~ 15895996 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562461.2
CACAGTTCAAATGTTCAAGTCGCGTGATATCTTGACTGTGTGACTAGTCTCTTCAGACAACgctttagctaacgttagtcagTCGGTAACAGAAAATGGAAAACGTTCTCTTACTGAAAGAGTCAATTTTGTCTTTTCTAGACAGAAGTGGAGCTCTTCTTCAACTTGCCGAAGACTGCAAACCATTCAACGACATCCAGCGAAATGAAGCTGTGTATCGGTTCTGTATCCGTGTGAACCCTTCAGACCTAATCGAACTGGATCCTAGATTGGGTGATTGTGTTCTCAATGACCCCCTCAAAGCTACAGCACTGTTTCAATCTGTTTGTTTTCTGTCAATAAAGACACTCTCCCTCATAGAGAAAATCCACACAGAAAGTCAGGTGAATGTGATCCTGAAGTTTACACACCTACCTCCGTTCCCTGAGTACACCTTGGACCTCTGTGAGTTTCCCTGTGGTTATGGCCCCATGAGGCCTGTTGCCATGGAGGGCTTGGCCATCGCGATGACTAGGGTCTCCAAGTACACTCAGGGAGCCAGGTTTCTCTGTTCTGAGGAGGACTGTCCCTGCTCAACAGGGTTCCATCACATCAGAGTGCACGCACCCGGAGCCACTGAGTCAGCCACAGTGAGGAGTGACTTCAGCTGCCTGCTCTGCTCCTCTCACCTCAAAGAGGACATCAAGTTCCGGGTCCTGGGGGACAAGCAGCTTGTAGAGCTGATCCATGTTAAAGCACTGGATGTCCTGAAAGTCCATCCTCCCAGTGCCCTCAGGTACCAGTCTGTCACCCTGTTTCTCAGAGATGAGCTGTGTAACTCCATGAGGATTGGACGTCTGTACAGGGTGCTGGGCATACCGGCCCATGTCCACCAGTGGCCCAACGTCACCTGGAGTGTGGAGGCCAATAGCGTTCAACCGTGGGAGCCTGAATACACGGGCACCATCAGCTCTAACTTCCAGGCCCTGTTGACGGCAACAGCCTGTTCCCCCTGGAGGTTCTCTGCCATTGTGGCTAACACGTTTGGATCCCCTGTGGTTCCCCCGGGCTTGTACAGCACTCTGAAGCTGGGCCTGCTGCTCAGCCTGGTCCAGGGCCGGGAGGACAACCCAGACTCACTGCACTGCCTGGACCTGCTAGCCCTGACGACTGACACACTCATACTGGAAAGGCTGATGACGTACAGCCTGGGTCTGGctggccgtggggtgagacaccCTGCGACAGGGGAGATGTTTGCCTCTCTTTCTCGTGATGAACACGGAGCAGGCACGGCTAACATCCACGCTGGCTCCGCCCTGCTGGCCACTGGGGGCGTCTGCATGCTCGGGGACCTGGGCCACCACAGGAAAGATAAGATGGACGCCCTTCAGTCAGCTCTGGAGAGTCGGACAGTGTCTGTGATCATCCCAGGGAAGAAGTATGGAGAGGATGCTGACCAGCAGATCTCCTTCCCTGTCCAGTGCAGCTTCTGGGCCTTGGCAGACTCCACAGCTCCCTCAAACAAGACCACCAGGACTGACAGTACAGTGCTGGGAACAGTGgacatgGGCTCGGTCCCTGCCCAGTTGGCTGAGGCCTTTGGTCTGGTGATCCTGTGTCGGGAGGCAGGGGGAAAGCAAGCCCTGCTAGCCCAGACGGTGCACACCCTCAGACAGGCAGTGCAGCCCGGAGAGCCCCTCTACCCATCCTGCATGCAGTTCACCACACAGGACTATAAGGAGCTTCTGGCCCACACCCAGAGGATCCAGACAGAGCTGAGCCCCGGGGCAGAGATGATGATACATGGCTATTACATGGCCAGCAGAAGGGTCCGCTCAGACTCGGGCCATGGTGCAAAGGTGTCTGTGGCCTCCATCAAGCTACTGATCTCCCTGGCTGAGGCCCACAGTAAGCTGTGTCTGAGAAGCACAGTGCTGGAGGAGGATGCAGTGATCGCTGTGTTGCTGTGTGAAAACTCCATCACTCTCAGACATGGAGCCTCAGCGCTTGTTATCCCACCCGACGCAGCATTTCCCTGTGACCTGTGTGACCTGGAAGCTCTCCACAGGAGAGACCTTATCCTGGAGCAGCTCCAACAAAGCATCCTGCACTTTGTCTACGCCTACGCACCCGGGGCCACCAGCTACATCACTGAGGAGGAATAGGACCACAGCTAAGTTAAAGGATTTTTCTATATTGAATTGCAATGGTGAAATGAGCTACTCAGAAGAAGAAACGTTCCATAAGCACAAAGCGCTTCAAATTGAGCGTTtctcctctgccaagataatccatccacctgacaggtgcgtCATACCAagtagctgattaaacagcatgattgcTGTAGCCACATATCAGGTTGAGGGAGAgtggaattggcatgctgactgcaggaatgtccaccagagtattgaatgagaatttggcagtacatccaaccggcctcaccgGTGATAAAACTAATTCTGACTGGGTGGGCCTATTCCCTCCCAGGCCAACCCATGGCTACGCACCTGCAGTCAattgaaatccattgattagggtCTAATACATGAACTGTAACATTCATATTTTTCAGTGTAATTCAATGTAGGCAGAAAAAAGATTGCGATTAATGTACcataaaatattttatttcatAACGGGGCAGAATAAAATCTgattaaaacaaacatttaaccTTAAGCAGGGGAGTCAGACCAAGGTTGTGCTTTTTTTGACAGGCAAGAATGGTGAAAATAGGGTGATAGTTTAGGTCTCCAGGGTCATATTTGTGAAGGAGTTCATGCACTGCTTTCCAAACCTTGTGAATTGTCAACGAATAGAAGAAATCAGTTAAATAAATGACCATTGTCTAATAAGATTAGCCATCAACCTACAACTTTCTACCATCGTGGGTTTAGTTACAATGCTGGTAATTCAAATGAATGGCTTTTCAGCAGGGTAAATTAGCAGAAATGTCAGAAAGGGCAtcaattccatttaaaatgaATGGACACCTCTCAACCCAGGAAATAACTCCCCTACTGCAGGCCTAACAATCCTGCATGATGAAATAAGAGTCTCAAACCGTAGTCAGGGATTGCAGGTTTAATGATTGCAGGTAGCCCCTGCCACGAGGTGCACCGCAGATATTGAGCTAAGCAAGATGCTCACGCTTCAACACTCTTAGTTGTGGAAATTGACCCCTTTACTCACTGCATCTATACCATATCGCTGCGTCTACCTATAATGATCAATGCTAATATTGGCAGTTCAGTTAGTCACAGCATCCCAATTTAGTCAGATCAGTAAATAGCAAAAGTGAGAAGTCATCACAACTCCAGTAGAAGACTGAAGGAAACCAGTTGGCTATTTAGCCCTCACACTCACCATAGGGTTGAGATTTAAGTCTTCATATTCCACATACTGGATCATCAAACCCAATCtaggagagaacagtctattagcATGACTATCATTTGATTGTAGTTAGGCAAAATATACAAGCAATTATACTGTAGTTCAGGAAGTCTCTCTCAGCATCCCAATTTAGTCTGATGGGTAAACGGCAAAATGTAGAACTCATCACAACTCCAGTTTCGTGCACATTTGCCGATCAAAGACATGTTGGGCCCTCAGattaaaaataatattttactCACCACAGGGCAAGATCTTCAATATACATCCTGGCCCATTAACTC
>TU1442095
CACAATCATTCATTTACAGAACCAATAAATGGGTGCCCGAGTGTAGACTATTTTTTGTGTAGGCTGGaaaatattttcagtggtatcaGATTGGGTTTATTTTTACACAATTTCATCAGTGACCCCCAAAGATATAGAAAAGGCTTATCACTAAGACAGGTTTTTCCAGATCTGATGGTCTGTTCCTACATGGTGCATTTCATTGCCAGTTAGTAACTGTACCATTACTCACAGTAAATTCTGCTTAGCTAAAAACTAGACATTTGTTTACTTCTAATTGTCTTTATTGGCATGTTTCTTCCAGGATCTCCCTGGCTGAGGCCCACAGTAAGCTGTGTCTGAGAAGCACAGTGCTGGAGGAGGATGCAGTGATCGCTGTGTTGCTGTGTGAAAACTCCATCACTCTCAGACATGGAGCCTCAGCGCTTGTTATCCCACCCGACGCAGCATTTCCCTGTGACCTGTGTGACCTGGAAGCTCTCCACAGGAGAGACCTTATCCTGGAGCAGCTCCAACAAAGCATCCTGCACTTTGTCTACGCCTACGCACCCGGGGCCACCAGCTACATCACTGAGGAGGAATAGGACCACAGCTAAGTTAAAGGATTTTTCTATATTGAATTGCAATGGTGAAATGAGCTACTCAGAAGAAGAAACGTTCCATAAGCACAAAGCGCTTCAAATTGAGCGTTtctcctctgccaagataatccatccacctgacaggtgcgtCATAC
>TU1442100
TCACTGCATCTATACCATATCGCTGCGTCTACCTATAATGATCAATGCTAATATTGGCAGTTCAGTTAGTCACAGCATCCCAATTTAGTCAGATCAGTAAATAGCAAAAGTGAGAAGTCATCACAACTCCAGTAGAAGACTGAAGGAAACCAGTTGGCTATTTAGCCCTCACACTCACCATAGGGTTGAGATTTAAGTCTTCATATTCCACATACTGGATCATCAAACCCAATCtaggagagaacagtctattagcATGACTATCATTTGATTGTAGTTAGGCAAAATATACAAGCAATTATACTGTAGTTCAGGAAGTCTCTCTCAGCATCCCAATTTAGTCTGATGGGTAAACGGCAAAATGTAGAACTCATCACAACTCCAGTTTCGTGCACATTTGCCGATCAAAGACATGTTGGGCCCTCAGattaaaaataatattttactCACCACAGGGCAAGATCTTCAATATACATCCTGGCCCATTAACTCTATGAAAGAACAGAATTATAATTTGATAgataatgtaaaaatatatctCAGAATAATGGTAGTTCAGTTAGTCACACTGTCAGCACCCCAATAATGGTCTGATGGGTAAACGGCAAAAATGATAACTCATCACAACATTAACCAAAGGGTTGTATACTAGTTGGTTAATGCCAGTGGAAACGAGAAGGTATAGGCCTAACTCACCAAAAACAAGATGTAGATTGCGTGTCAAACTCATTGCACGAAGGGCAGAGTGTATGCAGGTTTTCACTGCTCCCTGTACTTGATTGACGAGTTAAGGTCACTCCATCACCTGGTTGTCTAAGCCTTAACTGAAAGGAAAACccaaaacccacagacactaggCTCTCTATGGAATGAGTGACACCCCTGGTGTAGATCTCTTATAGCGTCTTCAGTACCC

Function

symbol description
mcmdc2 Orthologous to human MCMDC2 (minichromosome maintenance domain containing 2).

NR:

description
MCM domain-containing protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562461.2 False 3671 mRNA 0.49 13 15885437 15895536
TU1442095 False 736 TUCP 0.45 2 15892968 15894164
TU1442100 True 916 lncRNA 0.40 2 15895045 15895996

Neighbor

gene id symbol gene type direction distance location
LOC110489691 sgk3 coding upstream 71 15848900 ~ 15885366 (+)
LOC110489689 LOC106590398 coding upstream 66140 15815443 ~ 15819297 (+)
LOC110489688 rrs1 coding upstream 77772 15806218 ~ 15807665 (+)
LOC110489687 LOC106590397 coding upstream 126335 15750789 ~ 15759102 (+)
LOC110490928 dnjc5 coding upstream 137537 15740024 ~ 15747900 (+)
LOC110489697 LOC106590402 coding downstream 194960 16090496 ~ 16114214 (+)
LOC110489699 LOC106590411 coding downstream 224809 16120345 ~ 16125640 (+)
LOC110490826 LOC106590409 coding downstream 288586 16184122 ~ 16187739 (+)
LOC110489703 LOC106590416 coding downstream 334290 16229826 ~ 16311952 (+)
LOC110489708 LOC106590383 coding downstream 568705 16464241 ~ 16493189 (+)
G1262047 LOC106590399 non-coding upstream 59368 15825727 ~ 15826069 (+)
G1262046 NA non-coding upstream 60514 15824472 ~ 15824923 (+)
G1262045 NA non-coding upstream 62247 15822919 ~ 15823190 (+)
G1262044 NA non-coding upstream 63197 15821732 ~ 15822240 (+)
G1262043 NA non-coding upstream 64768 15820256 ~ 15820669 (+)
G1262108 LOC106590401 non-coding downstream 50473 15946009 ~ 15946843 (+)
G1262111 NA non-coding downstream 52447 15947983 ~ 15949078 (+)
G1262122 NA non-coding downstream 65766 15961302 ~ 15969499 (+)
G1262190 LOC105030512 non-coding downstream 185110 16080646 ~ 16080887 (+)
G1262191 NA non-coding downstream 185514 16081050 ~ 16081492 (+)
G1261980 NA other upstream 149020 15735930 ~ 15736417 (+)
LOC110489686 LOC106590396 other upstream 178898 15696896 ~ 15706601 (+)
LOC110489660 pan3 other upstream 690492 15166247 ~ 15194945 (+)
G1260946 LOC106590444 other upstream 863384 15020992 ~ 15022053 (+)
LOC110489673 LOC106590441 other upstream 971314 14905377 ~ 14914892 (+)
LOC110489737 LOC106590377 other downstream 2964575 18859697 ~ 18866106 (+)
epb41l3a LOC106590342 other downstream 3778577 19598284 ~ 19680110 (+)
G1267949 pck2 other downstream 4944759 20840295 ~ 20841398 (+)
slc12a7b LOC106590280 other downstream 5890685 21729755 ~ 21794253 (+)
LOC110489812 rdh12 other downstream 7237323 23132828 ~ 23146739 (+)
mcmdc2 mcmdc2 other upstream 881 15885437 ~ 15895996 (+)

Expression


Co-expression Network