LOC110489693


Basic Information

Item Value
gene id LOC110489693
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 15894467 ~ 15898010 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002468613.2
GCTCAGACTGCGCATGCCAATAACGATGAAGCAGGAAGTCTTATCTTTCTCTGTGGAAGAACAACGAAGGAGGACGCATGGAGGTTGTATGCTCTCGCACCCATATTATTTTTATGAGCAACAACTTGTTGAGTTCCCCGTTCAGGCAACAGCGTTCATGGACTTGAAGGGTGTTGAAGGATCCAGACACGGATGCATCCTTTGTTGTACTGGAGTTTTTCTTTTGGGGACAGATGGTGCTGGCTATGCCAGTAGTGTACTGAGATTTGATTGGCTGGCAGGGTACTGAAGACGCTATAAGAGATCTACACCAGGGGTGTCACTCATTCCATAGAGAGcctagtgtctgtgggttttggGTTTTCCTTTCAGTTAAGGCTTAGACAACCAGGTGATGGAGTGACCTTAACTCGTCAATCAAGTACAGGGAGCAGTGAAAACCTGCATACACTCTGCCCTTCGTGCAATGAGTTTGACACGCAATCTACATCTTGTTTTTGAGTTAATGGGCCAGGATGTATATTGAAGATCTTGCCCTGTGATTGGGTTTGATGATCCAGTATGTGGAATATGAAGACTTAAATCTCAACCCTATGGTGAGTGTGAGGGCTAAATAGCCAACTGGTTTCCTTCAGTCTTCTACTGGAGTTGTGATGACTTCTCACTTTTGCTATTTACTGATCTGACTAAATTGGGATGCTGTGACTAACTGAACTGCCAATATTAGCATTGATCATTATAGGTAGACGCAGCGATATGGTATAGATGCAGTGAGTAAAGGGGTCAATTTCCACAACTAAGAGTGTTGAAGCGTGAGCATCTTGCTTAGCTCAATATCTGCGGTGCACCTCGTGGCAGGGGCTACCTGCAATCATTAAACCTGCAATCCCTGACTACGGTTTGAGACTCTTATTTCATCATGCAGGATTGTTAGGCCTGCAGTAGGGGAGTTATTTCCTGGGTTGAGAGGTGTCCATtcattttaaatggaattgaTGCCCTTTCTGACATTTCTGCTAATTTACCCTGCTGAAAAGCCATTCATTTGAATTACCAGCATTGTAACTAAACCCACGATGGTAGAAAGTTGTAGGTTGATGGCTAATCTTATTAGACAATGGTCATTTATTTAACTGATTTCTTCTATTCGTTGACAATTCACAAGGTTTGGAAAGCAGTGCATGAACTCCTTCACAAATATGACCCTGGAGACCTAAACTATCACCCTATTTTCACCATTCTTGCCTGTCAAAAAAAGCACAACCTTGGTCTGACTCCCCTGCTTAAggttaaatgtttgttttaatcAGATTTTATTCTGCCCCGTTatgaaataaaatattttatgGTA
>TU1442621
AGAACAACGAAGGAGGACGCATGGAGGTTGTATGCTCTCGCACCCATATTATTTTTATGAGCAACAACTTGTTGAGTTCCCCGTTCAGGCAACAGCGTTCATGGACTTGAAGGGTGTTGAAGGATCCAGACACGGATGCATCCTTTGTTGTACTGGAGTTTTTCTTTTGGGGACAGATGGTGCTGGCTATGCCAGTAGTGTACTGAGATTTGATTGGCTGGCAGGGTACTGAAGACGCTATAAGAGATCTACACCAGGGGTGTCACTCATTCCATAGAGAGcctagtgtctgtgggttttggGTTTTCCTTTCAGTTAAGGCTTAGACAACCAGGTGATGGAGTGACCTTAACTCGTCAATCAAGTACAGGGAGCAGTGAAAACCTGCATACACTCTGCCCTTCGTGCAATGAGTTTGACACGCAATCTACATCTTGTTTTTGAGTTAATGGGCCAGGATGTATATTGAAGATCTTGCCCTGTGATTGGGTTTGATGATCCAGTATGTGGAATATGAAGACTTAAATCTCAACCCTATGGTGAGTGTGAGGGCTAAATAGCCAACTGGTTTCCTTCAGTCTTCTACTGGAGTTGTGATGACTTCTCACTTTTGCTATTTACTGATCTGACTAAATTGGGATGCTGTGACTAACTGAACTGCCAATATTAGCATTGATCATTATAGGTAGACGCAGCGATATGGTATAGATGCAGTGAGTAAAGGGGTCAATTTCCACAACTAAGAGTGTTGAAGCGTGAGCATCTTGCTTAGCTCAATATCTGCGGTGCACCTCGTGGCAGGGGCTACCTGCAATCATTAAACCTGCAATCCCTGACTACGGTTTGAGACTCTTATTTCATCATGCAGGATTGTTAGGCCTGCAGTAGGGGAGTTATTTCCTGGGTTGAGAGGTGTCCATtcattttaaatggaattgaTGCCCTTTCTGACATTTCTGCTAATTTACCCTGCTGAAAAGCCATTCATTTGAATTACCAGCATTGTAACTAAACCCACGATGGTAGAAAGTTGTAGGTTGATGGCTAATCTTATTAGACAATGGTCATTTATTTAACTGATTTCTTCTATTCGTTGACAATTCACAAGGTTTGGAAAGCAGTGCATGAACTCCTTCACAAATATGACCCTGGAGACCTAAACTATCACCCTATTTTCACCATTCTTGCCTGTCAAAAAAAGCACAACCTTGGTCTGACTCCCCTGCTTAAggttaaatgtttgttttaatcAGATTTTATTCTGCCCCGTTatgaaataaaatattttatgGTAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002468613.2 False 1351 mRNA 0.42 6 15894468 15898010
TU1442621 True 1295 lncRNA 0.42 6 15894467 15897953

Neighbor

gene id symbol gene type direction distance location
LOC110489690 LOC106590399 coding downstream 49269 15821701 ~ 15845199 (-)
LOC100135941 LOC100135941 coding downstream 131490 15761444 ~ 15762978 (-)
trnay-gua-4 NA coding downstream 145154 15749229 ~ 15749314 (-)
LOC110489684 LOC106590394 coding downstream 159092 15706942 ~ 15735376 (-)
LOC110489683 LOC106590393 coding downstream 197821 15672037 ~ 15696647 (-)
LOC110489694 LOC106590412 coding upstream 2470 15900480 ~ 15904342 (-)
LOC110489696 cops5 coding upstream 20385 15918395 ~ 15923805 (-)
LOC110490929 LOC106590401 coding upstream 40227 15938237 ~ 16035283 (-)
LOC110490931 cpa6 coding upstream 140632 16038626 ~ 16079595 (-)
LOC110489700 LOC106590414 coding upstream 227358 16125368 ~ 16128702 (-)
G1262521 NA non-coding downstream 45283 15848415 ~ 15849185 (-)
G1262510 LOC106590398 non-coding downstream 77026 15816037 ~ 15817442 (-)
G1262508 NA non-coding downstream 79576 15814645 ~ 15814892 (-)
G1262507 NA non-coding downstream 80022 15814237 ~ 15814446 (-)
G1262563 NA non-coding upstream 36691 15934701 ~ 15935014 (-)
G1262573 NA non-coding upstream 58609 15956619 ~ 15956894 (-)
G1262574 NA non-coding upstream 63302 15961312 ~ 15964183 (-)
G1262568 NA non-coding upstream 138281 16036291 ~ 16036458 (-)
G1262569 NA non-coding upstream 139839 16037849 ~ 16038167 (-)
G1262503 NA other downstream 86851 15806250 ~ 15807617 (-)
G1261796 NA other downstream 388270 15505698 ~ 15506198 (-)
G1261602 NA other downstream 704652 15189546 ~ 15189816 (-)
G1261529 rpl21 other downstream 795752 15096280 ~ 15098716 (-)
G1262745 NA other upstream 377999 16276009 ~ 16276552 (-)
G1263444 NA other upstream 747634 16645644 ~ 16646417 (-)
G1264199 LOC106590429 other upstream 1563818 17461828 ~ 17462977 (-)
G1265249 NA other upstream 2285781 18183791 ~ 18184123 (-)

Expression


Co-expression Network