LOC110489694 (LOC106590412)


Basic Information

Item Value
gene id LOC110489694
gene name LOC106590412
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 15900480 ~ 15904342 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562462.2
GGAATACATTCAAAGTAATATTATTTTCAGAGGGTTATGAGGTGTTTTGATTTCTTGATAACACCATCAAGCACAGTCAGTTATGTAAACATATTTAATGATGGTGATGGAACTTGCACGATAATTGGTATTATTTACATGAGTCTGCACCACACCAAATAATGACGCAACCGCCATAGAACTATATATTATATGTTTCACATTCTTATGTCAAATTAAACTTGGGAAAGCAGCCTTCTTAGGTCAAGGTTAACACACGTGGGTCTCAGTATAATTCTTTTTCAAATGctttattgcaataatgaaggaACAATAACATGTGATTATATTTTCTTTGATATTTGATTGAcattcttcacaacaatttagTAATGTTTTTATTGCATGTTGATTAAGTACATGTTGCCAATATGCGCAATGAATGCTTTATATGGGTATTGCAAATTTAAGTTTACTCAATAGGCCTAATTGGATACAGAATTTGTTGCAATACTATTTTAGCATTAATCTTTTTCAAAATGCCTAAATATTCAACGGCGTGTTTATACACAAGTTCAAAATGCGCACAGTTCAAGACAAGGGTGAGGATTTGATATGCCTGCCTTCATTTATGTTCAGCAACTAACTTGGCCTGTTGCAGATAATTTCAATGCATTTGCGCACACTGGTCAATAGACCTACATAAACTTGTACTATATCTGTAGGCTAATGTAGGCTTATTATAAAATAtgtaatacatattttttttgtttcaatTACAGTCTTGGCATTTTCAGTTTGTTTATGTAATTAATAGGCAAGTGAAAATGTGCATTCATCAACAAGACATATGTTACCCGTCAGGTTTATAAGTGCTCCCTATATGGTTGGAAGACAGACGATACGCATGGATAGTGGAAATGGCCCAGTGACAGTTATGGATGAGAGTCCCACGTctagccccagctccagccccagtccTGACATGCTGACCATCGACAGTCGGCGTCCGGAGGCCCTGCAGCACTCCAGGGTGGTCCAGGCCGGTGGGCTCGGTGGCAGAGGGCGACCGGCAGCAGCCAACGCAGCACGGGAGAGGAGTCGAGTGCAGACCCTGAGAAGCGCATTCCTGGAGCTACAGAGGACTCTTCCGTCGGTGCCACCGGACACAAAACTGTCCAAGCTCGACGTGTTGATTTTGGCCACCACGTATATTGCCCATCTGACTCGGACCTTgcaagaggaggggatggaggagggagagagcaataGACAAACAGAGGCCTTACACTCGCTGAAAGGTGAAGGTTACCTGCACCCTGTGAAAAAGTGGCCAATGCGATCCAGGTTATACGTCGGCGCCAGCGGTCAGTTTCTGAACAATTCAAAACCGACAGAAAATCAAGGCGCATCATCGTCGACCTCGCAGACATAAATCTATCCACGGCATAAGGGACTTCTAATTCAGACGACCATTAATTAGTAAGACTCTTTCAGCTAAATCCACCAATGAGGACTTATGAAATGGACAGCAGATTCGTCATCTGACAGTgcttattattttttatttatcaaaCAACTGAAGTCTCTGCTTTCGACTTCAGTATTTTCATGTAAAGGAGACAGTCACGACTCTTTCAATAGTAGAAACACATTGTAAATTAATATATTATGTGATTATGTATATAAAATCTGAGAAAGCCTGAATATTGTTGCTCTTATTTTGGCCATGCTGTGTTTCTGCTCTGCTGTTCTGTGCCTGTTGGAGATATTAACGTGTGTATGTGTACTTTTTAGAAATTCCGTGTCTGGTGAAATGAACATTTGCACTAAATGCATGTGTGAATAACTTAACATCTGTCATGTGAAGTGATCTGTCAGAATCTCAACAGTGGTAGGAGCCTCTTCATCTTCATCAGTGTTTTGATAATGACTTGAGGAATAGAAATAAGACATGTCTCCCATTCCATCGGTTGTAAATAAGTTTACTGAGATGTATTTGTTCTAAGTGGCCTAAATAATCATGTTCTGTCATTTAAGTCCAGTTTTATCTCTTAACAATCAAGAGGGATTCCATTTGATTATTTGCATGAAAAGGGAATTATGAGTTGACATTCATTTTTTGCAGTCAGATATATATTTTACACAAATGCACAATTTTGCAACCACAACAAACTCCTAATTACAATACATGTTAATGCATTTCAAGGCACATATTGTGGAATGGGCCCTAAGTCTATTCAAAATGGTAGTGACTCTTTCAGTGTGGTGTATAGTGTGTCCAGATACCGAATTCAAAACAATGGGAACTGGGAACGCGGAAATCTCTGAATTccgacttcagtgtgttcaaaacaactgggaactcggaaaaaaactagctctgactgggaaaTCGATTTGAACGTCATCCAATTCCGAATTCCAACTCGGGAGGTCGGGCCTTTTCTAGAGCTCGGACTTCCCGAGCTGAAGATCACTgaagtcatgatttgacctcCCAGTTGTTTTCAACTCGGCAAGAGGCCACTTCTATTAAAGGGAATGTTCGGGATTTGGgcaattaattttaaaaaatgtatctacTTCCCGAGAGTCAGATGAACTGGATataatttgtatgtctctgtgttcagTTTTAAGtaagcctcattgccaaaatcccaaactatCCCGTTAAACCAAAGCATAACTTTTGAGAATTTTAGCTTTATGAAGTTGATATCGAATGTTCAGAGATCAATTTAGAAAGTGCACTTTTATGTAGGCTACTCAGACACTGTTACACTTCTGAAATGTGCAAATTGGAAACTTAGCACAATATTCAAAAGAAAAACTGATAGTTATGGGTTTAAAGGCCCAGTGGAGTAAAACAATTGATTTCCCTGTGTTTCATATACAATCAgtagccagtttattaggtacactcatctatactgaacaaaaatataaacacaacaaagtgttggccccatgtttcatgagctgaaataaaagatcccagaaaatgtCCATTCCTATCAAATTTTGTGcaccaatttgtttacatccctgttagtgagcatttctcttttgccaagataagctattcacctgacaggtgtgacatatcaagaagctgattaaacagc
>XM_021562463.2
CAATAAATTAGAAGCTCCTGAGAGTTTTAAGCACACACTCAGGTGAGCACGCATAGACGCGGACCACTGCGCACCTTTTTCCGCGGCCGCGCCTCTTTATAAAGATTATCTGTACTTGGAGCGGCAGGGCTACTTTTCTCCACCTCCTACTGTAGCAGCAGTGGAGTCTGTGCGGTGCACGATACCTCTCTGCATTGCCTTGATGTCGTTACTCAAGGCGGCGTTTTTGGGGAAATTTTAAGGTTTATAAGTGCTCCCTATATGGTTGGAAGACAGACGATACGCATGGATAGTGGAAATGGCCCAGTGACAGTTATGGATGAGAGTCCCACGTctagccccagctccagccccagtccTGACATGCTGACCATCGACAGTCGGCGTCCGGAGGCCCTGCAGCACTCCAGGGTGGTCCAGGCCGGTGGGCTCGGTGGCAGAGGGCGACCGGCAGCAGCCAACGCAGCACGGGAGAGGAGTCGAGTGCAGACCCTGAGAAGCGCATTCCTGGAGCTACAGAGGACTCTTCCGTCGGTGCCACCGGACACAAAACTGTCCAAGCTCGACGTGTTGATTTTGGCCACCACGTATATTGCCCATCTGACTCGGACCTTgcaagaggaggggatggaggagggagagagcaataGACAAACAGAGGCCTTACACTCGCTGAAAGGTGAAGGTTACCTGCACCCTGTGAAAAAGTGGCCAATGCGATCCAGGTTATACGTCGGCGCCAGCGGTCAGTTTCTGAACAATTCAAAACCGACAGAAAATCAAGGCGCATCATCGTCGACCTCGCAGACATAAATCTATCCACGGCATAAGGGACTTCTAATTCAGACGACCATTAATTAGTAAGACTCTTTCAGCTAAATCCACCAATGAGGACTTATGAAATGGACAGCAGATTCGTCATCTGACAGTgcttattattttttatttatcaaaCAACTGAAGTCTCTGCTTTCGACTTCAGTATTTTCATGTAAAGGAGACAGTCACGACTCTTTCAATAGTAGAAACACATTGTAAATTAATATATTATGTGATTATGTATATAAAATCTGAGAAAGCCTGAATATTGTTGCTCTTATTTTGGCCATGCTGTGTTTCTGCTCTGCTGTTCTGTGCCTGTTGGAGATATTAACGTGTGTATGTGTACTTTTTAGAAATTCCGTGTCTGGTGAAATGAACATTTGCACTAAATGCATGTGTGAATAACTTAACATCTGTCATGTGAAGTGATCTGTCAGAATCTCAACAGTGGTAGGAGCCTCTTCATCTTCATCAGTGTTTTGATAATGACTTGAGGAATAGAAATAAGACATGTCTCCCATTCCATCGGTTGTAAATAAGTTTACTGAGATGTATTTGTTCTAAGTGGCCTAAATAATCATGTTCTGTCATTTAAGTCCAGTTTTATCTCTTAACAATCAAGAGGGATTCCATTTGATTATTTGCATGAAAAGGGAATTATGAGTTGACATTCATTTTTTGCAGTCAGATATATATTTTACACAAATGCACAATTTTGCAACCACAACAAACTCCTAATTACAATACATGTTAATGCATTTCAAGGCACATATTGTGGAATGGGCCCTAAGTCTATTCAAAATGGTAGTGACTCTTTCAGTGTGGTGTATAGTGTGTCCAGATACCGAATTCAAAACAATGGGAACTGGGAACGCGGAAATCTCTGAATTccgacttcagtgtgttcaaaacaactgggaactcggaaaaaaactagctctgactgggaaaTCGATTTGAACGTCATCCAATTCCGAATTCCAACTCGGGAGGTCGGGCCTTTTCTAGAGCTCGGACTTCCCGAGCTGAAGATCACTgaagtcatgatttgacctcCCAGTTGTTTTCAACTCGGCAAGAGGCCACTTCTATTAAAGGGAATGTTCGGGATTTGGgcaattaattttaaaaaatgtatctacTTCCCGAGAGTCAGATGAACTGGATataatttgtatgtctctgtgttcagTTTTAAGtaagcctcattgccaaaatcccaaactatCCCGTTAAACCAAAGCATAACTTTTGAGAATTTTAGCTTTATGAAGTTGATATCGAATGTTCAGAGATCAATTTAGAAAGTGCACTTTTATGTAGGCTACTCAGACACTGTTACACTTCTGAAATGTGCAAATTGGAAACTTAGCACAATATTCAAAAGAAAAACTGATAGTTATGGGTTTAAAGGCCCAGTGGAGTAAAACAATTGATTTCCCTGTGTTTCATATACAATCAgtagccagtttattaggtacactcatctatactgaacaaaaatataaacacaacaaagtgttggccccatgtttcatgagctgaaataaaagatcccagaaaatgtCCATTCCTATCAAATTTTGTGcaccaatttgtttacatccctgttagtgagcatttctcttttgccaagataagctattcacctgacaggtgtgacatatcaagaagctgattaaacagc

Function

NR:

description
transcription factor 24 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562462.2 False 3110 mRNA 0.39 2 15900480 15904068
XM_021562463.2 True 2509 mRNA 0.42 3 15900480 15904342

Neighbor

gene id symbol gene type direction distance location
LOC110489693 NA coding downstream 2470 15894467 ~ 15898010 (-)
LOC110489690 LOC106590399 coding downstream 55281 15821701 ~ 15845199 (-)
LOC100135941 LOC100135941 coding downstream 137502 15761444 ~ 15762978 (-)
trnay-gua-4 NA coding downstream 151166 15749229 ~ 15749314 (-)
LOC110489684 LOC106590394 coding downstream 165104 15706942 ~ 15735376 (-)
LOC110489696 cops5 coding upstream 14053 15918395 ~ 15923805 (-)
LOC110490929 LOC106590401 coding upstream 33895 15938237 ~ 16035283 (-)
LOC110490931 cpa6 coding upstream 134300 16038626 ~ 16079595 (-)
LOC110489700 LOC106590414 coding upstream 221026 16125368 ~ 16128702 (-)
LOC110489698 LOC106590406 coding upstream 224660 16129002 ~ 16144964 (-)
G1262521 NA non-coding downstream 51295 15848415 ~ 15849185 (-)
G1262510 LOC106590398 non-coding downstream 83038 15816037 ~ 15817442 (-)
G1262508 NA non-coding downstream 85588 15814645 ~ 15814892 (-)
G1262563 NA non-coding upstream 30359 15934701 ~ 15935014 (-)
G1262573 NA non-coding upstream 52277 15956619 ~ 15956894 (-)
G1262574 NA non-coding upstream 56970 15961312 ~ 15964183 (-)
G1262568 NA non-coding upstream 131949 16036291 ~ 16036458 (-)
G1262569 NA non-coding upstream 133507 16037849 ~ 16038167 (-)
G1262503 NA other downstream 92863 15806250 ~ 15807617 (-)
G1261796 NA other downstream 394282 15505698 ~ 15506198 (-)
G1261602 NA other downstream 710664 15189546 ~ 15189816 (-)
G1261529 rpl21 other downstream 801764 15096280 ~ 15098716 (-)
G1262745 NA other upstream 371667 16276009 ~ 16276552 (-)
G1263444 NA other upstream 741302 16645644 ~ 16646417 (-)
G1264199 LOC106590429 other upstream 1557486 17461828 ~ 17462977 (-)
G1265249 NA other upstream 2279449 18183791 ~ 18184123 (-)

Expression


Co-expression Network