Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110489696 |
| gene name | cops5 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048579.1 |
| NCBI id | CM023233.2 |
| chromosome length | 81569517 |
| location | 15918395 ~ 15923805 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| cops5 | Predicted to enable NEDD8-specific protease activity and metallopeptidase activity. Acts upstream of or within vestibular receptor cell development. Predicted to be located in cytosol and nucleus. Predicted to be part of COP9 signalosome. Predicted to be active in cytoplasm. Is expressed in head. Orthologous to human COPS5 (COP9 signalosome subunit 5). |
| description |
|---|
| PREDICTED: COP9 signalosome complex subunit 5 |
| id | name | namespace |
|---|---|---|
| GO:0006508 | proteolysis | biological_process |
| GO:0048471 | perinuclear region of cytoplasm | cellular_component |
| GO:0008180 | COP9 signalosome | cellular_component |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0008237 | metallopeptidase activity | molecular_function |
| id | description |
|---|---|
| K09613 | COPS5, CSN5; COP9 signalosome complex subunit 5 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021562464.2 | True | 2040 | mRNA | 0.46 | 8 | 15918395 | 15923805 |
15,911,000
15,912,000
15,913,000
15,914,000
15,915,000
15,916,000
15,917,000
15,918,000
15,919,000
15,920,000
15,921,000
15,922,000
15,923,000
15,924,000
15,925,000
15,926,000
NC_048579.1
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| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110489694 | LOC106590412 | coding | downstream | 14053 | 15900480 ~ 15904342 (-) |
| LOC110489693 | NA | coding | downstream | 20385 | 15894467 ~ 15898010 (-) |
| LOC110489690 | LOC106590399 | coding | downstream | 73196 | 15821701 ~ 15845199 (-) |
| LOC100135941 | LOC100135941 | coding | downstream | 155417 | 15761444 ~ 15762978 (-) |
| trnay-gua-4 | NA | coding | downstream | 169081 | 15749229 ~ 15749314 (-) |
| LOC110490929 | LOC106590401 | coding | upstream | 14432 | 15938237 ~ 16035283 (-) |
| LOC110490931 | cpa6 | coding | upstream | 114837 | 16038626 ~ 16079595 (-) |
| LOC110489700 | LOC106590414 | coding | upstream | 201563 | 16125368 ~ 16128702 (-) |
| LOC110489698 | LOC106590406 | coding | upstream | 205197 | 16129002 ~ 16144964 (-) |
| LOC110489701 | LOC106590404 | coding | upstream | 237549 | 16161354 ~ 16177141 (-) |
| G1262521 | NA | non-coding | downstream | 69210 | 15848415 ~ 15849185 (-) |
| G1262510 | LOC106590398 | non-coding | downstream | 100953 | 15816037 ~ 15817442 (-) |
| G1262508 | NA | non-coding | downstream | 103503 | 15814645 ~ 15814892 (-) |
| G1262563 | NA | non-coding | upstream | 10896 | 15934701 ~ 15935014 (-) |
| G1262573 | NA | non-coding | upstream | 32814 | 15956619 ~ 15956894 (-) |
| G1262574 | NA | non-coding | upstream | 37507 | 15961312 ~ 15964183 (-) |
| G1262568 | NA | non-coding | upstream | 112486 | 16036291 ~ 16036458 (-) |
| G1262569 | NA | non-coding | upstream | 114044 | 16037849 ~ 16038167 (-) |
| G1262503 | NA | other | downstream | 110778 | 15806250 ~ 15807617 (-) |
| G1261796 | NA | other | downstream | 412197 | 15505698 ~ 15506198 (-) |
| G1261602 | NA | other | downstream | 728579 | 15189546 ~ 15189816 (-) |
| G1261529 | rpl21 | other | downstream | 819679 | 15096280 ~ 15098716 (-) |
| G1262745 | NA | other | upstream | 352204 | 16276009 ~ 16276552 (-) |
| G1263444 | NA | other | upstream | 721839 | 16645644 ~ 16646417 (-) |
| G1264199 | LOC106590429 | other | upstream | 1538023 | 17461828 ~ 17462977 (-) |
| G1265249 | NA | other | upstream | 2259986 | 18183791 ~ 18184123 (-) |
