LOC110489696 (cops5)


Basic Information

Item Value
gene id LOC110489696
gene name cops5
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 15918395 ~ 15923805 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562464.2
aTGTCCCCCTTCCTCATAGCATGGTACAGTCCAGTGTCATGGCTCCCTGAACGAATGGATGAGCAAGGGCTACTGCTTTGAGATTATGTTATTATTACAGGTTTTTGAAATATTCCACGTTTGATAGCGCACTAGTTTTCTTTCTAGTATTACGTTATATTTTAGAGAGGTAGTGAGACTAGGTTGTCAACATGGCAGGGAGTAGCATGGCACAGAAAACATGGGAGCTACAAAACAGTATGCAGGAAGTTCAGAGCATAgatgaaatatataaatatgacaaaaaacaacaacaggaaaTCCTTGCTGCGAAGCCATGGACAAAGGAtcatcattacttCAAATACTGCCAGATATCTGCTCTGGCGCTGCTGAAGATGGTGATGCACGCCAGGTCCGGGGGCAACCTCGAGGTGATGGGTCTGATGCTTGGGAAAGTGGACGGGGAGACCATGAACATCATGGACAGCTTTGCCTTACCCGTGGAGGGCACAGAGACGCGGGTCAACGCCCAGGCTGCGGCTTATGAATACATGGCTGCCTACATTGAGAATGCCAAACAGGTTGGTCGGCTGGAGAACGCTATTGGCTGGTACCACAGTCACCCAGGTTACGGCTGCTGGTTGTCAGGTATAGATGTCAGCACTCAGATGCTCAACCAGCAGTTTCAGGAGCCCTTTGTGGCGGTGGTGATCGACCCCACTCGCACCATATCTGCAGGGAAAGTCAATCTTGGCGCCTTCAGAACATACCCCAAGGGTTACAAACCTCCTGATGAGGGACCCTCTGAATATCAGACCATTCCCCTGAACAAGATCGAAGACTTCGGCGTGCACTGCAAACAGTATTATGCCTTGGAGGTGACTTATTTCAAGTCTTCCCTGGATCGAAAATTACTGGAGCTCCTCTGGAATAAATACTGGGTCAACACTCTGAGCTCTTCAAGTCTTCTGACGAATTCAGAGTACACCACGGGCCAGGTGTTTGACTTGTCTGAGAAACTGGAGCAGTCAGAGGCTCAGCTTGGAAGAGGAAGCTTCATGCTGGGCCTGGACACACACGACAGGAAGTCCGAGGACAAACTGGCCAAAGCAACACGAGACAGCTGCAAGACGACAATTGAGGCGATCCATGGTCTGATGTCTCAAGTCATCAAGCATAAGCTCTTCAATCAAATCAACACGTCTGCCATCTAAGCCCGAAACAGTCCAAGTGGAGTCACCCCTCGTGTGTGTATTACTATTTAGATTCTGGTTAGCAGGATGATCTTTCAATTATTATCTGAGGAAAGTTTATTGGTTTTATCTTCAGCTATTCTTTAGTGTGAGTGATTGATCTCAACTTATGTCCACATAAGTGTATGAATAAATAGTGTTGTTAAAATGTATCTACGTTAGTTTTCCTTCTTTGACTTGAAGTATCACCATTTTCATTGAATAATTCCTGAGGTTGGTGAACCATATTGTTTTGACTGAATTGCTTCCAACTTTAGTTCATGTATTTTCTTATTTTTGAATGCTTGCAGACTTTTGAAAGGTATTCTCCTTTGGGTTCAACATGACATAGCACTGTGACATTTCCATGTCCCATGGCTGTTAGGTATTGGCTAgagtagactacacacacacaccctcacagcaTGACTTAACACTTTAACAAAGACCATGGTATATTACTCCATAACAAAACCtacaaccagtcagccagtcatttCAACTCTGGCCAGTCATATCATTACATTATGGAACAACAAACTCAAGCCGCTGCATTGGCTCAAACGTAAACACTGGCTGGCATGGTCGAGAAGTCTCTGCGGAGTGGCTTTCGGTGCAGGTTGTCTCTCTGTAGTACACAATCCTTCAGGATTGTCAAGTCGTCAAGTCGAGCCGCGGCAATGATGCAGCACAGAAACAGGAGCCGTGCACACTGCAGTCTATTCACCCAACCCGTCTACATCGAAGCAGACACAGAGTCTGCTTTTCCTTACACACTGCAGCCCTGGCACCGTTTAATGTCAGAATTCTTTTTCTTGTAGTATTA

Function

symbol description
cops5 Predicted to enable NEDD8-specific protease activity and metallopeptidase activity. Acts upstream of or within vestibular receptor cell development. Predicted to be located in cytosol and nucleus. Predicted to be part of COP9 signalosome. Predicted to be active in cytoplasm. Is expressed in head. Orthologous to human COPS5 (COP9 signalosome subunit 5).

NR:

description
PREDICTED: COP9 signalosome complex subunit 5

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0008180 COP9 signalosome cellular_component
GO:0046872 metal ion binding molecular_function
GO:0008237 metallopeptidase activity molecular_function

KEGG:

id description
K09613 COPS5, CSN5; COP9 signalosome complex subunit 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562464.2 True 2040 mRNA 0.46 8 15918395 15923805

Neighbor

gene id symbol gene type direction distance location
LOC110489694 LOC106590412 coding downstream 14053 15900480 ~ 15904342 (-)
LOC110489693 NA coding downstream 20385 15894467 ~ 15898010 (-)
LOC110489690 LOC106590399 coding downstream 73196 15821701 ~ 15845199 (-)
LOC100135941 LOC100135941 coding downstream 155417 15761444 ~ 15762978 (-)
trnay-gua-4 NA coding downstream 169081 15749229 ~ 15749314 (-)
LOC110490929 LOC106590401 coding upstream 14432 15938237 ~ 16035283 (-)
LOC110490931 cpa6 coding upstream 114837 16038626 ~ 16079595 (-)
LOC110489700 LOC106590414 coding upstream 201563 16125368 ~ 16128702 (-)
LOC110489698 LOC106590406 coding upstream 205197 16129002 ~ 16144964 (-)
LOC110489701 LOC106590404 coding upstream 237549 16161354 ~ 16177141 (-)
G1262521 NA non-coding downstream 69210 15848415 ~ 15849185 (-)
G1262510 LOC106590398 non-coding downstream 100953 15816037 ~ 15817442 (-)
G1262508 NA non-coding downstream 103503 15814645 ~ 15814892 (-)
G1262563 NA non-coding upstream 10896 15934701 ~ 15935014 (-)
G1262573 NA non-coding upstream 32814 15956619 ~ 15956894 (-)
G1262574 NA non-coding upstream 37507 15961312 ~ 15964183 (-)
G1262568 NA non-coding upstream 112486 16036291 ~ 16036458 (-)
G1262569 NA non-coding upstream 114044 16037849 ~ 16038167 (-)
G1262503 NA other downstream 110778 15806250 ~ 15807617 (-)
G1261796 NA other downstream 412197 15505698 ~ 15506198 (-)
G1261602 NA other downstream 728579 15189546 ~ 15189816 (-)
G1261529 rpl21 other downstream 819679 15096280 ~ 15098716 (-)
G1262745 NA other upstream 352204 16276009 ~ 16276552 (-)
G1263444 NA other upstream 721839 16645644 ~ 16646417 (-)
G1264199 LOC106590429 other upstream 1538023 17461828 ~ 17462977 (-)
G1265249 NA other upstream 2259986 18183791 ~ 18184123 (-)

Expression


Co-expression Network