LOC110490931 (cpa6)


Basic Information

Item Value
gene id LOC110490931
gene name cpa6
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 16038626 ~ 16079595 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036943874.1
CACACACCAGGTCACGTGACTCAGATCCTGCACATTTAAAAAAGAACGGGATTTATAATTCCCACCAGGGCTTCAAAGAGGTGGATAAATTGCTCCCCGTTGCCAGTTAATTAACCGACTTTCGCACCTCCGCGGCACTTCTGTGCAATTGACAGCGCGCAGAACGCACCAACGACCCATGAGACTCCATCAGCAAACCTGATGACGAGCGGCCCATCCTTATTTTTAACCCTCAGTTTCTATTCTTATACTGTACGAAGTTGATCGAAGCCTGCAGAGAAATCATCTTCGAGGGCGAGAAGTGGGGCTGTCCTCTGTCGTTATTAATATTCGCTCAGGATGGCAGTGGACTTTAGATGCGCAGTTCACGGCTCAGTCTTTTGGGGCTGTGTGGTTATCCTCAGTAACGTGCTATGTCCCATTGATGCGTACCTCTACAACAACCGCTATGCAGGTGATCAAGTCTTCAGGATAACTCCCAGCAACGAGGGGGAGGTTCAGGAACTCAAGAAACTCCTGGGAAACATCAAGgtGGACCTGTGGCAGCCCAACAGTGCCTCTCTGATCCGACACAACGCCACCGTGGACGTGCATGTGAGACGGAACAACACGCGAGGGCTTCGTGCATGCCTCCAGAAGGAACACATAGATTTTAAggTGTTCATATCTAACCTTCAGAAGGAAATTGAAAAGCAGACTGGATATCGCTCTTCCCGCAAGAGGAGGTCTGAATCCCAATATGACTATGAGGTGTACCACTCTCTGGAGGAGATCCAGAGTTGGATGTTTGAGATCAACAGGACCCATCCTCAcctggtggacatgttctctatAGGGAGGTCATATGAAGGCAGGCCCCTTTATGTGCTTCAGctAGGAAAGAGAACACGGTCCTATAAGAAGGCAGTGTGGATAGACTGTGGGGTCCATGCAAGGGAGTGGATTGGACCAGCCTTCTGCCAGTGGTTTGTCAAAGAGGCTCTGCATTCCTACCAGCATGACTCTGTGATGAGACGACTGATGAACCAActcaacttctacatcatgccTGTCTTCAACGTGGATGGATACATCTTCAGCTGGACTACAGATCGTTTCTGGAGGAAAACCCGGTCCAAAAACGTCAAGTATCACTGCAGAGGTGTTGACGCCAACAGGAACTGGAAAGTCAAGTGGTGTGAGGAGGGTGCATCCTCTCACCCCTGTGATGACACGTACTGCGGACCCTTCCCTGAGTCCGAGCCGGAGGTCAAGGCAGTGGCCAAGTTCCTGCGGAAGCACAAGAAGCGTGTCAAGGCCTACGTCTCCATCCACGCCTACGCCCAAATGTTGCTCTACCCCTACTCCTATAAATACGCCACCATCCCTAACTTCAACTGTGTGGAGTCAGCTGCACACAATGCAGTGACTGCCCTGTACTCTGCCTACGGAGTGAGGTACAGATATGGACCCGCCTCCACCACGCTGTATGTCAGCTCAGGCAGCTCCATGGACTGGGCCTATAGGAACGGGATCCCTTATGCCTTTGCCTTTGAACTGCGGGACACAGGCTACTTTGGCTTCCTGTTACCTGAAGCTCTGATCAACCCCACCTGTACTGAGACCATGAGAGCAGTGAAGACCATCTCATCAGGCCTACTGAAGAAGTGTGAGACAGGGATGTATCAGCTGGACAGGGAGAGATATCCATATCTCTGAGATATATAAACATTTACAGTATCTCTGCATCTGCTAGAGAATAACTACGGGTGGTGGGTTATTGTGCCAAAAAGGAAAATGCAACATATATCATGCAAGCCTTGATGTTTACCCAAGAGTGGTCACCACTCCATTTTATGTCTGTATGTTAGAGGCTATAGTGCTACTTAAAAATGCCCTCAAACTGGTTTCAAATGTAAAATTATTTAGATGTCATATTACATCAAATCTTCACCTTGTACTATCAACAACTCGACTGTTTACAGTGTACGGTGAACGCAAGCACTTGAATGCCATTTTCAAGAGACTGATATTGCATTTCACAGAGTCTTTTTCTTGAACTTGCAGTTTTGACCCATTAAAGCTTCACTATCTGGAGCACCATCAGCTAACTCAGTAGTGTAGtcgtgcctggagaagtgggtatattCTATCTTTTGCCAAAGATGTCCCAAACGGCCCGCCGGGTGAATTCTATGAGAAACAGTGACATACACTCTGAATGACCTAAAATGataaatcccatattggtctttcatagtcaggccaacccaagctgtactgtgcaagTAGGCTAATAGTAGACCTACTACTGAAATGGATACATGAGGCTGGCCAACGGCAgttttttttaatagaaaaacaacaaaatggaATGTTATAACTCCATAACAATGTTTAAACCACATCCGGAGACCACTTTTGATGTCAGGGAACAATCTAAGAAATTTAGAGTTTTTTGTGTAGTTACCCTATAATTTGCAGGCACCAAGCACTGTTGTTTGATTAGCTGTGTTTCTGTAGGACATGAGAttgagtttgcaaaacaaatggccactagATTGACGCAAATAATcctgatataattctgccaggtaggcataggctactttgtagctaGTTAATGCTTAATTtagaaggtttttgggaaagcatttccatctaccagaagacgaTTAGGCCTATCATTAGTATTGCTATATTTTTCCTGCTCCTTCATTGTCTGAAACCAGGATGTTTTAtctcatattatgaggcatgtttcAAAGTAGCTTATTGCCAAAATCCCACCATAGAAatgtggaggcaattattttatgaAGACTTATACTGGTTTTCTTTCAAATTTCTTTCATTGTCTAGCAGCCAAAGGCATTGTCcaagtcatattagcaacccatgataataattataacaattttaaaaaatgataacAATtattgttgcatctttagatcttcCCTCTTTCAAAATATCTAAAGGATATTTACATCTCTGTCCTTGAAACTGCTTGCATGTGCAGTGCACATTTTAGAACAGTGTTTTCCCGCATAGGCCTACCGCCATGTGCACATTGCTGAGCCTAAAATGTGAAATAATCGTTTTtgaacattttaagctaaacattctaaTCTGTTCCATCAGCCTTATTAATTGATATGGcatatacctccactacactactttgatatgcATCATGGCAATTAAGAAGTGAGTAAACGCAATATGTGGGCATAAGCCGTATGTATACCTGCATGTTCCACCCACTAAACCACTGAGCTAACTGCTCTAGATGTCTTCTAAAGACATTTTACATGAATTGTGGTAGAACAAGGTCCTAAAAATGTGTTTATATGGTACAAACAACAAGGATGCCTAAAGTATCAATGAAGGGATAGTTCACACAAACTACACAATTACGTATGGGTTTCCTtgccctgtaagcagtctatggacaacgtATGACAGCAAATCATGCTTTAGTTTGTTTAGCTGGCCACTGTTCCAATGCAAATTCAATGCAAGTCAACAGTACCTGTATTATAATTTTTGCACTTTATGTATCTAAAACTGTATTGTGTAACTCAATGAAGTTACTTATGGATCATTTGGACATTAACGTAAAATGCTTATATAGGTACAATTGGCTTGCATTGGATTTCTTCTACAAATGCAGAAAAGTTATCATTTGAAACAGTATccaggtaaacaaaaccaaagcatggattgctgtcatatcTTGCCCATGGGCTGCTTACATGGTAAGTAAACCCATGTGTAATTTTGTTTTTTggttgaactatccctttaacaaagTGCCTTGAAATGGACTTTAAACGCTTTTTATAATTCTGTAAAGGAtaagtttatattttttttatcaagggaaaATGTTTACTTTTGATAGAAAGTGTAAAGGACATTTACTGAAATGTAATACATGTTATTTCTTTTTTA
>TU1442667
GTAAGTAAACCCATGTGTAATTTTGTTTTTTggttgaactatccctttaacaaagTGCCTTGAAATGGACTTTAAACGCTTTTTATAATTCTGTAAAGGAtaagtttatattttttttatcaagggaaaATGTTTACTTTTGATAGAAAGTGTAAAGGACATTTACTGAAATGTAATACATGTTATTTCTTTTTTATGAGGTTGTCACGTGG

Function

symbol description
cpa6 Enables carboxypeptidase activity. Predicted to be involved in proteolysis. Predicted to be active in extracellular space. Is expressed in several structures, including head; pectoral fin; pectoral fin bud; segmental plate; and tail bud. Human ortholog(s) of this gene implicated in familial febrile seizures 11 and familial temporal lobe epilepsy 5. Orthologous to human CPA6 (carboxypeptidase A6).

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004181 metallocarboxypeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036943874.1 False 3936 mRNA 0.42 11 16038642 16079595
TU1442667 True 212 lncRNA 0.28 1 16038626 16038837

Neighbor

gene id symbol gene type direction distance location
LOC110490929 LOC106590401 coding downstream 3359 15938237 ~ 16035283 (-)
LOC110489696 cops5 coding downstream 114837 15918395 ~ 15923805 (-)
LOC110489694 LOC106590412 coding downstream 134300 15900480 ~ 15904342 (-)
LOC110489693 NA coding downstream 140632 15894467 ~ 15898010 (-)
LOC110489690 LOC106590399 coding downstream 193443 15821701 ~ 15845199 (-)
LOC110489700 LOC106590414 coding upstream 45773 16125368 ~ 16128702 (-)
LOC110489698 LOC106590406 coding upstream 49407 16129002 ~ 16144964 (-)
LOC110489701 LOC106590404 coding upstream 81759 16161354 ~ 16177141 (-)
shrprbck1r LOC106590417 coding upstream 127197 16206792 ~ 16219467 (-)
LOC110489704 LOC106590419 coding upstream 239304 16318899 ~ 16324594 (-)
G1262569 NA non-coding downstream 475 16037849 ~ 16038167 (-)
G1262568 NA non-coding downstream 2184 16036291 ~ 16036458 (-)
G1262574 NA non-coding downstream 74459 15961312 ~ 15964183 (-)
G1262573 NA non-coding downstream 81748 15956619 ~ 15956894 (-)
G1262563 NA non-coding downstream 103628 15934701 ~ 15935014 (-)
G1262650 NA non-coding upstream 6042 16085637 ~ 16085880 (-)
G1262694 NA non-coding upstream 120935 16200530 ~ 16200789 (-)
G1262697 NA non-coding upstream 123038 16202633 ~ 16202844 (-)
G1262699 NA non-coding upstream 140884 16220479 ~ 16220739 (-)
G1262708 NA non-coding upstream 150381 16229976 ~ 16230355 (-)
G1262503 NA other downstream 231025 15806250 ~ 15807617 (-)
G1261796 NA other downstream 532444 15505698 ~ 15506198 (-)
G1261602 NA other downstream 848826 15189546 ~ 15189816 (-)
G1262745 NA other upstream 196414 16276009 ~ 16276552 (-)
G1263444 NA other upstream 566049 16645644 ~ 16646417 (-)
G1264199 LOC106590429 other upstream 1382233 17461828 ~ 17462977 (-)
G1265249 NA other upstream 2104196 18183791 ~ 18184123 (-)
G1265456 LOC106590371 other upstream 2496944 18576539 ~ 18580163 (-)
G1262624 NA non-coding upstream 4361 16043198 ~ 16043525 (-)

Expression


Co-expression Network