shrprbck1r (LOC106590417)


Basic Information

Item Value
gene id shrprbck1r
gene name LOC106590417
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 16206792 ~ 16219467 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562478.2
CGTGTGGGGGCGCAAATGATTAGCACTGGCAGCACGAGAGAGCCAGCCAAACAAACAGTGACACAGAGTGCGCACTTCCTGGTAGCTAGCTGGTCGTCCATCGGTTCTGTTGTTGTGAGCTTGGTAAATGGAGGGACTACGATGAAACGGCACATTTTATGGGAATACTAATAGCAATCGTTGCTGACAATATTGGCGTGGTGTTAAACACACCGGGAACGGTGTCTTGACGTCTCCAAACACTGCATGAGGCTGTTGGTGGAATGTCGCTGAGCTCAGGCGGGTGGACTACTCACACTCCACCGCCGGACCCGTCCTCATCAATCCCTGGCTATGGGGCCTCACAAACTGGCTGCCATACTGTCTTGATGTCGGTACGGGTATCAGTTTGCCATTCTGGTATTCGGCCACTGTGTCTTCCTGGGGCAGGTGATGAGTCACTCCGTCTACAGCTCAGTATGGACCCCGGGAAGTCCGGGGAATTCCGTCTCACGCTACGGGACACCAGCGGAACAACGGGTCGGAGTGTgTCCATTGCAGAGTTTGACCTGAGGTCGGTGCACTATGAGGTGAAATCGCCAAAATGCCACGAGCTGAGTTTGTTCATGCCCCCTCACGACCGCATCAGCTTCAACTTCCGCTGCGAGCAGGAGGCTCAGGAGTGGGCCACCGTGGTGATATCGTCACTCAGAGAGGCACACAGGGtgtCCGACAGCCCTCCCACTGATGACCGACAACTTCCTCTGGAGGCCTTGGAGACACCCAGCTCCGCTTCCTTACCACGCACAGAGGAGATGTGTGCTGAGCTGACCAGGGCCATCGAGGCTGGTGACATCCAGGCGGCCTCCATCTACGCTGCCACCCTGGCTCGTCAGCAGGCAGAGCTGAAGATCCAGCCCTCTGAGAGGAGCTACGGAGACACAGATCTTAGCTTGGCTGTAGTGGTCGAAGATTCTTCGTCTTCCTGTTGTGTCACAGTGAAAGTCCCCCCCCACGCGACCATCGCAATACTCAAGCAGCAGGTATTCCTGGAGTATGGCTTCCATCCGCGGGTGCAGCGCTGGGTGATTGGCCAATGTCTGTGTGCAGACCAGCGCTCTCTCGCGTCCTACGGGGTGCGTAGGGATGGAGACACGGCCTTCCTGTACCTCCTCTCTGCCCGCCACGCCCGTCTCACACGGCAGCTGCTCCAGCAGGACCAGGAAAGAGCCCTCCTCACCCCCGCTACCCCTCCTCTTGAGACCCCAAGCAACGGCCCCACATCCCAGGACTGGAGGGGTTACAGCACCCTGCCCCCCAGACTGAGCCACAGCAGCATGGGTTCAAATGGAGCGGGGCCAAATGGAGCCGGGGCAGAGAGGCTGAAAATCAGTGAAATCAAAGACCTCATCAACCTGGAGATGCCGCAACTCACCGAAGCACTTACCCCTAAGAAATCAGGGCCACAGggttgggccTGCCCCTCTTGCACGTACATAAACAAGCCCACACGGCCTGGCTGTGAGATCTGCAGTACAGACCGTCCAGAGAGCTATACTGTTCCTGGGAGCTACAAACCAGACCCTCTGGAGCTTCACCGCATACAGCAGGAGAAAGAAGCTGTCCGACAGTACCAGCAGGCGAGGGAAGCAGAGCGGAGGGAGAACTTTGCCCGGCTGGTGATGTTGGATGGAAAGGACCTGGTGCCCAACCCAGATGCTGTGGACTGTAGGATCTGTTACCTGGACCTGCAGCCTGGGGAGGGAGTCCTGCTCAGAGAGTgtctccactgtttctgcagAGATTGCCTGCGCTCAGTAGTCCTGATGTGTGAGGACCCGGAGGTGGCCTGTCCGTACCGTGATGACACGTACGCCTGTGACTGCACCCTGCAGGGGAGAGAGATCAGAGCCTTGGTGTCGGAAGAGGAGTACGAGCGCTGGCTGCAGAGAGGCTTGTCTGTGGCAGAGTCTCGTTGTGAGGGCAGTTACCACTGTGCCAGCCCAGACTGTGCCGGGTGGTGTGTGTACGAGGACACCGTCAACGTGTTCCACTGCCCAGTCTGCAACAAGCACAACTGCCTGCTCTGCAAGgcgATTCATGAAGGGATGGACTGTAAGCAGTACCAGGATGACCTTACAACCCGTGCTGAGAACGACTCGGCAGCCCGCAGAACCAGAGATCTGCTCAAGACCCTGGTCCTCTCCGGGGAGGCCATGCACTGCCCACAGTGCGGCATCATCGTGCAGAAaaaggagggctgtgattggCTGCGTTGCACTGTCTGTCACAATGAGATCTGCTGGGTCACCAGGGGGCCTCGCTGGGGGCCTGGGGGTCCGGGAGACACCAGCGGAGGCTGCCGCTGTAACATCAACAACCAAAAATGTCACCCAAAGTGTCAGAACTGCCACTGAGAAAGACAATGAGGGATGTGTGCGTTAAGAGTAAGATAGGACAAATTAAGTGTGTGTCACTCAAAGGATTGATGATTGCACTGCACATTTAGCTATGCACGTTTTCTGTTGGTTTCTGTTCTCCCTTTAGGCTGTGTTTAGATAGTCAGTCCAATTATGATATTGTTTTCACTCATTTGTCTATTGACCAATCAGATAAGCTCTGAAAAAGACCTGATGTGATTGgccaaaataccaattagtggaaaaaataacAGAATTGGACTGCTTGTCTAAATGCAGCCCGAGTCATGCAATactgttcagggacacattaaaCTAAGTGTACTTAACTTTTTCAGCCCTCAAAGCCAAAGTCTAATGCTAATGACCGCATTCTGGGGTTGTAACAGAGAGCGTACTGTGTTCTAACTGGACATAAGAAACAGAACAAACAATCTCTGTTTCAAACTGCACTGCGTTGTGTGCCAATTAATAGCCATTTTGAAAGTACATGCGAGTTCATGTGAAATGAATACTTCTgcatgtttttctatgttttagcACCTCTGAATGAATGCCAGGCTCTGTCATGTAGATTTGTTTCCAAGACTAAGTGTTCTATTTTGCTCTATTTATTACTCACAGGCTCTGGTTACAGACAGACAAATGTATGAACGCCAAGAAAACACTTTCTATCTGCCAGTTTTCATGGAATAATCAGATTTGCTCAGTAACTGCTGTGTGCCATAGTGAGTTTTTAAAACAGTGTGTCAATAAAGCCACTCTAAACACAA
>XM_036943878.1
TCCACTGGCGCACACATGAAGTCCATTGCAGAGTTTGACCTGAGGTCGGTGCACTATGAGGTGAAATCGCCAAAATGCCACGAGCTGAGTTTGTTCATGCCCCCTCACGACCGCATCAGCTTCAACTTCCGCTGCGAGCAGGAGGCTCAGGAGTGGGCCACCGTGGTGATATCGTCACTCAGAGAGGCACACAGGGtgtCCGACAGCCCTCCCACTGATGACCGACAACTTCCTCTGGAGGCCTTGGAGACACCCAGCTCCGCTTCCTTACCACGCACAGAGGAGATGTGTGCTGAGCTGACCAGGGCCATCGAGGCTGGTGACATCCAGGCGGCCTCCATCTACGCTGCCACCCTGGCTCGTCAGCAGGCAGAGCTGAAGATCCAGCCCTCTGAGAGGAGCTACGGAGACACAGATCTTAGCTTGGCTGTAGTGGTCGAAGATTCTTCGTCTTCCTGTTGTGTCACAGTGAAAGTCCCCCCCCACGCGACCATCGCAATACTCAAGCAGCAGGTATTCCTGGAGTATGGCTTCCATCCGCGGGTGCAGCGCTGGGTGATTGGCCAATGTCTGTGTGCAGACCAGCGCTCTCTCGCGTCCTACGGGGTGCGTAGGGATGGAGACACGGCCTTCCTGTACCTCCTCTCTGCCCGCCACGCCCGTCTCACACGGCAGCTGCTCCAGCAGGACCAGGAAAGAGCCCTCCTCACCCCCGCTACCCCTCCTCTTGAGACCCCAAGCAACGGCCCCACATCCCAGGACTGGAGGGGTTACAGCACCCTGCCCCCCAGACTGAGCCACAGCAGCATGGGTTCAAATGGAGCGGGGCCAAATGGAGCCGGGGCAGAGAGGCTGAAAATCAGTGAAATCAAAGACCTCATCAACCTGGAGATGCCGCAACTCACCGAAGCACTTACCCCTAAGAAATCAGGGCCACAGggttgggccTGCCCCTCTTGCACGTACATAAACAAGCCCACACGGCCTGGCTGTGAGATCTGCAGTACAGACCGTCCAGAGAGCTATACTGTTCCTGGGAGCTACAAACCAGACCCTCTGGAGCTTCACCGCATACAGCAGGAGAAAGAAGCTGTCCGACAGTACCAGCAGGCGAGGGAAGCAGAGCGGAGGGAGAACTTTGCCCGGCTGGTGATGTTGGATGGAAAGGACCTGGTGCCCAACCCAGATGCTGTGGACTGTAGGATCTGTTACCTGGACCTGCAGCCTGGGGAGGGAGTCCTGCTCAGAGAGTgtctccactgtttctgcagAGATTGCCTGCGCTCAGTAGTCCTGATGTGTGAGGACCCGGAGGTGGCCTGTCCGTACCGTGATGACACGTACGCCTGTGACTGCACCCTGCAGGGGAGAGAGATCAGAGCCTTGGTGTCGGAAGAGGAGTACGAGCGCTGGCTGCAGAGAGGCTTGTCTGTGGCAGAGTCTCGTTGTGAGGGCAGTTACCACTGTGCCAGCCCAGACTGTGCCGGGTGGTGTGTGTACGAGGACACCGTCAACGTGTTCCACTGCCCAGTCTGCAACAAGCACAACTGCCTGCTCTGCAAGgcgATTCATGAAGGGATGGACTGTAAGCAGTACCAGGATGACCTTACAACCCGTGCTGAGAACGACTCGGCAGCCCGCAGAACCAGAGATCTGCTCAAGACCCTGGTCCTCTCCGGGGAGGCCATGCACTGCCCACAGTGCGGCATCATCGTGCAGAAaaaggagggctgtgattggCTGCGTTGCACTGTCTGTCACAATGAGATCTGCTGGGTCACCAGGGGGCCTCGCTGGGGGCCTGGGGGTCCGGGAGACACCAGCGGAGGCTGCCGCTGTAACATCAACAACCAAAAATGTCACCCAAAGTGTCAGAACTGCCACTGAGAAAGACAATGAGGGATGTGTGCGTTAAGAGTAAGATAGGACAAATTAAGTGTGTGTCACTCAAAGGATTGATGATTGCACTGCACATTTAGCTATGCACGTTTTCTGTTGGTTTCTGTTCTCCCTTTAGGCTGTGTTTAGATAGTCAGTCCAATTATGATATTGTTTTCACTCATTTGTCTATTGACCAATCAGATAAGCTCTGAAAAAGACCTGATGTGATTGgccaaaataccaattagtggaaaaaataacAGAATTGGACTGCTTGTCTAAATGCAGCCCGAGTCATGCAATactgttcagggacacattaaaCTAAGTGTACTTAACTTTTTCAGCCCTCAAAGCCAAAGTCTAATGCTAATGACCGCATTCTGGGGTTGTAACAGAGAGCGTACTGTGTTCTAACTGGACATAAGAAACAGAACAAACAATCTCTGTTTCAAACTGCACTGCGTTGTGTGCCAATTAATAGCCATTTTGAAAGTACATGCGAGTTCATGTGAAATGAATACTTCTgcatgtttttctatgttttagcACCTCTGAATGAATGCCAGGCTCTGTCATGTAGATTTGTTTCCAAGACTAAGTGTTCTATTTTGCTCTATTTATTACTCACAGGCTCTGGTTACAGACAGACAAATGTATGAACGCCAAGAAAACACTTTCTATCTGCCAGTTTTCATGGAATAATCAGATTTGCTCAGTAACTGCTGTGTGCCATAGTGAGTTTTTAAAACAGTGTGTCAATAAAGCCACTCTAAACACAA

Function

NR:

description
ranBP-type and C3HC4-type zinc finger-containing protein 1-like

GO:

id name namespace
GO:0097039 protein linear polyubiquitination biological_process
GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling biological_process
GO:0071797 LUBAC complex cellular_component
GO:0008270 zinc ion binding molecular_function
GO:0043130 ubiquitin binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562478.2 False 3172 mRNA 0.53 14 16206792 16219088
XM_036943878.1 True 2663 mRNA 0.53 14 16206792 16219467

Neighbor

gene id symbol gene type direction distance location
LOC110489701 LOC106590404 coding downstream 29651 16161354 ~ 16177141 (-)
LOC110489698 LOC106590406 coding downstream 61828 16129002 ~ 16144964 (-)
LOC110489700 LOC106590414 coding downstream 78090 16125368 ~ 16128702 (-)
LOC110490931 cpa6 coding downstream 127197 16038626 ~ 16079595 (-)
LOC110490929 LOC106590401 coding downstream 171509 15938237 ~ 16035283 (-)
LOC110489704 LOC106590419 coding upstream 99432 16318899 ~ 16324594 (-)
LOC110489705 LOC106590420 coding upstream 109478 16328945 ~ 16439917 (-)
hus1 hus1 coding upstream 228978 16448445 ~ 16460069 (-)
LOC118938791 NA coding upstream 393033 16612010 ~ 16617742 (-)
LOC110489710 LOC106590425 coding upstream 448420 16667887 ~ 16680822 (-)
G1262697 NA non-coding downstream 3948 16202633 ~ 16202844 (-)
G1262694 NA non-coding downstream 6003 16200530 ~ 16200789 (-)
G1262650 NA non-coding downstream 120912 16085637 ~ 16085880 (-)
G1262624 NA non-coding downstream 163267 16043198 ~ 16043525 (-)
G1262699 NA non-coding upstream 1012 16220479 ~ 16220739 (-)
G1262708 NA non-coding upstream 10509 16229976 ~ 16230355 (-)
G1262709 NA non-coding upstream 15045 16234512 ~ 16234797 (-)
G1262728 NA non-coding upstream 28931 16248398 ~ 16248684 (-)
G1262730 NA non-coding upstream 31170 16250637 ~ 16250840 (-)
LOC110489690 LOC106590399 other downstream 361651 15821701 ~ 15845199 (-)
G1262503 NA other downstream 399175 15806250 ~ 15807617 (-)
G1261796 NA other downstream 700594 15505698 ~ 15506198 (-)
G1261602 NA other downstream 1016976 15189546 ~ 15189816 (-)
G1262745 NA other upstream 56542 16276009 ~ 16276552 (-)
G1263444 NA other upstream 426177 16645644 ~ 16646417 (-)
G1264199 LOC106590429 other upstream 1242361 17461828 ~ 17462977 (-)
G1265249 NA other upstream 1964324 18183791 ~ 18184123 (-)
G1265456 LOC106590371 other upstream 2357072 18576539 ~ 18580163 (-)

Expression


Co-expression Network