LOC110489704 (LOC106590419)


Basic Information

Item Value
gene id LOC110489704
gene name LOC106590419
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 16318899 ~ 16324594 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036943883.1
CTGGCACGCTACCCGGATGTGGACATGCGCATTTCAATTTAGCAGTCGGAAGGAGCTGTAAGATTTAGTGAAGCAATAGTTTACCGGGAAGGAGGCGTACGGATTTCCCTTCAAAATGGTACAATTTCTACCTAAAGTGCTTTTGCTGGTATTACTAGCTTTCCCGGCAATGATTATCATGAAAGGGCCATTGGTGGCAGCCCAGGATGCTACTGAGGATGAGGAGGCAGCTGATGAAGATGCTGTGGATGATGTTGATGTGAACACagaggatgaggatgatgaggCCGAAGTTGAAGATGATGAAAACACAGAATTGACGGAAgaaaaagaagaggaggaagccGTAGGAGGAGAAGTGAATGCCTCCCCCAATGCTGACACCACTATCCTCTTTGTCAAGGGAGACGGTAGGGACTTCCCAGCCAACGACATTGTGAAGTTCCTGATGGGCTTCACCAACAAGGGAAGTGACAACTTTGTGGTGGAGTCCCTGGACGCATCCTTTCGCTACCCACAGGACTTCCAGTTCTACATCCAGAACTTCACAGCCCTGCAGCTGGGCATAGTGGTGCCAGCTGGGCGCCAGGCCACCTTCGAGTACTCCTTCATCCCAGCCGAGCCCATGGGCGGGCGCCCCTTCGGCCTGGTCATCAACCTCAACTACAAAGACAGCAACggtAACACATTCCAGGATGCTGTGTTCAACCAGACAGTGACCATCACCgagagagaggatggactggATGGAGAGACGATCTTCATGTATGTGTTCCTGTCTGGTCTGGGCCTGCTAGTGGTGGTAGGCCTTCATCAGCTGCTGGAGTCCAGAAAGAGGAGGAGACCAGCTGCTAAGGTGGAGATGGGCACGTCCAGCCACAACGACGTGGACATGAGCTGGATTCCCCAGGAGACCCTTAATCAGATCATGCAGAGTCGGCGAGACAAGGCCTCCCCCAAACGGTCTCCCCGCAAGAGGACACAAAAGCGCACGGCTGGTTCGGACGAGTGACCAGGCCCCTGCCCAGTTCTGTCACTCGCGCTTGGCACCTGACACAGCCATACCTCCTCTTGCCAGCCGTGGAAAGGCAACAGTCTTCTCTCACCACGGAACCAAGTGCCGTCCTCTTCACAAGAGACCACTAAACTAGACAAAACATCACAAAAAACGGTCCCATTTGTTAATTATTCTGTCAAAAGAAGCGTTATCACAGAGGCGTTGTGATGAAGAAACATTTTATGCAGTTTGAGTGTGCTTTTGCAAAGATGCATGTCTTGAAGCATAGggaggatggggatggtggacggAAGTGGTTGGTTTTAGAGCTGGGTAAATGATAGTGGGAGATGATACAGTTCCGGGTTTTTGTTCTAGCTTTCTGTTTTGTTGCGACTGCCTTGTCATCATTTTTCACCTGTGAATATCTTTTGAGGCAGAATAGTGATGGTTAATTTTGGTGTCCTGGAAAACCATAACACACCCCTTTTTACTTGTTTTATGTTTTGCACCGTTTAAGATCTGCACATTTGGGTTTCTGTCACATTGTTGTCCTCTGCATGGTGGCACAGAGGAGGCCTGGTTTCAAGTCTTGTTATTGGTAGTGCACTGCAATGTTCAACCATCTTTGATGATTCTGTGAACATAATGAGGATATGGTGAACTGTCAAAGTTTTCCCTCAATGtgcctttattttatttttacatttgcaTTCTTCATATTCCCAAAATCGATTTACGTCAAGTACAAGTATGAATTCaggattcaatttttttttttacttttgtaAGACTGCAATCTGAATAAAGGTCCAGCACTGGTGTACAGTATCTACTGGGGAATACAGATGAGTGAACTGCAAAGATCATTTATTCCTGGCTAATGGGTTTTTATACTGCATTTCTTGACTTGTCTGGGATTACTACTTGTGCATTTTAGAGGCACAGTACatttactactgtatcatagccTGTTCATAGTAACTTATGAGAGGGACTCTGGACTAACTGTTAGGCACTGACACAGTTAGGCAATTAAATGGTCTCTGGACTGTCAAATGTATGTAAACACAACATTTTTGCAATTAAatcacacacccccccccccccccccccctctttcactGAGCTTTTTAATGACCATTTGAGAATGGGTGGATCCCAAGTAGATTTCTTTCTCTGTGATATTGTCGCAAACTTGAATGATTATTTGTTTTTTCTCTGCCGAGTATGTAAGTGAAGTGTTCATTTTGGAGACTGGTACATCTTGACGTAGAAAACAGAAAAATTAAAGTGGAGATGAGAAAA
>XM_036943884.1
CTGGCACGCTACCCGGATGTGGACATGCGCATTTCAATTTAGCAGTCGGAAGGAGCTGTAAGATTTAGTGAAGCAATAGTTTACCGGGAAGGAGGCGTACGGATTTCCCTTCAAAATGGTACAATTTCTACCTAAAGTGCTTTTGCTGGTATTACTAGCTTTCCCGGCAATGATTATCATGAAAGGGCCATTGGTGGCAGCCCAGGATGCTACTGAGGATGAGGAGGCAGCTGATGAAGATGCTGTGGATGATGTTGATGTGAACACagaggatgaggatgatgaggCCGAAGTTGAAGATGATGAAAACACAGAATTGACGGAAgaaaaagaagaggaggaagccGTAGGAGGAGAAGTGAATGCCTCCCCCAATGCTGACACCACTATCCTCTTTGTCAAGGGAGACGACTTCCCAGCCAACGACATTGTGAAGTTCCTGATGGGCTTCACCAACAAGGGAAGTGACAACTTTGTGGTGGAGTCCCTGGACGCATCCTTTCGCTACCCACAGGACTTCCAGTTCTACATCCAGAACTTCACAGCCCTGCAGCTGGGCATAGTGGTGCCAGCTGGGCGCCAGGCCACCTTCGAGTACTCCTTCATCCCAGCCGAGCCCATGGGCGGGCGCCCCTTCGGCCTGGTCATCAACCTCAACTACAAAGACAGCAACggtAACACATTCCAGGATGCTGTGTTCAACCAGACAGTGACCATCACCgagagagaggatggactggATGGAGAGACGATCTTCATGTATGTGTTCCTGTCTGGTCTGGGCCTGCTAGTGGTGGTAGGCCTTCATCAGCTGCTGGAGTCCAGAAAGAGGAGGAGACCAGCTGCTAAGGTGGAGATGGGCACGTCCAGCCACAACGACGTGGACATGAGCTGGATTCCCCAGGAGACCCTTAATCAGATCATGCAGAGTCGGCGAGACAAGGCCTCCCCCAAACGGTCTCCCCGCAAGAGGACACAAAAGCGCACGGCTGGTTCGGACGAGTGACCAGGCCCCTGCCCAGTTCTGTCACTCGCGCTTGGCACCTGACACAGCCATACCTCCTCTTGCCAGCCGTGGAAAGGCAACAGTCTTCTCTCACCACGGAACCAAGTGCCGTCCTCTTCACAAGAGACCACTAAACTAGACAAAACATCACAAAAAACGGTCCCATTTGTTAATTATTCTGTCAAAAGAAGCGTTATCACAGAGGCGTTGTGATGAAGAAACATTTTATGCAGTTTGAGTGTGCTTTTGCAAAGATGCATGTCTTGAAGCATAGggaggatggggatggtggacggAAGTGGTTGGTTTTAGAGCTGGGTAAATGATAGTGGGAGATGATACAGTTCCGGGTTTTTGTTCTAGCTTTCTGTTTTGTTGCGACTGCCTTGTCATCATTTTTCACCTGTGAATATCTTTTGAGGCAGAATAGTGATGGTTAATTTTGGTGTCCTGGAAAACCATAACACACCCCTTTTTACTTGTTTTATGTTTTGCACCGTTTAAGATCTGCACATTTGGGTTTCTGTCACATTGTTGTCCTCTGCATGGTGGCACAGAGGAGGCCTGGTTTCAAGTCTTGTTATTGGTAGTGCACTGCAATGTTCAACCATCTTTGATGATTCTGTGAACATAATGAGGATATGGTGAACTGTCAAAGTTTTCCCTCAATGtgcctttattttatttttacatttgcaTTCTTCATATTCCCAAAATCGATTTACGTCAAGTACAAGTATGAATTCaggattcaatttttttttttacttttgtaAGACTGCAATCTGAATAAAGGTCCAGCACTGGTGTACAGTATCTACTGGGGAATACAGATGAGTGAACTGCAAAGATCATTTATTCCTGGCTAATGGGTTTTTATACTGCATTTCTTGACTTGTCTGGGATTACTACTTGTGCATTTTAGAGGCACAGTACatttactactgtatcatagccTGTTCATAGTAACTTATGAGAGGGACTCTGGACTAACTGTTAGGCACTGACACAGTTAGGCAATTAAATGGTCTCTGGACTGTCAAATGTATGTAAACACAACATTTTTGCAATTAAatcacacacccccccccccccccccccctctttcactGAGCTTTTTAATGACCATTTGAGAATGGGTGGATCCCAAGTAGATTTCTTTCTCTGTGATATTGTCGCAAACTTGAATGATTATTTGTTTTTTCTCTGCCGAGTATGTAAGTGAAGTGTTCATTTTGGAGACTGGTACATCTTGACGTAGAAAACAGAAAAATTAAAGTGGAGATGAGAAAA
>XM_036943885.1
CTGGCACGCTACCCGGATGTGGACATGCGCATTTCAATTTAGCAGTCGGAAGGAGCTGTAAGATTTAGTGAAGCAATAGTTTACCGGGAAGGAGGCGTACGGATTTCCCTTCAAAATGGTACAATTTCTACCTAAAGTGCTTTTGCTGGTATTACTAGCTTTCCCGGCAATGATTATCATGAAAGGGCCATTGGTGGCAGCCCAGGATGCTACTGAGGATGAGGAGGCAGCTGATGAAGATGCTGTGGATGATGTTGATGTGAACACagaggatgaggatgatgaggCCGAAGTTGAAGATGATGAAAACACAGAATTGACGGAAgaaaaagaagaggaggaagccGTAGGAGGAGAAGTGAATGCCTCCCCCAATGCTGACACCACTATCCTCTTTGTCAAGGGAGACGGTAGGGACTTCCCAGCCAACGACATTGTGAAGTTCCTGATGGGCTTCACCAACAAGGGAAGTGACAACTTTGTGGTGGAGTCCCTGGACGCATCCTTTCGCTACCCACAGGACTTCCAGTTCTACATCCAGAACTTCACAGCCCTGCAGCTGGGCATAGTGGTGCCAGCTGGGCGCCAGGCCACCTTCGAGTACTCCTTCATCCCAGCCGAGCCCATGGGCGGGCGCCCCTTCGGCCTGGTCATCAACCTCAACTACAAAGACAGCAACggtAACACATTCCAGGATGCTGTGTTCAACCAGACAGTGACCATCACCgagagagaggatggactggATGGAGAGACGATCTTCATGTATGTGTTCCTGTCTGGTCTGGGCCTGCTAGTGGTGGTAGGCCTTCATCAGCTGCTGGAGTCCAGAAAGAGGAGGAGACCAGCTGCTAAGGTGGAGATGGGCACGTCCAGCCACAACGACGTGGACATGAGCTGGATTCCCCAGGAGACCCTTAATCAGATCAACAAGGCCTCCCCCAAACGGTCTCCCCGCAAGAGGACACAAAAGCGCACGGCTGGTTCGGACGAGTGACCAGGCCCCTGCCCAGTTCTGTCACTCGCGCTTGGCACCTGACACAGCCATACCTCCTCTTGCCAGCCGTGGAAAGGCAACAGTCTTCTCTCACCACGGAACCAAGTGCCGTCCTCTTCACAAGAGACCACTAAACTAGACAAAACATCACAAAAAACGGTCCCATTTGTTAATTATTCTGTCAAAAGAAGCGTTATCACAGAGGCGTTGTGATGAAGAAACATTTTATGCAGTTTGAGTGTGCTTTTGCAAAGATGCATGTCTTGAAGCATAGggaggatggggatggtggacggAAGTGGTTGGTTTTAGAGCTGGGTAAATGATAGTGGGAGATGATACAGTTCCGGGTTTTTGTTCTAGCTTTCTGTTTTGTTGCGACTGCCTTGTCATCATTTTTCACCTGTGAATATCTTTTGAGGCAGAATAGTGATGGTTAATTTTGGTGTCCTGGAAAACCATAACACACCCCTTTTTACTTGTTTTATGTTTTGCACCGTTTAAGATCTGCACATTTGGGTTTCTGTCACATTGTTGTCCTCTGCATGGTGGCACAGAGGAGGCCTGGTTTCAAGTCTTGTTATTGGTAGTGCACTGCAATGTTCAACCATCTTTGATGATTCTGTGAACATAATGAGGATATGGTGAACTGTCAAAGTTTTCCCTCAATGtgcctttattttatttttacatttgcaTTCTTCATATTCCCAAAATCGATTTACGTCAAGTACAAGTATGAATTCaggattcaatttttttttttacttttgtaAGACTGCAATCTGAATAAAGGTCCAGCACTGGTGTACAGTATCTACTGGGGAATACAGATGAGTGAACTGCAAAGATCATTTATTCCTGGCTAATGGGTTTTTATACTGCATTTCTTGACTTGTCTGGGATTACTACTTGTGCATTTTAGAGGCACAGTACatttactactgtatcatagccTGTTCATAGTAACTTATGAGAGGGACTCTGGACTAACTGTTAGGCACTGACACAGTTAGGCAATTAAATGGTCTCTGGACTGTCAAATGTATGTAAACACAACATTTTTGCAATTAAatcacacacccccccccccccccccccctctttcactGAGCTTTTTAATGACCATTTGAGAATGGGTGGATCCCAAGTAGATTTCTTTCTCTGTGATATTGTCGCAAACTTGAATGATTATTTGTTTTTTCTCTGCCGAGTATGTAAGTGAAGTGTTCATTTTGGAGACTGGTACATCTTGACGTAGAAAACAGAAAAATTAAAGTGGAGATGAGAAAA
>XM_036943886.1
CTGGCACGCTACCCGGATGTGGACATGCGCATTTCAATTTAGCAGTCGGAAGGAGCTGTAAGATTTAGTGAAGCAATAGTTTACCGGGAAGGAGGCGTACGGATTTCCCTTCAAAATGGTACAATTTCTACCTAAAGTGCTTTTGCTGGTATTACTAGCTTTCCCGGCAATGATTATCATGAAAGGGCCATTGGTGGCAGCCCAGGATGCTACTGAGGATGAGGAGGCAGCTGATGAAGATGCTGTGGATGATGTTGATGTGAACACagaggatgaggatgatgaggCCGAAGTTGAAGATGATGAAAACACAGAATTGACGGAAgaaaaagaagaggaggaagccGTAGGAGGAGAAGTGAATGCCTCCCCCAATGCTGACACCACTATCCTCTTTGTCAAGGGAGACGACTTCCCAGCCAACGACATTGTGAAGTTCCTGATGGGCTTCACCAACAAGGGAAGTGACAACTTTGTGGTGGAGTCCCTGGACGCATCCTTTCGCTACCCACAGGACTTCCAGTTCTACATCCAGAACTTCACAGCCCTGCAGCTGGGCATAGTGGTGCCAGCTGGGCGCCAGGCCACCTTCGAGTACTCCTTCATCCCAGCCGAGCCCATGGGCGGGCGCCCCTTCGGCCTGGTCATCAACCTCAACTACAAAGACAGCAACggtAACACATTCCAGGATGCTGTGTTCAACCAGACAGTGACCATCACCgagagagaggatggactggATGGAGAGACGATCTTCATGTATGTGTTCCTGTCTGGTCTGGGCCTGCTAGTGGTGGTAGGCCTTCATCAGCTGCTGGAGTCCAGAAAGAGGAGGAGACCAGCTGCTAAGGTGGAGATGGGCACGTCCAGCCACAACGACGTGGACATGAGCTGGATTCCCCAGGAGACCCTTAATCAGATCAACAAGGCCTCCCCCAAACGGTCTCCCCGCAAGAGGACACAAAAGCGCACGGCTGGTTCGGACGAGTGACCAGGCCCCTGCCCAGTTCTGTCACTCGCGCTTGGCACCTGACACAGCCATACCTCCTCTTGCCAGCCGTGGAAAGGCAACAGTCTTCTCTCACCACGGAACCAAGTGCCGTCCTCTTCACAAGAGACCACTAAACTAGACAAAACATCACAAAAAACGGTCCCATTTGTTAATTATTCTGTCAAAAGAAGCGTTATCACAGAGGCGTTGTGATGAAGAAACATTTTATGCAGTTTGAGTGTGCTTTTGCAAAGATGCATGTCTTGAAGCATAGggaggatggggatggtggacggAAGTGGTTGGTTTTAGAGCTGGGTAAATGATAGTGGGAGATGATACAGTTCCGGGTTTTTGTTCTAGCTTTCTGTTTTGTTGCGACTGCCTTGTCATCATTTTTCACCTGTGAATATCTTTTGAGGCAGAATAGTGATGGTTAATTTTGGTGTCCTGGAAAACCATAACACACCCCTTTTTACTTGTTTTATGTTTTGCACCGTTTAAGATCTGCACATTTGGGTTTCTGTCACATTGTTGTCCTCTGCATGGTGGCACAGAGGAGGCCTGGTTTCAAGTCTTGTTATTGGTAGTGCACTGCAATGTTCAACCATCTTTGATGATTCTGTGAACATAATGAGGATATGGTGAACTGTCAAAGTTTTCCCTCAATGtgcctttattttatttttacatttgcaTTCTTCATATTCCCAAAATCGATTTACGTCAAGTACAAGTATGAATTCaggattcaatttttttttttacttttgtaAGACTGCAATCTGAATAAAGGTCCAGCACTGGTGTACAGTATCTACTGGGGAATACAGATGAGTGAACTGCAAAGATCATTTATTCCTGGCTAATGGGTTTTTATACTGCATTTCTTGACTTGTCTGGGATTACTACTTGTGCATTTTAGAGGCACAGTACatttactactgtatcatagccTGTTCATAGTAACTTATGAGAGGGACTCTGGACTAACTGTTAGGCACTGACACAGTTAGGCAATTAAATGGTCTCTGGACTGTCAAATGTATGTAAACACAACATTTTTGCAATTAAatcacacacccccccccccccccccccctctttcactGAGCTTTTTAATGACCATTTGAGAATGGGTGGATCCCAAGTAGATTTCTTTCTCTGTGATATTGTCGCAAACTTGAATGATTATTTGTTTTTTCTCTGCCGAGTATGTAAGTGAAGTGTTCATTTTGGAGACTGGTACATCTTGACGTAGAAAACAGAAAAATTAAAGTGGAGATGAGAAAA

Function

NR:

description
translocon-associated protein subunit alpha-like

GO: NA

KEGG:

id description
K13249 SSR1; translocon-associated protein subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036943883.1 False 2305 mRNA 0.46 9 16318899 16324594
XM_036943884.1 False 2299 mRNA 0.46 9 16318899 16324594
XM_036943885.1 False 2290 mRNA 0.46 8 16318899 16324594
XM_036943886.1 True 2284 mRNA 0.46 8 16318899 16324594

Neighbor

gene id symbol gene type direction distance location
shrprbck1r LOC106590417 coding downstream 99432 16206792 ~ 16219467 (-)
LOC110489701 LOC106590404 coding downstream 141758 16161354 ~ 16177141 (-)
LOC110489698 LOC106590406 coding downstream 173935 16129002 ~ 16144964 (-)
LOC110489700 LOC106590414 coding downstream 190197 16125368 ~ 16128702 (-)
LOC110490931 cpa6 coding downstream 239304 16038626 ~ 16079595 (-)
LOC110489705 LOC106590420 coding upstream 4351 16328945 ~ 16439917 (-)
hus1 hus1 coding upstream 123851 16448445 ~ 16460069 (-)
LOC118938791 NA coding upstream 287906 16612010 ~ 16617742 (-)
LOC110489710 LOC106590425 coding upstream 343293 16667887 ~ 16680822 (-)
dph2 dph2 coding upstream 362047 16686641 ~ 16690526 (-)
G1262770 NA non-coding downstream 4759 16312472 ~ 16314140 (-)
G1262767 NA non-coding downstream 14596 16303975 ~ 16304303 (-)
G1262754 NA non-coding downstream 30539 16287043 ~ 16288360 (-)
G1262742 NA non-coding downstream 44476 16273830 ~ 16274423 (-)
G1262741 NA non-coding downstream 45962 16272703 ~ 16272937 (-)
G1262777 NA non-coding upstream 18399 16342993 ~ 16349087 (-)
G1262781 NA non-coding upstream 31019 16355613 ~ 16355835 (-)
G1262794 NA non-coding upstream 63859 16388453 ~ 16391029 (-)
G1262818 NA non-coding upstream 102145 16426739 ~ 16458725 (-)
G1262843 NA non-coding upstream 147556 16472150 ~ 16473529 (-)
G1262745 NA other downstream 42347 16276009 ~ 16276552 (-)
LOC110490929 LOC106590401 other downstream 283777 15938237 ~ 16035283 (-)
LOC110489690 LOC106590399 other downstream 473758 15821701 ~ 15845199 (-)
G1262503 NA other downstream 511282 15806250 ~ 15807617 (-)
G1261796 NA other downstream 812701 15505698 ~ 15506198 (-)
G1263444 NA other upstream 321050 16645644 ~ 16646417 (-)
G1264199 LOC106590429 other upstream 1137234 17461828 ~ 17462977 (-)
G1265249 NA other upstream 1859197 18183791 ~ 18184123 (-)
G1265456 LOC106590371 other upstream 2251945 18576539 ~ 18580163 (-)
G1266471 NA other upstream 2783965 19108559 ~ 19109357 (-)

Expression


Co-expression Network