hus1 (hus1)


Basic Information

Item Value
gene id hus1
gene name hus1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 16448445 ~ 16460069 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562200.2
GTTTCCCAGGGAAAGTATAACAGGGCTGTGTCAATGGCGCGCGGGCCAAATTGAACGCCACAACAACGCTTTTTGCTCTAAGCTACTCCCTAAAGAAAATATTTGATTTTTGTCAGTGAAAATAAAATTGATCATGAAGTTCCGAGCAAAAATGATTGATGTTGGTTGTCTTAACCATTTCACACGCCAACTTCTTTGATGAGTATCAGCTGGAAGGTGTGGCGCCTGACGCTAATGAGATCTGCCTAGAGGTAACCCCCGAAAACCTTTCCAGGGCTCTGAGAACCTctcagaatgccaagtgtgtgaaGATCAAACTGACCAAGAAGCACTGTCCTTGTCTCACTCTCGTTGCAGAACTGCCAACACTTTCCAGCGTCAGTCGTGTTGTCACCCATGACATCCCGGTGGACGTGATACCCAGAAGGCTTTGGCACGACTTCAAAGAGCccagaatgccagactttgacGTGAGCATATATTTGCCTCCACTGAAAACTATGAAAAATGTTGTGGATCGAATGAAGAATCTCTCTAACTTTCTGGTGATGGAGGCCAACCTGAATGGAGAGATGAACCTGAAGATTGAAACTGACCTGGTGTCTGTCACCACCCACTTCAAAGACCTGGGTAATCCTCCCTGGGGTGACGATGGTTCTCAGGGGCGCAGTCAGAGCAGGGACCCTGAGGTCATGGCCCACACCCGCGTGGACATCCGCAAGCTGCAACAGTTCCTCATGGGCCAGCAGGTCAACCCCAGCAAGGCAATGTGCAATATTGTCCACAAGAGGATCATTCATTTGATTCTGCTACATGAAGACGTGTCTCTGCAATACTTCATCCCAGCGGTGGCCTAGCAAGACAAACGTTGTCTAACACAAAAGTCAGCTGGGAAGGTTTGTTTTCTTCAGGATCAAATTGGCCATCCCTCCTACTGAAGGGCTAGTGTGTAGGTATGCTTTTGATTCAACCCAATCGTAACACACCTCGTTCAGCTAATCTAGGTGCTAATgagcagtagaatcagatgtgCTAGCTAAGGGTTGGAGAGAAAGCTTGccggagggtagctctccaggagaaGGGATGGGTGATCCTAGACTACACATTCCATTCATTTGAGAAGTTGTGGTTGATTTAAGATTACATGAAAACATGTGAAAAGCTTGTAAATCAACACTGCCGTCATGCACTTCCAAAAGTATAACTTATTCTCAGTGGAAGCTCATGAATTTCATCTTTAAAATGTAAAAGGTGTACTCTTAGACCTCGAACAAAGTTTGTATATTATAGTTTAGTATTTTATTTAATATGCTTACAAATCTCAAGACCTTAAATGTATTGTCTATGTATCTTGCTACTGTATTGCTGTACATAGTTTAATAATTCCACTCAAGATGTAGCTACACGCTCAGCCTTCATGCATTGTATGTACTgttaataaaacatgttttattttattgttagaA
>NM_001160574.1
GGGAAAGTATAACAGGGCTGTGTCAATGGCGCGCGGGCCAAATTGAACGCCACAACAACGCTTTTTGCTCTAAGCTACTCCCTAAAGAAAATATTTGATTTTTGTCAGTGAAAATAAAATTGATCATGAAGTTCCGAGCAAAAATGATTGATGTTGGTTGTCTTAACCATTTCACACGTGTGGTGAATACCATCTCTAAACTAACGAAGACATGCATCCTGCGACTTACTCCAAACAACCTATATTTTGTACTGTCTGGTAAGGTAGCCAGCGGAGGAGTCGGCATGTGGTGTGAATTATCTCAGGCCAACTTCTTTGATGAGTATCAGCTGGAAGGTGTGGCGCCTGACGCTAATGAGATCTGCCTAGAGGTAACCCCCGAAAACCTTTCCAGGGCTCTGAGAACCTctcagaatgccaagtgtgtgaaGATCAAACTGACCAAGAAGCACTGTCCTTGTCTCACTCTCGTTGCAGAACTGCCAACACTTTCCAGCGTCAGTCGTGTTGTCACCCATGACATCCCGGTGGACGTGATACCCAGAAGGCTTTGGCACGACTTCAAAGAGCccagaatgccagactttgacGTGAGCATATATTTGCCTCCACTGAAAACTATGAAAAATGTTGTGGATCGAATGAAGAATCTCTCTAACTTTCTGGTGATGGAGGCCAACCTGAATGGAGAGATGAACCTGAAGATTGAAACTGACCTGGTGTCTGTCACCACCCACTTCAAAGACCTGGGTAATCCTCCCTGGGGTGACGATGGTTCTCAGGGGCGCAGTCAGAGCAGGGACCCTGAGGTCATGGCCCACACCCGCGTGGACATCCGCAAGCTGCAACAGTTCCTCATGGGCCAGCAGGTCAACCCCAGCAAGGCAATGTGCAATATTGTCCACAAGAGGATCATTCATTTGATTCTGCTACATGAAGACGTGTCTCTGCAATACTTCATCCCAGCGGTGGCCTAGCAAGACAAACGTTGTCTAACACAAAAGTCAGCTGGGAAGGTTTGTTTTCTTCAGGATCAAATTGGCCATCCCTCCTACTGAAGGGCTAGTGTGTAGGTATGCTTTTGATTCAACCCAATCGTAACACACCTCGTTCAGCTAATCTAGGTGCTAATgagcagtagaatcagatgtgCTAGCTAAGGGTTGGAGAGAAAGCTTGccggagggtagctctccaggagaaGGGATGGGTGATCCTAGACTACACATTCCATTCATTTGAGAAGTTGTGGTTGATTTAAGATTACATGAAAACATGTGAAAAGCTTGTAAATCAACACTGCCGTCATGCACTTCCAAAAGTATAACTTATTCTCAGTGGAAGCTCATGAATTTCATCTTTAAAATGTAAAAGGTGTACTCTTAGACCTCGAACAAAGTTTGTATATTATAGTTTAGTATTTTATTTAATATGCTTACAAATCTCAAGACCTTAAATGTATTGTCTATGTATCTTGCTACTGTATTGCTGTACATAGTTTAATAATTCCACTCAAGATGTAGCTACACGCTCAGCCTTCATGCATTGTATGTACTgttaataaaacatgttttattttattgtt

Function

symbol description
hus1 Involved in DNA damage checkpoint signaling and cellular response to ionizing radiation. Located in nucleus.

NR:

description
PREDICTED: checkpoint protein HUS1 isoform X2

GO:

id name namespace
GO:0000077 DNA damage checkpoint biological_process
GO:0006281 DNA repair biological_process
GO:0030896 checkpoint clamp complex cellular_component
GO:0005730 nucleolus cellular_component

KEGG:

id description
K10903 HUS1; HUS1 checkpoint protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562200.2 False 1469 mRNA 0.44 7 16448445 16460069
NM_001160574.1 True 1585 mRNA 0.44 8 16448449 16460061

Neighbor

gene id symbol gene type direction distance location
LOC110489705 LOC106590420 coding downstream 8528 16328945 ~ 16439917 (-)
LOC110489704 LOC106590419 coding downstream 123851 16318899 ~ 16324594 (-)
shrprbck1r LOC106590417 coding downstream 228978 16206792 ~ 16219467 (-)
LOC110489701 LOC106590404 coding downstream 271304 16161354 ~ 16177141 (-)
LOC110489698 LOC106590406 coding downstream 303481 16129002 ~ 16144964 (-)
LOC118938791 NA coding upstream 152431 16612010 ~ 16617742 (-)
LOC110489710 LOC106590425 coding upstream 207818 16667887 ~ 16680822 (-)
dph2 dph2 coding upstream 226572 16686641 ~ 16690526 (-)
LOC110490827 LOC106590390 coding upstream 235479 16695548 ~ 16703091 (-)
LOC110489714 LOC106590427 coding upstream 259998 16720067 ~ 17062892 (-)
G1262794 NA non-coding downstream 57416 16388453 ~ 16391029 (-)
G1262781 NA non-coding downstream 92610 16355613 ~ 16355835 (-)
G1262777 NA non-coding downstream 99358 16342993 ~ 16349087 (-)
G1262770 NA non-coding downstream 134305 16312472 ~ 16314140 (-)
G1262767 NA non-coding downstream 144142 16303975 ~ 16304303 (-)
G1262843 NA non-coding upstream 12081 16472150 ~ 16473529 (-)
G1262846 NA non-coding upstream 15572 16475641 ~ 16477867 (-)
G1262876 NA non-coding upstream 47760 16507829 ~ 16508049 (-)
G1262877 NA non-coding upstream 48569 16508638 ~ 16509045 (-)
G1262879 NA non-coding upstream 49691 16509760 ~ 16510015 (-)
G1262745 NA other downstream 171893 16276009 ~ 16276552 (-)
LOC110490929 LOC106590401 other downstream 413323 15938237 ~ 16035283 (-)
LOC110489690 LOC106590399 other downstream 603304 15821701 ~ 15845199 (-)
G1262503 NA other downstream 640828 15806250 ~ 15807617 (-)
G1261796 NA other downstream 942247 15505698 ~ 15506198 (-)
G1263444 NA other upstream 185575 16645644 ~ 16646417 (-)
G1264199 LOC106590429 other upstream 1001759 17461828 ~ 17462977 (-)
G1265249 NA other upstream 1723722 18183791 ~ 18184123 (-)
G1265456 LOC106590371 other upstream 2116470 18576539 ~ 18580163 (-)
G1266471 NA other upstream 2648490 19108559 ~ 19109357 (-)

Expression


Co-expression Network